eryn 1.2.0__tar.gz → 1.2.2__tar.gz

{eryn-1.2.0 → eryn-1.2.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: eryn
-Version: 1.2.0
+Version: 1.2.2
 Summary: Eryn: an omni-MCMC sampling package.
 Author: Michael Katz
 Author-email: Michael Katz <mikekatz04@gmail.com>
@@ -50,7 +50,7 @@ Description-Content-Type: text/markdown
 
 Eryn is an advanced MCMC sampler. It has the capability to run with parallel tempering, multiple model types, and unknown counts within each model type using Reversible Jump MCMC techniques. Eryn is heavily based on [emcee](https://emcee.readthedocs.io/en/stable/). The `emcee` base structure with the Ensemble Sampler, State objects, proposal setup, and storage backends is carried over into Eryn with small changes to account for the increased complexity. In a simple sense, Eryn is an advanced (and slightly more complicated) version of `emcee`. 
 
-If you use Eryn in your publication, please cite the paper [arXiv:2303.02164](https://arxiv.org/abs/2303.02164), its [zenodo](https://zenodo.org/record/7705496#.ZAhzukJKjlw), and [emcee](https://emcee.readthedocs.io/en/stable/). The documentation for Eryn can be found here: [mikekatz04.github.io/Eryn](https://mikekatz04.github.io/Eryn). You will find the code on Github: [github.com/mikekatz04/Eryn](https://github.com/mikekatz04/Eryn). 
+If you use Eryn in your publication, please cite the paper [arXiv:2303.02164](https://arxiv.org/abs/2303.02164), its [zenodo](https://zenodo.org/records/17162828), and [emcee](https://emcee.readthedocs.io/en/stable/). The documentation for Eryn can be found here: [mikekatz04.github.io/Eryn](https://mikekatz04.github.io/Eryn). You will find the code on Github: [github.com/mikekatz04/Eryn](https://github.com/mikekatz04/Eryn). 
 
 ## Getting Started
 
@@ -65,7 +65,7 @@ To import eryn:
 from eryn.ensemble import EnsembleSampler
 ```
 
-See [examples notebook](https://github.com/mikekatz04/Eryn/blob/main/examples/Eryn_tutorial.ipynb) for more info. You can also navigate the [Documentation](https://mikekatz04.github.io/Eryn/html/index.html) pages.
+See [examples notebook](https://github.com/mikekatz04/Eryn/blob/main/examples/Eryn_tutorial.ipynb) for more info. You can also navigate the [Documentation](https://mikekatz04.github.io/Eryn/index.html) pages.
 
 
 ### Prerequisites

{eryn-1.2.0 → eryn-1.2.2}/README.md

@@ -2,7 +2,7 @@
 
 Eryn is an advanced MCMC sampler. It has the capability to run with parallel tempering, multiple model types, and unknown counts within each model type using Reversible Jump MCMC techniques. Eryn is heavily based on [emcee](https://emcee.readthedocs.io/en/stable/). The `emcee` base structure with the Ensemble Sampler, State objects, proposal setup, and storage backends is carried over into Eryn with small changes to account for the increased complexity. In a simple sense, Eryn is an advanced (and slightly more complicated) version of `emcee`. 
 
-If you use Eryn in your publication, please cite the paper [arXiv:2303.02164](https://arxiv.org/abs/2303.02164), its [zenodo](https://zenodo.org/record/7705496#.ZAhzukJKjlw), and [emcee](https://emcee.readthedocs.io/en/stable/). The documentation for Eryn can be found here: [mikekatz04.github.io/Eryn](https://mikekatz04.github.io/Eryn). You will find the code on Github: [github.com/mikekatz04/Eryn](https://github.com/mikekatz04/Eryn). 
+If you use Eryn in your publication, please cite the paper [arXiv:2303.02164](https://arxiv.org/abs/2303.02164), its [zenodo](https://zenodo.org/records/17162828), and [emcee](https://emcee.readthedocs.io/en/stable/). The documentation for Eryn can be found here: [mikekatz04.github.io/Eryn](https://mikekatz04.github.io/Eryn). You will find the code on Github: [github.com/mikekatz04/Eryn](https://github.com/mikekatz04/Eryn). 
 
 ## Getting Started
 
@@ -17,7 +17,7 @@ To import eryn:
 from eryn.ensemble import EnsembleSampler
 ```
 
-See [examples notebook](https://github.com/mikekatz04/Eryn/blob/main/examples/Eryn_tutorial.ipynb) for more info. You can also navigate the [Documentation](https://mikekatz04.github.io/Eryn/html/index.html) pages.
+See [examples notebook](https://github.com/mikekatz04/Eryn/blob/main/examples/Eryn_tutorial.ipynb) for more info. You can also navigate the [Documentation](https://mikekatz04.github.io/Eryn/index.html) pages.
 
 
 ### Prerequisites

{eryn-1.2.0 → eryn-1.2.2}/pyproject.toml

@@ -8,7 +8,7 @@ requires = [
 [project]
 name = "eryn" #@NAMESUFFIX@
 
-version = "1.2.0"
+version = "1.2.2"
 
 description = "Eryn: an omni-MCMC sampling package."
 

{eryn-1.2.0 → eryn-1.2.2}/src/eryn/ensemble.py

@@ -35,7 +35,7 @@ class EnsembleSampler(object):
     everything from a basic non-tempered MCMC to a parallel-tempered,
     global fit containing multiple branches (models) and a variable
     number of leaves (sources) per branch.
-    See `here <https://mikekatz04.github.io/Eryn/html/tutorial/Eryn_tutorial.html#The-Tree-Metaphor>`_
+    See `here <https://mikekatz04.github.io/Eryn/Eryn_tutorial.html#The-Tree-Metaphor>`_
     for a basic explainer.
 
     Parameters related to parallelization can be controlled via the ``pool`` argument.
@@ -75,7 +75,7 @@ class EnsembleSampler(object):
                 ``args`` and ``kwargs`` below.
 
                 Please see the
-                `tutorial <https://mikekatz04.github.io/Eryn/html/tutorial/Eryn_tutorial.html#>`_
+                `tutorial <https://mikekatz04.github.io/Eryn/Eryn_tutorial.html#>`_
                 for more information.
 
         priors (dict): The prior dictionary can take four forms.
@@ -98,7 +98,7 @@ class EnsembleSampler(object):
         provide_groups (bool, optional): If ``True``, provide groups as described in ``log_like_fn`` above.
             A group parameter is added for each branch. (default: ``False``)
         provide_supplemental (bool, optional): If ``True``, it will provide keyword arguments to
-            the Likelihood function: ``supps`` and ``branch_supps``. Please see the `Tutorial <https://mikekatz04.github.io/Eryn/html/tutorial/Eryn_tutorial.html#>`_
+            the Likelihood function: ``supps`` and ``branch_supps``. Please see the `Tutorial <https://mikekatz04.github.io/Eryn/Eryn_tutorial.html#>`_
             and :class:`eryn.state.BranchSupplemental` for more information.
         tempering_kwargs (dict, optional): Keyword arguments for initialization of the
             tempering class: :class:`eryn.moves.tempering.TemperatureControl`.  (default: ``{}``)