eqc-models 0.9.8__tar.gz

eqc_models-0.9.8/.gitlab-ci.yml

@@ -0,0 +1,63 @@
+image: python:3.10
+
+workflow:
+  rules:
+    - if: $CI_MERGE_REQUEST_IID
+
+stages:
+  - build
+  - test
+#  - deploy
+
+variables:
+  PIP_CACHE_DIR: "$CI_PROJECT_DIR/.cache/pip"
+  VENV_DIR: "$CI_PROJECT_DIR/venv"
+  GIT_TOKEN: "glpat-Cf3vWyPDyvmQyBv6BmB3"
+  GIT_USERNAME: "uchukwu"
+
+before_script:
+  - python -V
+  - pip -V
+
+cache:
+  paths:
+    - .cache/pip
+
+build:
+  stage: build
+  script:
+    - python -m venv $VENV_DIR
+    - source $VENV_DIR/bin/activate
+    - pip install --upgrade pip
+    - pip install build
+    - python -m build
+  artifacts:
+    paths:
+      - $VENV_DIR
+
+test:
+  stage: test
+  script:
+    - ls -la $VENV_DIR
+    - source $VENV_DIR/bin/activate
+    - pip install --upgrade pip
+    - git config --global url."https://${GIT_USERNAME}:${GIT_TOKEN}@git.qci-dev.com".insteadOf "https://git.qci-dev.com"
+    - pip install .[dev]
+    - pytest --cov=eqc-models --cov-report=xml
+  artifacts:
+    reports:
+      junit: junit.xml
+      coverage_report:
+        coverage_format: cobertura
+        path: coverage.xml
+    paths:
+      - coverage.xml
+    # coverage: /TOTAL.*?(\d+\%)/
+
+#deploy:
+#  stage: deploy
+#  script:
+#    - echo "Deploy stage - implement deployment steps here"
+#    # Add deployment steps here
+#  only:
+#    - main # only deploy from the main branch

eqc_models-0.9.8/LICENSE.txt

@@ -0,0 +1,202 @@
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eqc_models-0.9.8/MANIFEST.in

@@ -0,0 +1,11 @@
+recursive-include docs *.bat
+recursive-include docs *.css
+recursive-include docs *.png
+recursive-include docs *.py
+recursive-include docs *.rst
+recursive-include docs Makefile
+recursive-include eqc_models *.py
+recursive-include eqc_models *.pyx
+recursive-include scripts *.csv
+recursive-include scripts *.py
+recursive-include test *.py

eqc_models-0.9.8/PKG-INFO

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+Metadata-Version: 2.1
+Name: eqc-models
+Version: 0.9.8
+Summary: Optimization and ML modeling package targeting EQC devices
+Author: Quantum Computing Inc.
+Author-email: support@quantumcomputinginc.com
+Project-URL: Homepage, https://quantumcomputinginc.com
+Project-URL: Documentation, https://quantumcomputinginc.com/learn/support/software-packages/
+Project-URL: Issues, https://support.quantumcomputinginc.com/
+Requires-Python: <3.11,>=3.9
+Description-Content-Type: text/markdown
+License-File: LICENSE.txt
+Requires-Dist: numpy<2,>=1.22.1
+Requires-Dist: networkx<3,>=2.6.3
+Requires-Dist: pandas>=2.1.0
+Requires-Dist: qci-client<5,>=4.3.0
+Requires-Dist: emucore-direct==1.0.6
+Provides-Extra: direct
+Requires-Dist: eqc-direct<2,>=1.3.0; extra == "direct"
+Provides-Extra: dev
+Requires-Dist: pytest<8,>=7.1.0; extra == "dev"
+Requires-Dist: pytest-cov; extra == "dev"
+Requires-Dist: sphinx_rtd_theme<2,>=1.3.0; extra == "dev"
+
+# EQC Models
+
+## Quick Reference
+
+### Installation
+
+Install from the Python Package Index (PyPI) using 
+```bash
+pip install eqc-models
+```
+
+For pre-release and source versions, install `eqc-models` by extracting the source package and running
+
+```bash
+pip install -e .
+```
+
+from the folder with the `pyproject.toml` file. This will create an editable installation that is local to your user environment.
+Certain optimizations require extension modules, in particular `eqc_models.base.polyeval`. This is a C extension produced from
+a Cython module which evaluates polynomial expressions. Since there could be thousands of terms, the C extension can greatly 
+improve performance of some algorithms. Installing from source with pip will build the module.
+
+### Modeling
+
+Implement a model by selecting from the most appropriate model class from the available models
+and pass the required data. The model classes are (in depth first order by hierarchy)
+
+- `eqc_models.base.EQCModel`: a base class for all models
+- `eqc_models.ml.classifierbase.ClassifierBase`: a base model for machine learning classifier models
+- `eqc_models.ml.classifierqboost.QBoostClassifier`: a machine learning classifier model using QBoost
+- `eqc_models.ml.classifierqsvm.QSVMClassifier`: a machine learning classifier model using QSVM
+- `eqc_models.ml.communitydetection.CommunityDetectionModel`: a model for modeling community detection problems
+- `eqc_models.base.QuadraticModel`: a base class for all models with up to quadratic terms
+- `eqc_models.base.ConstrainedQuadraticModel`: a base class for all models with up to quadratic objective functions and linear equality constraints
+- `eqc_models.base.PolynomialModel`: a base class for all models that utilize a polynomial formulation (up to fifth order)
+- `eqc_models.allocation.AllocationModel`: an allocation model with equality resource constraints
+- `eqc_models.allocation.AllocationModelX`: an allocation model with equality and inequality resource constraints
+- `eqc_models.allocation.portmomentum.PortMomentum`: a portfolio allocation momentum model
+- `eqc_models.portbase.PortBase`: a portfolio allocation base model
+- `eqc_models.graph.MaxCutModel`: a maximum cut model
+- `eqc_models.assignment.qap.QAPModel`: a quadratic assignment problem model
+- `eqc_models.sequence.tsp.TSPModel`: a base class for TSP models
+- `eqc_models.sequence.tsp.MTZTSPModel`: a traveling salesman model using the MTZ formulation
+- `eqc_models.utilities.qplib.QGLModel`: a model based on `ConstrainedQuadraticModel` to solve problems
+  from qplib
+
+### Solvers
+
+The hierarchy of solvers uses `QciClient` from the `qci-client` package. Both Dirac-1 and Dirac-3 can be accessed using these solvers. Specific classes exist for the devices. 
+
+- `eqc_models.qciclientsolver.Dirac1CloudSolver`: A solver class that accesses Dirac-1 via the Qatalyst cloud service
+- `eqc_models.qciclientsolver.Dirac3ContinuousCloudSolver`: A solver class for quasi-continuous models that accesses Dirac-3 via the Qatalyst cloud service
+- `eqc_models.qciclientsolver.Dirac3IntegerCloudSolver`: A solver class for integer models that accesses Dirac-3 via the Qatalyst cloud service
+
+### Using Classifier Models
+
+Use of classification models is based on the well known pattern of fitting a model, then
+using the fitted model to predict classifications. Here is a snippet from the `qsvm_iris_dirac3.py` script:
+
+```python
+# Get QSVM model
+obj = QSVMClassifier(
+    relaxation_schedule=2,
+    num_samples=1,
+    upper_limit=1.0,
+    gamma=1.0,
+    eta=1.0,
+    zeta=1.0,
+)
+
+# Train
+obj.fit(X_train, y_train)
+
+y_train_prd = obj.predict(X_train)
+y_test_prd = obj.predict(X_test)
+```
+
+### Using Decision Optimization Models
+
+Decision optimization models can be utilized by building a model, then passing the model to a solver's `solve` method. The following snippet of code is taken from the `qplib_runner.py` script.
+
+```python
+# C, J are the linear and quadratic components of the expression
+# A and b are left hand and right hand side values for linear constraints
+# R is the summation constraint value for the Dirac-3 requirement
+model = QGLModel(C, J, A, b)
+domains = [R if types[j] == "REAL" else 1 for j in range(num_variables)]
+model.domains = np.array(domains)
+model.penalty_multiplier = alpha
+# set the machine slacks to 1 to add a dummy variable to capture slack value from the summation constraint
+model.machine_slacks = 1
+print(f"Constructed model with R={R} alpha={alpha}")
+solver = Dirac3CloudSolver()
+print(f"Running model with relaxation_schedule={schedule}")
+response = solver.solve(model, basename, sum_constraint=R, relaxation_schedule=schedule)
+print(f"Energy {response['results']['energies'][0]}")
+```
+
+## Design Overview
+
+This package is designed around two central base classes. The first, `EqcModel`, includes the most basic common elements of an 
+optimization model. The second, `ModelSolver`, includes the most basic elements of a solver class. While not all classes in this package
+inherit from one of these two classes, the core functionality exists in thie hierarchy. Additional things, such as algorithms and
+supporting methods take advantage of these classes. Another design choice in the package is to utilize multiple inheritance and class
+mixins for construction of functional classes. This design is not intended to impact the end user, who can simply instantiate a certain
+model or solver class for usage. If a new model class is desired, the mixin design may be utilized to construct this new class. 
+Additionally, a hybrid solver could be implemented using this same design. 
+
+## Troubleshooting Common Errors
+
+**No module named '_bz2'** This error occurs because NetworkX, a dependency of `eqc-models`, requires the bzip 2 library and it has not been found. On some linux environments, the OS package `libbzip2-dev` can be installed with apt or yum, then the python environment must be installed again.
+
+## Further Information
+
+Most of the classes in this package have doctests, see these docstrings for specific concrete examples. Also, the `scripts` and `test` directories have examples on modeling and solving with `eqc-models`.

eqc_models-0.9.8/README.md

@@ -0,0 +1,115 @@
+# EQC Models
+
+## Quick Reference
+
+### Installation
+
+Install from the Python Package Index (PyPI) using 
+```bash
+pip install eqc-models
+```
+
+For pre-release and source versions, install `eqc-models` by extracting the source package and running
+
+```bash
+pip install -e .
+```
+
+from the folder with the `pyproject.toml` file. This will create an editable installation that is local to your user environment.
+Certain optimizations require extension modules, in particular `eqc_models.base.polyeval`. This is a C extension produced from
+a Cython module which evaluates polynomial expressions. Since there could be thousands of terms, the C extension can greatly 
+improve performance of some algorithms. Installing from source with pip will build the module.
+
+### Modeling
+
+Implement a model by selecting from the most appropriate model class from the available models
+and pass the required data. The model classes are (in depth first order by hierarchy)
+
+- `eqc_models.base.EQCModel`: a base class for all models
+- `eqc_models.ml.classifierbase.ClassifierBase`: a base model for machine learning classifier models
+- `eqc_models.ml.classifierqboost.QBoostClassifier`: a machine learning classifier model using QBoost
+- `eqc_models.ml.classifierqsvm.QSVMClassifier`: a machine learning classifier model using QSVM
+- `eqc_models.ml.communitydetection.CommunityDetectionModel`: a model for modeling community detection problems
+- `eqc_models.base.QuadraticModel`: a base class for all models with up to quadratic terms
+- `eqc_models.base.ConstrainedQuadraticModel`: a base class for all models with up to quadratic objective functions and linear equality constraints
+- `eqc_models.base.PolynomialModel`: a base class for all models that utilize a polynomial formulation (up to fifth order)
+- `eqc_models.allocation.AllocationModel`: an allocation model with equality resource constraints
+- `eqc_models.allocation.AllocationModelX`: an allocation model with equality and inequality resource constraints
+- `eqc_models.allocation.portmomentum.PortMomentum`: a portfolio allocation momentum model
+- `eqc_models.portbase.PortBase`: a portfolio allocation base model
+- `eqc_models.graph.MaxCutModel`: a maximum cut model
+- `eqc_models.assignment.qap.QAPModel`: a quadratic assignment problem model
+- `eqc_models.sequence.tsp.TSPModel`: a base class for TSP models
+- `eqc_models.sequence.tsp.MTZTSPModel`: a traveling salesman model using the MTZ formulation
+- `eqc_models.utilities.qplib.QGLModel`: a model based on `ConstrainedQuadraticModel` to solve problems
+  from qplib
+
+### Solvers
+
+The hierarchy of solvers uses `QciClient` from the `qci-client` package. Both Dirac-1 and Dirac-3 can be accessed using these solvers. Specific classes exist for the devices. 
+
+- `eqc_models.qciclientsolver.Dirac1CloudSolver`: A solver class that accesses Dirac-1 via the Qatalyst cloud service
+- `eqc_models.qciclientsolver.Dirac3ContinuousCloudSolver`: A solver class for quasi-continuous models that accesses Dirac-3 via the Qatalyst cloud service
+- `eqc_models.qciclientsolver.Dirac3IntegerCloudSolver`: A solver class for integer models that accesses Dirac-3 via the Qatalyst cloud service
+
+### Using Classifier Models
+
+Use of classification models is based on the well known pattern of fitting a model, then
+using the fitted model to predict classifications. Here is a snippet from the `qsvm_iris_dirac3.py` script:
+
+```python
+# Get QSVM model
+obj = QSVMClassifier(
+    relaxation_schedule=2,
+    num_samples=1,
+    upper_limit=1.0,
+    gamma=1.0,
+    eta=1.0,
+    zeta=1.0,
+)
+
+# Train
+obj.fit(X_train, y_train)
+
+y_train_prd = obj.predict(X_train)
+y_test_prd = obj.predict(X_test)
+```
+
+### Using Decision Optimization Models
+
+Decision optimization models can be utilized by building a model, then passing the model to a solver's `solve` method. The following snippet of code is taken from the `qplib_runner.py` script.
+
+```python
+# C, J are the linear and quadratic components of the expression
+# A and b are left hand and right hand side values for linear constraints
+# R is the summation constraint value for the Dirac-3 requirement
+model = QGLModel(C, J, A, b)
+domains = [R if types[j] == "REAL" else 1 for j in range(num_variables)]
+model.domains = np.array(domains)
+model.penalty_multiplier = alpha
+# set the machine slacks to 1 to add a dummy variable to capture slack value from the summation constraint
+model.machine_slacks = 1
+print(f"Constructed model with R={R} alpha={alpha}")
+solver = Dirac3CloudSolver()
+print(f"Running model with relaxation_schedule={schedule}")
+response = solver.solve(model, basename, sum_constraint=R, relaxation_schedule=schedule)
+print(f"Energy {response['results']['energies'][0]}")
+```
+
+## Design Overview
+
+This package is designed around two central base classes. The first, `EqcModel`, includes the most basic common elements of an 
+optimization model. The second, `ModelSolver`, includes the most basic elements of a solver class. While not all classes in this package
+inherit from one of these two classes, the core functionality exists in thie hierarchy. Additional things, such as algorithms and
+supporting methods take advantage of these classes. Another design choice in the package is to utilize multiple inheritance and class
+mixins for construction of functional classes. This design is not intended to impact the end user, who can simply instantiate a certain
+model or solver class for usage. If a new model class is desired, the mixin design may be utilized to construct this new class. 
+Additionally, a hybrid solver could be implemented using this same design. 
+
+## Troubleshooting Common Errors
+
+**No module named '_bz2'** This error occurs because NetworkX, a dependency of `eqc-models`, requires the bzip 2 library and it has not been found. On some linux environments, the OS package `libbzip2-dev` can be installed with apt or yum, then the python environment must be installed again.
+
+## Further Information
+
+Most of the classes in this package have doctests, see these docstrings for specific concrete examples. Also, the `scripts` and `test` directories have examples on modeling and solving with `eqc-models`.

eqc_models-0.9.8/compile_extensions.py

@@ -0,0 +1,23 @@
+from setuptools import Extension
+from setuptools.command.build_py import build_py as _build_py
+import numpy
+
+# Modules to be compiled and include_dirs when necessary
+extensions = [
+    Extension(
+        "eqc_models.base.polyeval",
+        ["eqc_models/base/polyeval.pyx"], include_dirs=[numpy.get_include()],
+    ),
+]
+
+class build_py(_build_py):
+    def run(self):
+        self.run_command("build_ext")
+        return super().run()
+
+    def initialize_options(self):
+        super().initialize_options()
+        if self.distribution.ext_modules == None:
+            self.distribution.ext_modules = []
+
+        self.distribution.ext_modules.extend(extensions)

eqc_models-0.9.8/docs/Makefile

@@ -0,0 +1,20 @@
+# Minimal makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line, and also
+# from the environment for the first two.
+SPHINXOPTS    ?=
+SPHINXBUILD   ?= sphinx-build
+SOURCEDIR     = source
+BUILDDIR      = build
+
+# Put it first so that "make" without argument is like "make help".
+help:
+	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+.PHONY: help Makefile
+
+# Catch-all target: route all unknown targets to Sphinx using the new
+# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
+%: Makefile
+	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)