eodash_catalog 0.0.13__tar.gz → 0.0.15__tar.gz

{eodash_catalog-0.0.13 → eodash_catalog-0.0.15}/.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.0.13
+current_version = 0.0.15
 commit = True
 tag = True
 parse = (?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(\-(?P<release>[a-z]+)\.(?P<build>\d+))?

{eodash_catalog-0.0.13 → eodash_catalog-0.0.15}/.github/workflows/ci.yml

@@ -22,5 +22,7 @@ jobs:
         run: python -m pip install -r requirements.txt
       - name: Lint
         run: python -m ruff check --no-cache .
+      - name: Install eodash catalog itself for tests
+        run: python -m pip install .
       - name: Test
-        run: python -m pytest -p no:cacheprovider
+        run: cd tests && python -m pytest -p no:cacheprovider

{eodash_catalog-0.0.13 → eodash_catalog-0.0.15}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: eodash_catalog
-Version: 0.0.13
+Version: 0.0.15
 Summary: This package is intended to help create a compatible STAC catalog for the eodash dashboard client. It supports configuration of multiple endpoint types for information extraction.
 Project-URL: Documentation, https://github.com/eodash/eodash_catalog#readme
 Project-URL: Issues, https://github.com/eodash/eodash_catalog/issues

{eodash_catalog-0.0.13 → eodash_catalog-0.0.15}/src/eodash_catalog/__about__.py

@@ -1,4 +1,4 @@
 # SPDX-FileCopyrightText: 2024-present Daniel Santillan <daniel.santillan@eox.at>
 #
 # SPDX-License-Identifier: MIT
-__version__ = "0.0.13"
+__version__ = "0.0.15"

{eodash_catalog-0.0.13 → eodash_catalog-0.0.15}/src/eodash_catalog/endpoints.py

@@ -10,19 +10,21 @@ from operator import itemgetter
 
 import requests
 from dateutil import parser
-from pystac import Catalog, Collection, Item, Link, SpatialExtent, Summaries
+from pystac import Asset, Catalog, Collection, Item, Link, SpatialExtent, Summaries
 from pystac_client import Client
 
 from eodash_catalog.sh_endpoint import get_SH_token
 from eodash_catalog.stac_handling import (
     add_collection_information,
     add_example_info,
+    add_projection_info,
     get_collection_times_from_config,
     get_or_create_collection,
 )
 from eodash_catalog.thumbnails import generate_thumbnail
 from eodash_catalog.utils import (
     Options,
+    create_geojson_from_bbox,
     create_geojson_point,
     generate_veda_cog_link,
     retrieveExtentFromWMSWMTS,
@@ -104,29 +106,17 @@ def handle_STAC_based_endpoint(
             catalog, collection_config["Name"], collection_config, catalog_config, endpoint_config
         )
         for location in collection_config["Locations"]:
-            if "FilterDates" in location:
-                collection = process_STACAPI_Endpoint(
-                    catalog_config=catalog_config,
-                    endpoint_config=endpoint_config,
-                    collection_config=collection_config,
-                    catalog=catalog,
-                    options=options,
-                    headers=headers,
-                    bbox=",".join(map(str, location["Bbox"])),
-                    filter_dates=location["FilterDates"],
-                    root_collection=root_collection,
-                )
-            else:
-                collection = process_STACAPI_Endpoint(
-                    catalog_config=catalog_config,
-                    endpoint_config=endpoint_config,
-                    collection_config=collection_config,
-                    catalog=catalog,
-                    options=options,
-                    headers=headers,
-                    bbox=",".join(map(str, location["Bbox"])),
-                    root_collection=root_collection,
-                )
+            collection = process_STACAPI_Endpoint(
+                catalog_config=catalog_config,
+                endpoint_config=endpoint_config,
+                collection_config=collection_config,
+                catalog=catalog,
+                options=options,
+                headers=headers,
+                filter_dates=location.get("FilterDates"),
+                bbox=",".join(map(str, location["Bbox"])),
+                root_collection=root_collection,
+            )
             # Update identifier to use location as well as title
             # TODO: should we use the name as id? it provides much more
             # information in the clients
@@ -157,25 +147,18 @@ def handle_STAC_based_endpoint(
             if isinstance(c_child, Collection):
                 root_collection.extent.spatial.bboxes.append(c_child.extent.spatial.bboxes[0])
     else:
+        bbox = None
         if "Bbox" in endpoint_config:
-            root_collection = process_STACAPI_Endpoint(
-                catalog_config=catalog_config,
-                endpoint_config=endpoint_config,
-                collection_config=collection_config,
-                catalog=catalog,
-                options=options,
-                headers=headers,
-                bbox=",".join(map(str, endpoint_config["Bbox"])),
-            )
-        else:
-            root_collection = process_STACAPI_Endpoint(
-                catalog_config=catalog_config,
-                endpoint_config=endpoint_config,
-                collection_config=collection_config,
-                catalog=catalog,
-                options=options,
-                headers=headers,
-            )
+            bbox = ",".join(map(str, endpoint_config["Bbox"]))
+        root_collection = process_STACAPI_Endpoint(
+            catalog_config=catalog_config,
+            endpoint_config=endpoint_config,
+            collection_config=collection_config,
+            catalog=catalog,
+            options=options,
+            headers=headers,
+            bbox=bbox,
+        )
 
     add_example_info(root_collection, collection_config, endpoint_config, catalog_config)
     return root_collection
@@ -197,6 +180,12 @@ def process_STACAPI_Endpoint(
     collection = get_or_create_collection(
         catalog, endpoint_config["CollectionId"], collection_config, catalog_config, endpoint_config
     )
+    datetime_query = ["1900-01-01T00:00:00Z", "3000-01-01T00:00:00Z"]
+    if query := endpoint_config.get("Query"):
+        if start := query.get("Start"):
+            datetime_query[0] = start
+        if end := query.get("End"):
+            datetime_query[1] = end
 
     api = Client.open(endpoint_config["EndPoint"], headers=headers)
     if bbox is None:
@@ -204,7 +193,7 @@ def process_STACAPI_Endpoint(
     results = api.search(
         collections=[endpoint_config["CollectionId"]],
         bbox=bbox,
-        datetime=["1900-01-01T00:00:00Z", "3000-01-01T00:00:00Z"],
+        datetime=datetime_query,  # type: ignore
     )
     # We keep track of potential duplicate times in this list
     added_times = {}
@@ -263,7 +252,10 @@ def process_STACAPI_Endpoint(
         else:
             link.extra_fields["start_datetime"] = item.properties["start_datetime"]
             link.extra_fields["end_datetime"] = item.properties["end_datetime"]
-
+        add_projection_info(
+            endpoint_config,
+            item,
+        )
     collection.update_extent_from_items()
 
     # replace SH identifier with catalog identifier
@@ -346,6 +338,7 @@ def handle_SH_WMS_endpoint(
                         "https://stac-extensions.github.io/web-map-links/v1.1.0/schema.json",
                     ],
                 )
+                add_projection_info(endpoint_config, item)
                 add_visualization_info(item, collection_config, endpoint_config, time=time)
                 item_link = collection.add_item(item)
                 item_link.extra_fields["datetime"] = time
@@ -529,6 +522,7 @@ def handle_WMS_endpoint(
                     "https://stac-extensions.github.io/web-map-links/v1.1.0/schema.json",
                 ],
             )
+            add_projection_info(endpoint_config, item)
             add_visualization_info(item, collection_config, endpoint_config, time=t)
             link = collection.add_item(item)
             link.extra_fields["datetime"] = t
@@ -557,7 +551,7 @@ def generate_veda_tiles_link(endpoint_config: dict, item: str | None) -> str:
     if "NoData" in endpoint_config:
         no_data = "&no_data={}".format(endpoint_config["NoData"])
     item = f"&item={item}" if item else ""
-    target_url = f"https://staging-raster.delta-backend.com/stac/tiles/WebMercatorQuad/{{z}}/{{x}}/{{y}}?{collection}{item}{assets}{color_formula}{no_data}"
+    target_url = f"https://openveda.cloud/stac/tiles/WebMercatorQuad/{{z}}/{{x}}/{{y}}?{collection}{item}{assets}{color_formula}{no_data}"
     return target_url
 
 
@@ -644,7 +638,10 @@ def add_visualization_info(
             if "Rescale" in endpoint_config:
                 vmin = endpoint_config["Rescale"][0]
                 vmax = endpoint_config["Rescale"][1]
-            crs = endpoint_config.get("Crs", "EPSG:3857")
+            # depending on numerical input only
+            data_projection = endpoint_config.get("DataProjection", 3857)
+            epsg_prefix = "" if "EPSG:" in data_projection else "EPSG:"
+            crs = f"{epsg_prefix}{data_projection}"
             target_url = (
                 "{}/tiles/{}/{}/{{z}}/{{y}}/{{x}}" "?crs={}&time={{time}}&vmin={}&vmax={}&cbar={}"
             ).format(
@@ -764,3 +761,60 @@ def handle_custom_endpoint(
         collection_config,
     )
     return collection
+
+
+def handle_raw_source(
+    catalog_config: dict,
+    endpoint_config: dict,
+    collection_config: dict,
+    catalog: Catalog,
+) -> Collection:
+    collection = get_or_create_collection(
+        catalog, collection_config["Name"], collection_config, catalog_config, endpoint_config
+    )
+    if len(endpoint_config.get("TimeEntries", [])) > 0:
+        for time_entry in endpoint_config["TimeEntries"]:
+            assets = {}
+            media_type = "application/geo+json"
+            style_type = "text/vector-styles"
+            if endpoint_config["Name"] == "COG source":
+                style_type = "text/cog-styles"
+                media_type = "image/tiff"
+            for a in time_entry["Assets"]:
+                asset = Asset(
+                    href=a["File"], roles=["data"], media_type=media_type, extra_fields={}
+                )
+                add_projection_info(endpoint_config, asset)
+                assets[a["Identifier"]] = asset
+            bbox = endpoint_config.get("Bbox", [-180, -85, 180, 85])
+            item = Item(
+                id=time_entry["Time"],
+                bbox=bbox,
+                properties={},
+                geometry=create_geojson_from_bbox(bbox),
+                datetime=parser.isoparse(time_entry["Time"]),
+                assets=assets,
+                extra_fields={},
+            )
+            add_projection_info(
+                endpoint_config,
+                item,
+            )
+            if ep_st := endpoint_config.get("Style"):
+                style_link = Link(
+                    rel="style",
+                    target=ep_st
+                    if ep_st.startswith("http")
+                    else f"{catalog_config['assets_endpoint']}/{ep_st}",
+                    media_type=style_type,
+                    extra_fields={
+                        "asset:keys": list(assets),
+                    },
+                )
+                item.add_link(style_link)
+            link = collection.add_item(item)
+            link.extra_fields["datetime"] = time_entry["Time"]
+            link.extra_fields["assets"] = [a["File"] for a in time_entry["Assets"]]
+    add_collection_information(catalog_config, collection, collection_config)
+    collection.update_extent_from_items()
+    return collection

{eodash_catalog-0.0.13 → eodash_catalog-0.0.15}/src/eodash_catalog/generate_indicators.py

@@ -20,6 +20,7 @@ from eodash_catalog.endpoints import (
     handle_collection_only,
     handle_custom_endpoint,
     handle_GeoDB_endpoint,
+    handle_raw_source,
     handle_SH_endpoint,
     handle_SH_WMS_endpoint,
     handle_VEDA_endpoint,
@@ -30,6 +31,7 @@ from eodash_catalog.stac_handling import (
     add_base_overlay_info,
     add_collection_information,
     add_extra_fields,
+    add_projection_info,
     get_or_create_collection,
 )
 from eodash_catalog.utils import (
@@ -240,10 +242,15 @@ def process_collection_file(
                         collection_config,
                         catalog,
                     )
+                elif resource["Name"] in ["COG source", "GeoJSON source"]:
+                    collection = handle_raw_source(
+                        catalog_config, resource, collection_config, catalog
+                    )
                 else:
                     raise ValueError("Type of Resource is not supported")
                 if collection:
                     add_single_item_if_collection_empty(collection)
+                    add_projection_info(resource, collection)
                     add_to_catalog(collection, catalog, resource, collection_config)
                 else:
                     raise Exception(f"No collection was generated for resource {resource}")

{eodash_catalog-0.0.13 → eodash_catalog-0.0.15}/src/eodash_catalog/stac_handling.py

@@ -9,6 +9,7 @@ from pystac import (
     Catalog,
     Collection,
     Extent,
+    Item,
     Link,
     Provider,
     SpatialExtent,
@@ -87,36 +88,39 @@ def get_or_create_collection(
     return collection
 
 
-def create_web_map_link(layer: dict, role: str) -> Link:
+def create_web_map_link(layer_config: dict, role: str) -> Link:
     extra_fields = {
         "roles": [role],
-        "id": layer["id"],
+        "id": layer_config["id"],
     }
-    if layer.get("default"):
+    if layer_config.get("default"):
         extra_fields["roles"].append("default")
-    if layer.get("visible"):
+    if layer_config.get("visible"):
         extra_fields["roles"].append("visible")
-    if "visible" in layer and not layer["visible"]:
+    if "visible" in layer_config and not layer_config["visible"]:
         extra_fields["roles"].append("invisible")
 
-    match layer["protocol"]:
+    match layer_config["protocol"].lower():
         case "wms":
             # handle wms special config options
-            extra_fields["wms:layers"] = layer["layers"]
-            if "styles" in layer:
-                extra_fields["wms:styles"] = layer["styles"]
-            # TODO: handle wms dimensions extra_fields["wms:dimensions"]
+            extra_fields["wms:layers"] = layer_config["layers"]
+            if "styles" in layer_config:
+                extra_fields["wms:styles"] = layer_config["styles"]
+            if "dimensions" in layer_config:
+                extra_fields["wms:dimensions"] = layer_config["dimensions"]
         case "wmts":
-            extra_fields["wmts:layer"] = layer["layer"]
-            # TODO: handle wmts dimensions extra_fields["wmts:dimensions"]
+            extra_fields["wmts:layer"] = layer_config["layer"]
+            if "dimensions" in layer_config:
+                extra_fields["wmts:dimensions"] = layer_config["dimensions"]
 
     wml = Link(
-        rel=layer["protocol"],
-        target=layer["url"],
-        media_type=layer.get("media_type", "image/png"),
-        title=layer["name"],
+        rel=layer_config["protocol"],
+        target=layer_config["url"],
+        media_type=layer_config.get("media_type", "image/png"),
+        title=layer_config["name"],
         extra_fields=extra_fields,
     )
+    add_projection_info(layer_config, wml)
     return wml
 
 
@@ -321,25 +325,26 @@ def add_collection_information(
 def add_base_overlay_info(
     collection: Collection, catalog_config: dict, collection_config: dict
 ) -> None:
-    # check if default base layers defined
-    if "default_base_layers" in catalog_config:
+    # add custom baselayers specially for this indicator
+    if "BaseLayers" in collection_config:
+        for layer in collection_config["BaseLayers"]:
+            collection.add_link(create_web_map_link(layer, role="baselayer"))
+    # alternatively use default base layers defined
+    elif "default_base_layers" in catalog_config:
         with open(f'{catalog_config["default_base_layers"]}.yaml') as f:
             base_layers = yaml.load(f, Loader=SafeLoader)
             for layer in base_layers:
                 collection.add_link(create_web_map_link(layer, role="baselayer"))
+    # add custom overlays just for this indicator
+    if "OverlayLayers" in collection_config:
+        for layer in collection_config["OverlayLayers"]:
+            collection.add_link(create_web_map_link(layer, role="overlay"))
     # check if default overlay layers defined
-    if "default_overlay_layers" in catalog_config:
+    elif "default_overlay_layers" in catalog_config:
         with open("{}.yaml".format(catalog_config["default_overlay_layers"])) as f:
             overlay_layers = yaml.load(f, Loader=SafeLoader)
             for layer in overlay_layers:
                 collection.add_link(create_web_map_link(layer, role="overlay"))
-    if "BaseLayers" in collection_config:
-        for layer in collection_config["BaseLayers"]:
-            collection.add_link(create_web_map_link(layer, role="baselayer"))
-    if "OverlayLayers" in collection_config:
-        for layer in collection_config["OverlayLayers"]:
-            collection.add_link(create_web_map_link(layer, role="overlay"))
-    # TODO: possibility to overwrite default base and overlay layers
 
 
 def add_extra_fields(stac_object: Collection | Catalog | Link, collection_config: dict) -> None:
@@ -357,8 +362,6 @@ def add_extra_fields(stac_object: Collection | Catalog | Link, collection_config
         stac_object.extra_fields["sensor"] = collection_config["Sensor"]
     if "Agency" in collection_config:
         stac_object.extra_fields["agency"] = collection_config["Agency"]
-    if "yAxis" in collection_config:
-        stac_object.extra_fields["yAxis"] = collection_config["yAxis"]
     if "EodashIdentifier" in collection_config:
         stac_object.extra_fields["subcode"] = collection_config["EodashIdentifier"]
     if "DataSource" in collection_config:
@@ -375,6 +378,8 @@ def add_extra_fields(stac_object: Collection | Catalog | Link, collection_config
             stac_object.extra_fields["insituSources"] = collection_config["DataSource"]["InSitu"]
         if "Other" in collection_config["DataSource"]:
             stac_object.extra_fields["otherSources"] = collection_config["DataSource"]["Other"]
+    if "MapProjection" in collection_config:
+        stac_object.extra_fields["mapProjection"] = collection_config["MapProjection"]
 
 
 def get_collection_times_from_config(endpoint_config: dict) -> list[str]:
@@ -388,3 +393,29 @@ def get_collection_times_from_config(endpoint_config: dict) -> list[str]:
             timedelta_config = endpoint_config["DateTimeInterval"].get("Timedelta", {"days": 1})
             times = generateDateIsostringsFromInterval(start, end, timedelta_config)
     return times
+
+
+def add_projection_info(
+    endpoint_config: dict, stac_object: Item | Asset | Collection | Link
+) -> None:
+    if proj := endpoint_config.get("DataProjection"):
+        if isinstance(proj, str):
+            if proj.lower().startswith("epsg"):
+                # consider input such as "EPSG:4326"
+                proj = proj.lower().split("EPSG:")[1]
+            # consider a number only
+            proj = int(proj)
+        if isinstance(proj, int):
+            # only set if not existing on source stac_object
+            if not stac_object.extra_fields.get("proj:epsg"):
+                # handling EPSG code for "proj:epsg"
+                stac_object.extra_fields["proj:epsg"] = proj
+        elif isinstance(proj, dict):
+            # custom handling due to incompatibility of proj4js supported syntax (WKT1)
+            # and STAC supported syntax (projjson or WKT2)
+            # so we are taking over the DataProjection as is and deal with it in the eodash client
+            # in a non-standard compliant way
+            # https://github.com/proj4js/proj4js/issues/400
+            stac_object.extra_fields["proj4_def"] = proj
+        else:
+            raise Exception(f"Incorrect type of proj definition {proj}")

{eodash_catalog-0.0.13 → eodash_catalog-0.0.15}/src/eodash_catalog/utils.py

@@ -35,6 +35,21 @@ def create_geojson_point(lon: int | float, lat: int | float) -> dict[str, Any]:
     return {"type": "Feature", "geometry": point, "properties": {}}
 
 
+def create_geojson_from_bbox(bbox: list[float | int]) -> dict:
+    coordinates = [
+        [bbox[0], bbox[1]],
+        [bbox[2], bbox[1]],
+        [bbox[2], bbox[3]],
+        [bbox[0], bbox[3]],
+        [bbox[0], bbox[1]],
+    ]
+    polygon = {"type": "Polygon", "coordinates": [coordinates]}
+
+    feature = {"type": "Feature", "geometry": polygon, "properties": {}}
+    feature_collection = {"type": "FeatureCollection", "features": [feature]}
+    return feature_collection
+
+
 def retrieveExtentFromWMSWMTS(
     capabilities_url: str, layer: str, version: str = "1.1.1", wmts: bool = False
 ) -> tuple[list[float], list[str]]:
@@ -206,7 +221,7 @@ def generate_veda_cog_link(endpoint_config: dict, file_url: str | None) -> str:
 
     file_url = f"url={file_url}&" if file_url else ""
 
-    target_url = f"https://staging-raster.delta-backend.com/cog/tiles/WebMercatorQuad/{{z}}/{{x}}/{{y}}?{file_url}resampling_method=nearest{bidx}{colormap}{colormap_name}{rescale}"
+    target_url = f"https://openveda.cloud/cog/tiles/WebMercatorQuad/{{z}}/{{x}}/{{y}}?{file_url}resampling_method=nearest{bidx}{colormap}{colormap_name}{rescale}"
     return target_url
 
 

eodash_catalog-0.0.15/tests/test-data/regional_forecast.json

@@ -0,0 +1 @@
+{"type": "FeatureCollection", "name": "NUTS_AT_AGRI_3035", "crs": {"type": "name", "properties": {"name": "urn:ogc:def:crs:EPSG::3035"}}, "features": [{"type": "Feature", "properties": {"NUTS_ID": "AT111", "LEVL_CODE": 3, "CNTR_CODE": "AT", "NAME_LATN": "Mittelburgenland", "NUTS_NAME": "Mittelburgenland", "MOUNT_TYPE": 4, "URBN_TYPE": 3, "COAST_TYPE": 3, "FID": "AT111", "yield": {"Wheat": {"average": 9.19, "best": 9.15, "worst": 9.21}, "Maize": {"average": 12.6, "best": 13.64, "worst": 0.26}, "Sunflower": {"average": 4.91, "best": 5.59, "worst": 0.18}, "Soybean": {"average": 3.98, "best": 4.65, "worst": 1.9}}, "water_need": {"Wheat": {"average": 3, "best": 0, "worst": 37}, "Maize": {"average": 152, "best": 99, "worst": 345}, "Sunflower": {"average": 174, "best": 127, "worst": 367}, "Soybean": {"average": 170, "best": 126, "worst": 358}}, "links": {"Wheat": {"average": "/crop_model/regional_forecast?nuts_id=AT111&crop=WheatGDD&scenario=average", "best": "/crop_model/regional_forecast?nuts_id=AT111&crop=WheatGDD&scenario=best", "worst": "/crop_model/regional_forecast?nuts_id=AT111&crop=WheatGDD&scenario=worst"}, "Maize": {"average": "/crop_model/regional_forecast?nuts_id=AT111&crop=MaizeGDD&scenario=average", "best": "/crop_model/regional_forecast?nuts_id=AT111&crop=MaizeGDD&scenario=best", "worst": "/crop_model/regional_forecast?nuts_id=AT111&crop=MaizeGDD&scenario=worst"}, "Sunflower": {"average": "/crop_model/regional_forecast?nuts_id=AT111&crop=SunflowerGDD&scenario=average", "best": "/crop_model/regional_forecast?nuts_id=AT111&crop=SunflowerGDD&scenario=best", "worst": "/crop_model/regional_forecast?nuts_id=AT111&crop=SunflowerGDD&scenario=worst"}, "Soybean": {"average": "/crop_model/regional_forecast?nuts_id=AT111&crop=Soybean&scenario=average", "best": "/crop_model/regional_forecast?nuts_id=AT111&crop=Soybean&scenario=best", "worst": "/crop_model/regional_forecast?nuts_id=AT111&crop=Soybean&scenario=worst"}}}, "geometry": 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"water_need": "mm"}}, {"type": "Feature", "properties": {"NUTS_ID": "AT313", "LEVL_CODE": 3, "CNTR_CODE": "AT", "NAME_LATN": "M\u00fchlviertel", "NUTS_NAME": "M\u00fchlviertel", "MOUNT_TYPE": 3, "URBN_TYPE": 3, "COAST_TYPE": 3, "FID": "AT313", "yield": {"Wheat": {"average": 8.93, "best": 8.98, "worst": 8.89}, "Maize": {"average": "N/A", "best": "N/A", "worst": "N/A"}, "Sunflower": {"average": "N/A", "best": "N/A", "worst": "N/A"}, "Soybean": {"average": 3.54, "best": 4.52, "worst": 1.14}}, "water_need": {"Wheat": {"average": 30, "best": 27, "worst": 69}, "Maize": {"average": "N/A", "best": "N/A", "worst": "N/A"}, "Sunflower": {"average": "N/A", "best": "N/A", "worst": "N/A"}, "Soybean": {"average": 134, "best": 89, "worst": 296}}, "links": {"Wheat": {"average": "/crop_model/regional_forecast?nuts_id=AT313&crop=WheatGDD&scenario=average", "best": "/crop_model/regional_forecast?nuts_id=AT313&crop=WheatGDD&scenario=best", "worst": "/crop_model/regional_forecast?nuts_id=AT313&crop=WheatGDD&scenario=worst"}, "Maize": {"average": "", "best": "", "worst": ""}, "Sunflower": {"average": "", "best": "", "worst": ""}, "Soybean": {"average": "/crop_model/regional_forecast?nuts_id=AT313&crop=Soybean&scenario=average", "best": "/crop_model/regional_forecast?nuts_id=AT313&crop=Soybean&scenario=best", "worst": "/crop_model/regional_forecast?nuts_id=AT313&crop=Soybean&scenario=worst"}}}, "geometry": {"type": "MultiPolygon", "coordinates": [[[[4666960.763, 2841107.5930000003], [4680267.486500001, 2833529.7031999994], [4688301.636499999, 2819349.191400001], [4689776.2969, 2805059.8488999996], [4675427.5437, 2796440.8738], [4656732.846899999, 2801817.7792000007], [4649312.8651, 2803855.4235999994], [4651649.188100001, 2810828.7657999992], [4648489.1337, 2819704.3738], [4639241.3105, 2825433.0034999996], [4619451.7829, 2817006.0536], [4607259.8697, 2820043.5494], [4596341.521500001, 2829133.7541000005], [4601794.366800001, 2840349.2882000003], [4600312.774800001, 2851666.636], [4603174.0754, 2858273.119000001], [4624277.1894000005, 2839622.7402999997], [4641505.738500001, 2837187.209899999], [4651663.9683, 2845246.5511000007], [4666960.763, 2841107.5930000003]]]]}, "units": {"yield": "t/ha", "water_need": "mm"}}]}

eodash_catalog-0.0.15/tests/test_generate.py

@@ -0,0 +1,187 @@
+import json
+import os
+import shutil
+from datetime import datetime
+
+import pytest
+from dateutil import parser
+from eodash_catalog.generate_indicators import process_catalog_file
+from eodash_catalog.utils import (
+    Options,
+)
+
+
+@pytest.fixture
+def test_options():
+    outputpath = "build"
+    # yield instead of return to run code below yield after fixture released from all tests
+    yield Options(
+        catalogspath="testing-catalogs",
+        collectionspath="testing-collections",
+        indicatorspath="testing-indicators",
+        outputpath=outputpath,
+        vd=None,
+        ni=None,
+        tn=None,
+        collections=[],
+    )
+    # cleanup output after tests finish
+    shutil.rmtree(outputpath)
+
+
+@pytest.fixture()
+def catalog_output_folder(process_catalog_fixture, test_options):
+    # not-used fixture needs to be here to trigger catalog generation
+    return os.path.join(test_options.outputpath, "testing-catalog-id")
+
+
+@pytest.fixture
+def catalog_location(test_options):
+    file_path = os.path.join(test_options.catalogspath, "testing.yaml")
+    return file_path
+
+
+@pytest.fixture
+def process_catalog_fixture(catalog_location, test_options):
+    process_catalog_file(catalog_location, test_options)
+
+
+def test_catalog_file_exists(catalog_output_folder):
+    # test if catalog was created in target location
+    assert os.path.exists(catalog_output_folder)
+
+
+def test_collection_no_wms_has_a_single_item(catalog_output_folder):
+    # test that following collections were created as we expect it
+    collection_name = "imperviousness_density_2018"
+    start_date = "1970-01-01T00:00:00Z"
+    root_collection_path = os.path.join(catalog_output_folder, collection_name)
+    with open(os.path.join(root_collection_path, "collection.json")) as fp:
+        collection_json = json.load(fp)
+        # test that custom bbox is set
+        assert [-180, -85, 180, 85] in collection_json["extent"]["spatial"]["bbox"]
+        # test that time interval is 1970-today
+        assert collection_json["extent"]["temporal"]["interval"][0][0] == start_date
+        assert (
+            datetime.today().date()
+            == parser.parse(collection_json["extent"]["temporal"]["interval"][0][1]).date()
+        )
+    child_collection_path = os.path.join(root_collection_path, collection_name)
+    child_child_collection_path = os.path.join(child_collection_path, collection_name)
+    item_dir = os.path.join(child_child_collection_path, "1970")
+    item_paths = os.listdir(item_dir)
+    assert len(item_paths) == 1
+    with open(os.path.join(item_dir, item_paths[0])) as fp:
+        item_json = json.load(fp)
+        assert item_json["properties"]["start_datetime"] == start_date
+        assert item_json["collection"] == collection_name
+
+
+def test_indicator_groups_collections(catalog_output_folder):
+    collection_name = "test_indicator_grouping_collections"
+    root_collection_path = os.path.join(catalog_output_folder, collection_name)
+    with open(os.path.join(root_collection_path, "collection.json")) as fp:
+        indicator_json = json.load(fp)
+        # test that collection has two child links
+        child_links = [link for link in indicator_json["links"] if link["rel"] == "child"]
+        assert len(child_links) == 2
+        # test that summaries are aggregating individual properties of collections
+        assert len(indicator_json["summaries"]["themes"]) == 2
+        # test that bbox aggregating works
+        indicator_bbox = indicator_json["extent"]["spatial"]["bbox"]
+        assert len(indicator_bbox) == 3
+        assert [-45.24, 61.13, -35.15, 65.05] in indicator_bbox
+        assert [-145.24, -61.13, -135.15, -65.05] in indicator_bbox
+
+
+def test_indicator_map_projection_added(catalog_output_folder):
+    collection_name = "test_indicator_grouping_collections"
+    root_collection_path = os.path.join(catalog_output_folder, collection_name)
+    with open(os.path.join(root_collection_path, "collection.json")) as fp:
+        indicator_json = json.load(fp)
+        # test that collection has map projection defined
+        assert indicator_json["mapProjection"] == 3035
+
+
+def test_baselayers_and_overlays_added(catalog_output_folder):
+    collection_name = "imperviousness_density_2018"
+    root_collection_path = os.path.join(catalog_output_folder, collection_name)
+    with open(os.path.join(root_collection_path, "collection.json")) as fp:
+        collection_json = json.load(fp)
+        baselayer_links = [
+            link
+            for link in collection_json["links"]
+            if link.get("roles") and "baselayer" in link["roles"]
+        ]
+        overlay_links = [
+            link
+            for link in collection_json["links"]
+            if link.get("roles") and "overlay" in link["roles"]
+        ]
+        assert len(baselayer_links) == 1
+        assert len(overlay_links) == 1
+
+
+def test_geojson_dataset_handled(catalog_output_folder):
+    collection_name = "crop_forecast_at"
+    root_collection_path = os.path.join(catalog_output_folder, collection_name)
+    child_collection_path = os.path.join(root_collection_path, collection_name)
+    child_child_collection_path = os.path.join(child_collection_path, collection_name)
+    item_dir = os.path.join(child_child_collection_path, "2024")
+    item_paths = os.listdir(item_dir)
+    assert len(item_paths) == 1
+    with open(os.path.join(child_collection_path, "collection.json")) as fp:
+        collection_json = json.load(fp)
+        geojson_links = [
+            link
+            for link in collection_json["links"]
+            if (link.get("rel", "") == "item" and len(link.get("assets", [])) > 0)
+        ]
+        # geojson link with assets exists
+        assert len(geojson_links) > 0
+        # and has a correct value
+        assert (
+            geojson_links[0]["assets"][0]
+            == "https://raw.githubusercontent.com/eodash/eodash_catalog/main/tests/test-data/regional_forecast.json"
+        )
+        # epsg code saved on collection
+        assert collection_json["proj:epsg"] == 3035
+    with open(os.path.join(item_dir, item_paths[0])) as fp:
+        item_json = json.load(fp)
+        # mimetype saved correctly
+        assert item_json["assets"]["vector_data"]["type"] == "application/geo+json"
+        assert item_json["collection"] == collection_name
+        # epsg code is saved to item
+        assert item_json["proj:epsg"] == 3035
+        # epsg code is saved to assets
+        assert item_json["assets"]["vector_data"]["proj:epsg"] == 3035
+
+
+def test_cog_dataset_handled(catalog_output_folder):
+    collection_name = "solar_energy"
+    root_collection_path = os.path.join(catalog_output_folder, collection_name)
+    child_collection_path = os.path.join(root_collection_path, collection_name)
+    child_child_collection_path = os.path.join(child_collection_path, collection_name)
+    item_dir = os.path.join(child_child_collection_path, "2023")
+    item_paths = os.listdir(item_dir)
+    with open(os.path.join(item_dir, item_paths[0])) as fp:
+        item_json = json.load(fp)
+        assert item_json["assets"]["solar_power"]["type"] == "image/tiff"
+        assert item_json["collection"] == collection_name
+
+
+def test_baselayer_with_custom_projection_added(catalog_output_folder):
+    collection_name = "test_indicator_grouping_collections"
+    root_collection_path = os.path.join(catalog_output_folder, collection_name)
+    with open(os.path.join(root_collection_path, "collection.json")) as fp:
+        indicator_json = json.load(fp)
+        baselayer_links = [
+            link
+            for link in indicator_json["links"]
+            if link.get("roles") and "baselayer" in link["roles"]
+        ]
+        # test that manual BaseLayers definition
+        # overwrites default_baselayers, so there is just 1
+        assert len(baselayer_links) == 1
+        # test that custom proj4 definition is added to link
+        assert baselayer_links[0]["proj4_def"]["name"] == "ORTHO:680500"

eodash_catalog-0.0.15/tests/testing-catalogs/testing.yaml

@@ -0,0 +1,12 @@
+id: "testing-catalog-id"
+title: "testing catalog for integration tests"
+description: "testing catalog"
+endpoint: "https://gtif-cerulean.github.io/catalog/cerulean/"
+default_base_layers: "testing-layers/baselayers"
+default_overlay_layers: "testing-layers/overlays"
+assets_endpoint: "https://raw.githubusercontent.com/eurodatacube/eodash-assets/main/"
+collections:
+  - test_wms_no_time
+  - test_indicator
+  - test_CROPOMAT1
+  - test_see_solar_energy

eodash_catalog-0.0.15/tests/testing-collections/test_CROPOMAT1.yaml

@@ -0,0 +1,51 @@
+Name: crop_forecast_at
+Title: Austria yield
+EodashIdentifier: CROPOMAT1
+Subtitle: Yield forecast under "what-if" scenarios
+Description: ""
+Themes:
+  - agriculture
+  - economy
+Tags:
+  - Crop
+  - Yield
+  - Water
+  - Forecast
+DataSource:
+  Spaceborne:
+    Satellite:
+      - Sentinel-2
+      - CLMS HR-VPP Vegetation Indices
+      - CLMS HR-VPP Seasonal Trajectory 
+  InSitu:
+    - Meteorological data from local Meteorological offices (AT)
+Agency:
+  - ESA
+Provider:
+  - Name: CropOM
+    Url: https://cropom.com
+  - Name: Danube Data Cube
+    Url: https://ddc.cropom.com
+  - Name: Copernicus Land Monitoring Service
+    Url: https://land.copernicus.eu/en/dataset-catalog
+  - Name: FAO
+    Url: https://www.fao.org/home/en
+License:
+  - Name: Commercial license
+    Url: https://cropom.com/terms_and_conditions.pdf
+References:
+  - Name: Danube Data Cube documentation
+    Url: https://doc.cropom.com
+  - Name: AquaCrop
+    Url: https://www.fao.org/aquacrop/en/
+Resources:
+    - Name: GeoJSON source
+      Style: crop_forecast_CropOM/style_yield.json
+      Bbox: [9.27, 46.2, 17.3, 49.2]
+      DataProjection: 3035
+      TimeEntries:
+        - Time: "20240101"
+          Assets:
+            - Identifier: vector_data
+              File: "https://raw.githubusercontent.com/eodash/eodash_catalog/main/tests/test-data/regional_forecast.json"
+Legend: crop_forecast_CropOM/cm_legend.png

eodash_catalog-0.0.15/tests/testing-collections/test_see_solar_energy.yaml

@@ -0,0 +1,25 @@
+Name: solar_energy
+Title: Solar energy cog example
+EodashIdentifier: SEE
+Description: testing 
+Themes:
+  - placeholder
+Tags:
+  - placeholder
+DataSource:
+  Spaceborne:
+    Satellite:
+      - Sentinel-2
+Agency:
+  - ESA
+Resources:
+    - Name: COG source
+      Style: test_assets/cog_style.json
+      Bbox: [11, 46.5, 15.5, 48.9]
+      TimeEntries:
+        - Time: "2023"
+          Assets: 
+            - Identifier: solar_power
+              File: https://eox-gtif-public.s3.eu-central-1.amazonaws.com/DHI/v2/SolarPowerPotential_Annual_COG_clipped_3857_fixed.tif
+            - Identifier: wsf
+              File: https://eox-gtif-public.s3.eu-central-1.amazonaws.com/DHI/WSF_EucDist_Austria_3857_COG_fix.tif

eodash_catalog-0.0.15/tests/testing-collections/test_tif_demo_1.yaml

@@ -0,0 +1,19 @@
+Name: test_tif_demo_1
+Title: test_tif_demo_1
+EodashIdentifier: test_tif_demo_1
+Description: ''
+Themes:
+  - cryosphere
+Tags:
+  - placeholder
+Satellite:
+  - placeholder
+Sensor:
+  - placeholder
+Agency:
+  - ESA
+Image: Polartep_SeaIceDetection_tif_demo/thumbnail.png # existing file
+Resources:
+  - Name: Collection-only
+    EndPoint: Collection-only
+    OverwriteBBox: [-45.24, 61.13, -35.15, 65.05]

eodash_catalog-0.0.15/tests/testing-collections/test_tif_demo_2.yaml

@@ -0,0 +1,19 @@
+Name: test_tif_demo_2
+Title: test_tif_demo_2
+EodashIdentifier: test_tif_demo_2
+Description: ''
+Themes:
+  - agriculture
+Tags:
+  - placeholder
+Satellite:
+  - placeholder
+Sensor:
+  - placeholder
+Agency:
+  - ESA
+Image: Polartep_SeaIceDetection_tif_demo/thumbnail.png # existing file
+Resources:
+  - Name: Collection-only
+    EndPoint: Collection-only
+    OverwriteBBox: [-145.24, -61.13, -135.15, -65.05]

eodash_catalog-0.0.15/tests/testing-collections/test_wms_no_time.yaml

@@ -0,0 +1,21 @@
+Name: imperviousness_density_2018
+Title: Imperviousness Density 2018 WMS
+EodashIdentifier: IMD
+Description: CLMS Imperviousness Density 2018 10m resolution.
+Themes:
+  - example theme
+Tags:
+  - example tag
+DataSource:
+  Spaceborne:
+    Satellite:
+      - example satellite
+    Sensor:
+      - example sensorname
+Agency:
+  - EEA
+Resources:
+  - EndPoint: https://image.discomap.eea.europa.eu/arcgis/services/GioLandPublic/HRL_ImperviousnessDensity_2018/ImageServer/WMSServer
+    Name: WMS
+    LayerId: 'HRL_ImperviousnessDensity_2018:IMD_MosaicSymbology.rft'
+    Version: 1.3.0

eodash_catalog-0.0.15/tests/testing-indicators/test_indicator.yaml

@@ -0,0 +1,20 @@
+Name: test_indicator_grouping_collections
+Title: test_indicator_grouping_collections
+EodashIdentifier: test_indicator_1
+Description: 'test_indicator_1_description'
+MapProjection: 3035
+Collections:
+  - test_tif_demo_1
+  - test_tif_demo_2
+BaseLayers:
+  - id: sx-cat_ortho680500
+    name: Terrain Light Stereographic North
+    url: '//sxcat-demo.eox.at/sxcat_maps/wms'
+    layers: sx-cat_ortho680500
+    attribution: '{ Terrain light: Data &copy; <a href="http://www.openstreetmap.org/copyright" target="_blank">OpenStreetMap</a> contributors and <a href="//maps.eox.at/#data" target="_blank">others</a>, Rendering &copy; <a href="http://eox.at" target="_blank">EOX</a> }'
+    visible: false
+    protocol: wms
+    DataProjection: 
+      name: 'ORTHO:680500'
+      def: '+proj=ortho +lat_0=90 +lon_0=0 +x_0=0 +y_0=0 +ellps=WGS84 +units=m +no_defs'
+

eodash_catalog-0.0.15/tests/testing-layers/baselayers.yaml

@@ -0,0 +1,7 @@
+- id: cloudless-2022
+  name: EOxCloudless 2022
+  url: '//s2maps-tiles.eu/wmts/1.0.0/s2cloudless-2022_3857/default/g/{z}/{y}/{x}.jpeg'
+  media_type: image/jpeg
+  attribution: '{ EOxCloudless 2022: <a xmlns:dct="http://purl.org/dc/terms/" href="//s2maps.eu" target="_blank" property="dct:title">Sentinel-2 cloudless - s2maps.eu</a> by <a xmlns:cc="http://creativecommons.org/ns#" href="//eox.at" target="_blank" property="cc:attributionName" rel="cc:attributionURL">EOX IT Services GmbH</a> (Contains modified Copernicus Sentinel data 2022) }'
+  maxNativeZoom: 17
+  protocol: 'xyz'

eodash_catalog-0.0.15/tests/testing-layers/overlays.yaml

@@ -0,0 +1,7 @@
+- id: overlay_bright
+  name: 'Overlay labels'
+  url: '//s2maps-tiles.eu/wmts/1.0.0/overlay_base_bright_3857/default/g/{z}/{y}/{x}.png'
+  attribution: '{ Overlay: Data &copy; <a href="http://www.openstreetmap.org/copyright" target="_blank">OpenStreetMap</a> contributors, Made with Natural Earth, Rendering &copy; <a href="//eox.at" target="_blank">EOX</a> }'
+  visible: true
+  maxNativeZoom: 14
+  protocol: 'xyz'

eodash_catalog-0.0.13/tests/test_generate.py

@@ -1,2 +0,0 @@
-def test_create_test_run():
-    assert True