eo-tides 0.0.1__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- eo_tides-0.0.1/LICENSE +201 -0
- eo_tides-0.0.1/PKG-INFO +38 -0
- eo_tides-0.0.1/README.md +10 -0
- eo_tides-0.0.1/eo_tides.egg-info/PKG-INFO +38 -0
- eo_tides-0.0.1/eo_tides.egg-info/SOURCES.txt +10 -0
- eo_tides-0.0.1/eo_tides.egg-info/dependency_links.txt +1 -0
- eo_tides-0.0.1/eo_tides.egg-info/requires.txt +16 -0
- eo_tides-0.0.1/eo_tides.egg-info/top_level.txt +1 -0
- eo_tides-0.0.1/pyproject.toml +102 -0
- eo_tides-0.0.1/setup.cfg +4 -0
- eo_tides-0.0.1/tests/test_model.py +520 -0
- eo_tides-0.0.1/tests/test_validation.py +57 -0
eo_tides-0.0.1/LICENSE
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eo_tides-0.0.1/PKG-INFO
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Metadata-Version: 2.1
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Name: eo-tides
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Version: 0.0.1
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Summary: Placeholder
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Author-email: Robbi Bishop-Taylor <Robbi.BishopTaylor@ga.gov.au>
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Project-URL: Homepage, https://GeoscienceAustralia.github.io/eo-tides/
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Project-URL: Repository, https://github.com/GeoscienceAustralia/eo-tides
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Project-URL: Documentation, https://GeoscienceAustralia.github.io/eo-tides/
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Keywords: python
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Requires-Python: >=3.9
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Description-Content-Type: text/markdown
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License-File: LICENSE
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Requires-Dist: geopandas
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Requires-Dist: numpy
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Requires-Dist: odc-geo[xr]
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Requires-Dist: pandas
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Requires-Dist: pyproj
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Requires-Dist: pyTMD==2.1.6
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Requires-Dist: scikit-learn
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Requires-Dist: scipy
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Requires-Dist: shapely
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Requires-Dist: tqdm
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Provides-Extra: notebooks
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# eo-tides: Tide modelling tools for Earth Observation
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[](https://img.shields.io/github/v/release/GeoscienceAustralia/eo-tides)
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[](https://github.com/GeoscienceAustralia/eo-tides/actions/workflows/main.yml?query=branch%3Amain)
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[](https://codecov.io/gh/GeoscienceAustralia/eo-tides)
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[](https://img.shields.io/github/commit-activity/m/GeoscienceAustralia/eo-tides)
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[](https://img.shields.io/github/license/GeoscienceAustralia/eo-tides)
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- **Github repository**: <https://github.com/GeoscienceAustralia/eo-tides/>
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- **Documentation** <https://GeoscienceAustralia.github.io/eo-tides/>
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eo_tides-0.0.1/README.md
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# eo-tides: Tide modelling tools for Earth Observation
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[](https://img.shields.io/github/v/release/GeoscienceAustralia/eo-tides)
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[](https://github.com/GeoscienceAustralia/eo-tides/actions/workflows/main.yml?query=branch%3Amain)
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[](https://codecov.io/gh/GeoscienceAustralia/eo-tides)
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[](https://img.shields.io/github/commit-activity/m/GeoscienceAustralia/eo-tides)
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[](https://img.shields.io/github/license/GeoscienceAustralia/eo-tides)
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- **Github repository**: <https://github.com/GeoscienceAustralia/eo-tides/>
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- **Documentation** <https://GeoscienceAustralia.github.io/eo-tides/>
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Metadata-Version: 2.1
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Name: eo-tides
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Version: 0.0.1
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Summary: Placeholder
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Author-email: Robbi Bishop-Taylor <Robbi.BishopTaylor@ga.gov.au>
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Project-URL: Homepage, https://GeoscienceAustralia.github.io/eo-tides/
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Project-URL: Repository, https://github.com/GeoscienceAustralia/eo-tides
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Project-URL: Documentation, https://GeoscienceAustralia.github.io/eo-tides/
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Keywords: python
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Requires-Python: >=3.9
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Description-Content-Type: text/markdown
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License-File: LICENSE
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Requires-Dist: geopandas
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# eo-tides: Tide modelling tools for Earth Observation
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[](https://img.shields.io/github/v/release/GeoscienceAustralia/eo-tides)
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[](https://github.com/GeoscienceAustralia/eo-tides/actions/workflows/main.yml?query=branch%3Amain)
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[](https://codecov.io/gh/GeoscienceAustralia/eo-tides)
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[](https://img.shields.io/github/commit-activity/m/GeoscienceAustralia/eo-tides)
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[](https://img.shields.io/github/license/GeoscienceAustralia/eo-tides)
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- **Github repository**: <https://github.com/GeoscienceAustralia/eo-tides/>
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- **Documentation** <https://GeoscienceAustralia.github.io/eo-tides/>
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eo_tides
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[project]
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name = "eo-tides"
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version = "0.0.1"
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description = "Placeholder"
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authors = [{ name = "Robbi Bishop-Taylor", email = "Robbi.BishopTaylor@ga.gov.au" }]
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readme = "README.md"
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keywords = ['python']
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requires-python = ">=3.9"
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dependencies = [
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"geopandas",
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"numpy",
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"odc-geo[xr]",
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"pandas",
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"pyproj",
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"pyTMD==2.1.6",
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# "pyTMD@git+https://github.com/tsutterley/pyTMD",
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"scikit-learn",
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"scipy",
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"shapely",
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"tqdm",
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]
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[project.urls]
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Homepage = "https://GeoscienceAustralia.github.io/eo-tides/"
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Repository = "https://github.com/GeoscienceAustralia/eo-tides"
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Documentation = "https://GeoscienceAustralia.github.io/eo-tides/"
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[project.optional-dependencies]
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notebooks = [
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"odc-stac",
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"pystac-client",
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"matplotlib",
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]
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[tool.uv]
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dev-dependencies = [
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"pytest>=7.2.0",
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"nbval>=0.11.0",
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"pre-commit>=2.20.0",
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"tox>=3.25.1",
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"deptry>=0.20.0",
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"mypy>=0.991",
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"pytest-cov>=4.0.0",
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"ruff>=0.0.235",
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"mkdocs>=1.4.2",
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"mkdocs-material>=8.5.10",
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"mkdocs-jupyter>=0.25.0",
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"mkdocstrings[python]>=0.19.0",
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"black",
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"odc-stac",
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"pystac-client",
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]
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[build-system]
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requires = ["setuptools >= 61.0"]
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build-backend = "setuptools.build_meta"
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[tool.mypy]
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files = ["eo_tides"]
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python_version = "3.10"
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ignore_missing_imports = "True"
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allow_redefinition = "True"
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[tool.pytest.ini_options]
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testpaths = ["tests"]
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[tool.ruff]
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target-version = "py310"
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line-length = 120
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fix = true
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lint.ignore = [
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# LineTooLong
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"E501",
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# DoNotAssignLambda
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"E731",
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# Unused import
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"F401"
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]
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[tool.ruff.format]
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preview = true
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[tool.ruff.lint.per-file-ignores]
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"tests/*" = ["S101"]
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[tool.deptry.per_rule_ignores]
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DEP002 = [
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"matplotlib",
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"folium",
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"pystac-client",
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]
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[tool.coverage.report]
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skip_empty = true
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[tool.coverage.run]
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branch = true
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source = ["eo_tides"]
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[tool.setuptools]
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py-modules = ["eo_tides"]
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eo_tides-0.0.1/setup.cfg
ADDED
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import geopandas as gpd
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import numpy as np
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import odc.stac
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import pandas as pd
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import pystac_client
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import pytest
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import xarray as xr
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from eo_tides.model import model_tides, pixel_tides
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from eo_tides.validation import eval_metrics
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GAUGE_X = 122.2183
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GAUGE_Y = -18.0008
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ENSEMBLE_MODELS = ["FES2014", "HAMTIDE11"] # simplified for tests
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@pytest.fixture()
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def measured_tides_ds():
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"""
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Load measured sea level data from the Broome ABSLMP tidal station:
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http://www.bom.gov.au/oceanography/projects/abslmp/data/data.shtml
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"""
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# Metadata for Broome ABSLMP tidal station:
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# http://www.bom.gov.au/oceanography/projects/abslmp/data/data.shtml
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ahd_offset = -5.322
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# Load measured tides from ABSLMP tide gauge data
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measured_tides_df = pd.read_csv(
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"tests/data/IDO71013_2020.csv",
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index_col=0,
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parse_dates=True,
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na_values=-9999,
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)[["Sea Level"]]
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# Update index and column names
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measured_tides_df.index.name = "time"
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measured_tides_df.columns = ["tide_m"]
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# Apply station AHD offset
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measured_tides_df += ahd_offset
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# Return as xarray dataset
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return measured_tides_df.to_xarray()
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# Create test data in different CRSs and resolutions
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@pytest.fixture(
|
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params=[
|
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("EPSG:3577", 30), # Australian Albers 30 m pixels
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("EPSG:4326", 0.00025), # WGS84, 0.0025 degree pixels
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],
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ids=["satellite_ds_epsg3577", "satellite_ds_epsg4326"],
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)
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def satellite_ds(request):
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"""
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Load a sample timeseries of Landsat 8 data using odc-stac
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"""
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# Obtain CRS and resolution params
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crs, res = request.param
|
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# Connect to stac catalogue
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catalog = pystac_client.Client.open("https://explorer.dea.ga.gov.au/stac")
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# Set cloud defaults
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odc.stac.configure_rio(
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cloud_defaults=True,
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aws={"aws_unsigned": True},
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)
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# Build a query with the parameters above
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bbox = [GAUGE_X - 0.08, GAUGE_Y - 0.08, GAUGE_X + 0.08, GAUGE_Y + 0.08]
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query = catalog.search(
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bbox=bbox,
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collections=["ga_ls8c_ard_3"],
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datetime="2020-01/2020-02",
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)
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# Search the STAC catalog for all items matching the query
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ds = odc.stac.load(
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list(query.items()),
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bands=["nbart_red"],
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crs=crs,
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resolution=res,
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groupby="solar_day",
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bbox=bbox,
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fail_on_error=False,
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chunks={},
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)
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return ds
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# Run test for multiple input coordinates, CRSs and interpolation methods
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@pytest.mark.parametrize(
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"x, y, crs, method",
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[
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(GAUGE_X, GAUGE_Y, "EPSG:4326", "bilinear"), # WGS84, bilinear interp
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(GAUGE_X, GAUGE_Y, "EPSG:4326", "spline"), # WGS84, spline interp
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(
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-1034913,
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-1961916,
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"EPSG:3577",
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"bilinear",
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), # Australian Albers, bilinear interp
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],
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)
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def test_model_tides(measured_tides_ds, x, y, crs, method):
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# Run FES2014 tidal model for locations and timesteps in tide gauge data
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modelled_tides_df = model_tides(
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x=[x],
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y=[y],
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time=measured_tides_ds.time,
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crs=crs,
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method=method,
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)
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# Compare measured and modelled tides
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val_stats = eval_metrics(x=measured_tides_ds.tide_m, y=modelled_tides_df.tide_m)
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+
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# Test that modelled tides contain correct headings and have same
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# number of timesteps
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assert modelled_tides_df.index.names == ["time", "x", "y"]
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assert modelled_tides_df.columns.tolist() == ["tide_model", "tide_m"]
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assert len(modelled_tides_df.index) == len(measured_tides_ds.time)
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+
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# Test that modelled tides meet expected accuracy
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assert val_stats["Correlation"] > 0.99
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assert val_stats["RMSE"] < 0.26
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assert val_stats["R-squared"] > 0.96
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assert abs(val_stats["Bias"]) < 0.20
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+
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# Run tests for one or multiple models, and long and wide format outputs
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@pytest.mark.parametrize(
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"models, output_format",
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[
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(["FES2014"], "long"),
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(["FES2014"], "wide"),
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(["FES2014", "HAMTIDE11"], "long"),
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(["FES2014", "HAMTIDE11"], "wide"),
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],
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ids=[
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"single_model_long",
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"single_model_wide",
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"multiple_models_long",
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"multiple_models_wide",
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],
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)
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def test_model_tides_multiplemodels(measured_tides_ds, models, output_format):
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150
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# Model tides for one or multiple tide models and output formats
|
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151
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modelled_tides_df = model_tides(
|
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x=[GAUGE_X],
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y=[GAUGE_Y],
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time=measured_tides_ds.time,
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155
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model=models,
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156
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+
output_format=output_format,
|
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157
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+
)
|
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158
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+
|
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159
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if output_format == "long":
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160
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+
# Verify output has correct columns
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161
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+
assert modelled_tides_df.index.names == ["time", "x", "y"]
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162
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+
assert modelled_tides_df.columns.tolist() == ["tide_model", "tide_m"]
|
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163
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+
|
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164
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# Verify tide model column contains correct values
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165
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assert modelled_tides_df.tide_model.unique().tolist() == models
|
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166
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+
|
|
167
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+
# Verify that dataframe has length of original timesteps multipled by
|
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168
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+
# n models
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169
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+
assert len(modelled_tides_df.index) == len(measured_tides_ds.time) * len(models)
|
|
170
|
+
|
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171
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+
elif output_format == "wide":
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# Verify output has correct columns
|
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173
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assert modelled_tides_df.index.names == ["time", "x", "y"]
|
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174
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+
assert modelled_tides_df.columns.tolist() == models
|
|
175
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+
|
|
176
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# Verify output has same length as orginal timesteps
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177
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assert len(modelled_tides_df.index) == len(measured_tides_ds.time)
|
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178
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+
|
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179
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+
|
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180
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# Run tests for each unit, providing expected outputs
|
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181
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+
@pytest.mark.parametrize(
|
|
182
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+
"units, expected_range, expected_dtype",
|
|
183
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+
[("m", 10, "float32"), ("cm", 1000, "int16"), ("mm", 10000, "int16")],
|
|
184
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ids=["metres", "centimetres", "millimetres"],
|
|
185
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+
)
|
|
186
|
+
def test_model_tides_units(measured_tides_ds, units, expected_range, expected_dtype):
|
|
187
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+
# Model tides
|
|
188
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+
modelled_tides_df = model_tides(
|
|
189
|
+
x=[GAUGE_X],
|
|
190
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+
y=[GAUGE_Y],
|
|
191
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+
time=measured_tides_ds.time,
|
|
192
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+
output_units=units,
|
|
193
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+
)
|
|
194
|
+
|
|
195
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+
# Calculate tide range
|
|
196
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+
tide_range = modelled_tides_df.tide_m.max() - modelled_tides_df.tide_m.min()
|
|
197
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+
|
|
198
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+
# Verify tide range and dtypes are as expected for unit
|
|
199
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+
assert np.isclose(tide_range, expected_range, rtol=0.01)
|
|
200
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+
assert modelled_tides_df.tide_m.dtype == expected_dtype
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|
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# Run test for each combination of mode, output format, and one or
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# multiple tide models
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@pytest.mark.parametrize(
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"mode, models, output_format",
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[
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("one-to-many", ["FES2014"], "long"),
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("one-to-one", ["FES2014"], "long"),
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("one-to-many", ["FES2014"], "wide"),
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("one-to-one", ["FES2014"], "wide"),
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+
("one-to-many", ["FES2014", "HAMTIDE11"], "long"),
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("one-to-one", ["FES2014", "HAMTIDE11"], "long"),
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+
("one-to-many", ["FES2014", "HAMTIDE11"], "wide"),
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("one-to-one", ["FES2014", "HAMTIDE11"], "wide"),
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+
],
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+
)
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+
def test_model_tides_mode(mode, models, output_format):
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+
# Input params
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220
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+
x = [122.14, 122.30, 122.12]
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y = [-17.91, -17.92, -18.07]
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+
times = pd.date_range("2020", "2021", periods=3)
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+
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# Model tides
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+
modelled_tides_df = model_tides(
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+
x=x,
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y=y,
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time=times,
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+
mode=mode,
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+
output_format=output_format,
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model=models,
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)
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+
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if mode == "one-to-one":
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+
if output_format == "wide":
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# Should have the same number of rows as input x, y, times
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+
assert len(modelled_tides_df.index) == len(x)
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+
assert len(modelled_tides_df.index) == len(times)
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+
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240
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+
# Output indexes should match order of input x, y, times
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+
assert all(modelled_tides_df.index.get_level_values("time") == times)
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+
assert all(modelled_tides_df.index.get_level_values("x") == x)
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+
assert all(modelled_tides_df.index.get_level_values("y") == y)
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+
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245
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+
elif output_format == "long":
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+
# In "long" format, the number of x, y points multiplied by
|
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247
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+
# the number of tide models
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248
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+
assert len(modelled_tides_df.index) == len(x) * len(models)
|
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249
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+
|
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250
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+
# Verify index values match expected x, y, time order
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+
assert all(modelled_tides_df.index.get_level_values("time") == np.tile(times, len(models)))
|
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252
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+
assert all(modelled_tides_df.index.get_level_values("x") == np.tile(x, len(models)))
|
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253
|
+
assert all(modelled_tides_df.index.get_level_values("y") == np.tile(y, len(models)))
|
|
254
|
+
|
|
255
|
+
if mode == "one-to-many":
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256
|
+
if output_format == "wide":
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257
|
+
# In "wide" output format, the number of rows should equal
|
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258
|
+
# the number of x, y points multiplied by timesteps
|
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259
|
+
assert len(modelled_tides_df.index) == len(x) * len(times)
|
|
260
|
+
|
|
261
|
+
# TODO: Work out what order rows should be returned in in
|
|
262
|
+
# "one-to-many" and "wide" mode
|
|
263
|
+
|
|
264
|
+
elif output_format == "long":
|
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265
|
+
# In "long" output format, the number of rows should equal
|
|
266
|
+
# the number of x, y points multiplied by timesteps and
|
|
267
|
+
# the number of tide models
|
|
268
|
+
assert len(modelled_tides_df.index) == len(x) * len(times) * len(models)
|
|
269
|
+
|
|
270
|
+
# Verify index values match expected x, y, time order
|
|
271
|
+
assert all(modelled_tides_df.index.get_level_values("time") == np.tile(times, len(x) * len(models)))
|
|
272
|
+
assert all(modelled_tides_df.index.get_level_values("x") == np.tile(np.repeat(x, len(times)), len(models)))
|
|
273
|
+
assert all(modelled_tides_df.index.get_level_values("y") == np.tile(np.repeat(y, len(times)), len(models)))
|
|
274
|
+
|
|
275
|
+
|
|
276
|
+
# Test ensemble modelling functionality
|
|
277
|
+
def test_model_tides_ensemble():
|
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278
|
+
# Input params
|
|
279
|
+
x = [122.14, 144.910368]
|
|
280
|
+
y = [-17.91, -37.919491]
|
|
281
|
+
times = pd.date_range("2020", "2021", periods=2)
|
|
282
|
+
|
|
283
|
+
# Default, only ensemble requested
|
|
284
|
+
modelled_tides_df = model_tides(
|
|
285
|
+
x=x,
|
|
286
|
+
y=y,
|
|
287
|
+
time=times,
|
|
288
|
+
model="ensemble",
|
|
289
|
+
ensemble_models=ENSEMBLE_MODELS,
|
|
290
|
+
)
|
|
291
|
+
|
|
292
|
+
assert modelled_tides_df.index.names == ["time", "x", "y"]
|
|
293
|
+
assert modelled_tides_df.columns.tolist() == ["tide_model", "tide_m"]
|
|
294
|
+
assert all(modelled_tides_df.tide_model == "ensemble")
|
|
295
|
+
|
|
296
|
+
# Default, ensemble + other models requested
|
|
297
|
+
models = ["FES2014", "HAMTIDE11", "ensemble"]
|
|
298
|
+
modelled_tides_df = model_tides(
|
|
299
|
+
x=x,
|
|
300
|
+
y=y,
|
|
301
|
+
time=times,
|
|
302
|
+
model=models,
|
|
303
|
+
ensemble_models=ENSEMBLE_MODELS,
|
|
304
|
+
)
|
|
305
|
+
|
|
306
|
+
assert modelled_tides_df.index.names == ["time", "x", "y"]
|
|
307
|
+
assert modelled_tides_df.columns.tolist() == ["tide_model", "tide_m"]
|
|
308
|
+
assert set(modelled_tides_df.tide_model) == set(models)
|
|
309
|
+
assert np.allclose(
|
|
310
|
+
modelled_tides_df.tide_m,
|
|
311
|
+
[
|
|
312
|
+
-2.831,
|
|
313
|
+
-1.897,
|
|
314
|
+
-0.207,
|
|
315
|
+
0.035,
|
|
316
|
+
-2.655,
|
|
317
|
+
-1.772,
|
|
318
|
+
0.073,
|
|
319
|
+
-0.071,
|
|
320
|
+
-2.743,
|
|
321
|
+
-1.835,
|
|
322
|
+
-0.067,
|
|
323
|
+
-0.018,
|
|
324
|
+
],
|
|
325
|
+
atol=0.02,
|
|
326
|
+
)
|
|
327
|
+
|
|
328
|
+
# One-to-one mode
|
|
329
|
+
modelled_tides_df = model_tides(
|
|
330
|
+
x=x,
|
|
331
|
+
y=y,
|
|
332
|
+
time=times,
|
|
333
|
+
model=models,
|
|
334
|
+
mode="one-to-one",
|
|
335
|
+
ensemble_models=ENSEMBLE_MODELS,
|
|
336
|
+
)
|
|
337
|
+
|
|
338
|
+
assert modelled_tides_df.index.names == ["time", "x", "y"]
|
|
339
|
+
assert modelled_tides_df.columns.tolist() == ["tide_model", "tide_m"]
|
|
340
|
+
assert set(modelled_tides_df.tide_model) == set(models)
|
|
341
|
+
|
|
342
|
+
# Wide mode, default
|
|
343
|
+
modelled_tides_df = model_tides(
|
|
344
|
+
x=x,
|
|
345
|
+
y=y,
|
|
346
|
+
time=times,
|
|
347
|
+
model=models,
|
|
348
|
+
output_format="wide",
|
|
349
|
+
ensemble_models=ENSEMBLE_MODELS,
|
|
350
|
+
)
|
|
351
|
+
|
|
352
|
+
# Check that expected models exist, and that ensemble is approx average
|
|
353
|
+
# of other two models
|
|
354
|
+
assert set(modelled_tides_df.columns) == set(models)
|
|
355
|
+
assert np.allclose(
|
|
356
|
+
0.5 * (modelled_tides_df.FES2014 + modelled_tides_df.HAMTIDE11),
|
|
357
|
+
modelled_tides_df.ensemble,
|
|
358
|
+
)
|
|
359
|
+
|
|
360
|
+
# Wide mode, top n == 1
|
|
361
|
+
modelled_tides_df = model_tides(
|
|
362
|
+
x=x,
|
|
363
|
+
y=y,
|
|
364
|
+
time=times,
|
|
365
|
+
model=models,
|
|
366
|
+
output_format="wide",
|
|
367
|
+
ensemble_top_n=1,
|
|
368
|
+
ensemble_models=ENSEMBLE_MODELS,
|
|
369
|
+
)
|
|
370
|
+
|
|
371
|
+
# Check that expected models exist, and that ensemble is equal to at
|
|
372
|
+
# least one of the other models
|
|
373
|
+
assert set(modelled_tides_df.columns) == set(models)
|
|
374
|
+
assert all(
|
|
375
|
+
(modelled_tides_df.FES2014 == modelled_tides_df.ensemble)
|
|
376
|
+
| (modelled_tides_df.HAMTIDE11 == modelled_tides_df.ensemble)
|
|
377
|
+
)
|
|
378
|
+
|
|
379
|
+
# Check that correct model is the closest at each row
|
|
380
|
+
closer_model = modelled_tides_df.apply(
|
|
381
|
+
lambda row: (
|
|
382
|
+
"FES2014"
|
|
383
|
+
if abs(row["ensemble"] - row["FES2014"]) < abs(row["ensemble"] - row["HAMTIDE11"])
|
|
384
|
+
else "HAMTIDE11"
|
|
385
|
+
),
|
|
386
|
+
axis=1,
|
|
387
|
+
).tolist()
|
|
388
|
+
assert closer_model == ["FES2014", "HAMTIDE11", "FES2014", "HAMTIDE11"]
|
|
389
|
+
|
|
390
|
+
# Check values are expected
|
|
391
|
+
assert np.allclose(modelled_tides_df.ensemble, [-2.830, 0.073, -1.900, -0.072], atol=0.02)
|
|
392
|
+
|
|
393
|
+
# Wide mode, custom functions
|
|
394
|
+
ensemble_funcs = {
|
|
395
|
+
"ensemble-best": lambda x: x["rank"] == 1,
|
|
396
|
+
"ensemble-worst": lambda x: x["rank"] == 2,
|
|
397
|
+
"ensemble-mean-top2": lambda x: x["rank"].isin([1, 2]),
|
|
398
|
+
"ensemble-mean-weighted": lambda x: 3 - x["rank"],
|
|
399
|
+
"ensemble-mean": lambda x: x["rank"] <= 2,
|
|
400
|
+
}
|
|
401
|
+
modelled_tides_df = model_tides(
|
|
402
|
+
x=x,
|
|
403
|
+
y=y,
|
|
404
|
+
time=times,
|
|
405
|
+
model=models,
|
|
406
|
+
output_format="wide",
|
|
407
|
+
ensemble_func=ensemble_funcs,
|
|
408
|
+
ensemble_models=ENSEMBLE_MODELS,
|
|
409
|
+
)
|
|
410
|
+
|
|
411
|
+
# Check that expected models exist, and that valid data is produced
|
|
412
|
+
assert set(modelled_tides_df.columns) == set([
|
|
413
|
+
"FES2014",
|
|
414
|
+
"HAMTIDE11",
|
|
415
|
+
"ensemble-best",
|
|
416
|
+
"ensemble-worst",
|
|
417
|
+
"ensemble-mean-top2",
|
|
418
|
+
"ensemble-mean-weighted",
|
|
419
|
+
"ensemble-mean",
|
|
420
|
+
])
|
|
421
|
+
assert all(modelled_tides_df.notnull())
|
|
422
|
+
|
|
423
|
+
# Long mode, custom functions
|
|
424
|
+
modelled_tides_df = model_tides(
|
|
425
|
+
x=x,
|
|
426
|
+
y=y,
|
|
427
|
+
time=times,
|
|
428
|
+
model=models,
|
|
429
|
+
output_format="long",
|
|
430
|
+
ensemble_func=ensemble_funcs,
|
|
431
|
+
ensemble_models=ENSEMBLE_MODELS,
|
|
432
|
+
)
|
|
433
|
+
|
|
434
|
+
# Check that expected models exist in "tide_model" column
|
|
435
|
+
assert set(modelled_tides_df.tide_model) == set([
|
|
436
|
+
"FES2014",
|
|
437
|
+
"HAMTIDE11",
|
|
438
|
+
"ensemble-best",
|
|
439
|
+
"ensemble-worst",
|
|
440
|
+
"ensemble-mean-top2",
|
|
441
|
+
"ensemble-mean-weighted",
|
|
442
|
+
"ensemble-mean",
|
|
443
|
+
])
|
|
444
|
+
|
|
445
|
+
|
|
446
|
+
# Run tests for default and custom resolutions
|
|
447
|
+
@pytest.mark.parametrize("resolution", [None, "custom"])
|
|
448
|
+
def test_pixel_tides(satellite_ds, measured_tides_ds, resolution):
|
|
449
|
+
# Use different custom resolution depending on CRS
|
|
450
|
+
if resolution == "custom":
|
|
451
|
+
resolution = 0.1 if satellite_ds.odc.geobox.crs.geographic else 10000
|
|
452
|
+
|
|
453
|
+
# Model tides using `pixel_tides`
|
|
454
|
+
modelled_tides_ds, modelled_tides_lowres = pixel_tides(satellite_ds, resolution=resolution)
|
|
455
|
+
|
|
456
|
+
# Interpolate measured tide data to same timesteps
|
|
457
|
+
measured_tides_ds = measured_tides_ds.interp(time=satellite_ds.time, method="linear")
|
|
458
|
+
|
|
459
|
+
# Assert that modelled tides have the same shape and dims as
|
|
460
|
+
# arrays in `satellite_ds`
|
|
461
|
+
assert modelled_tides_ds.shape == satellite_ds.nbart_red.shape
|
|
462
|
+
assert modelled_tides_ds.dims == satellite_ds.nbart_red.dims
|
|
463
|
+
|
|
464
|
+
# Assert that high res and low res data have the same dims
|
|
465
|
+
assert modelled_tides_ds.dims == modelled_tides_lowres.dims
|
|
466
|
+
|
|
467
|
+
# Test through time at tide gauge
|
|
468
|
+
|
|
469
|
+
# Create tide gauge point, and reproject to dataset CRS
|
|
470
|
+
tide_gauge_point = gpd.points_from_xy(
|
|
471
|
+
x=[GAUGE_X],
|
|
472
|
+
y=[GAUGE_Y],
|
|
473
|
+
crs="EPSG:4326",
|
|
474
|
+
).to_crs(satellite_ds.odc.geobox.crs)
|
|
475
|
+
|
|
476
|
+
try:
|
|
477
|
+
modelled_tides_gauge = modelled_tides_ds.sel(
|
|
478
|
+
y=tide_gauge_point[0].y,
|
|
479
|
+
x=tide_gauge_point[0].x,
|
|
480
|
+
method="nearest",
|
|
481
|
+
)
|
|
482
|
+
except KeyError:
|
|
483
|
+
modelled_tides_gauge = modelled_tides_ds.sel(
|
|
484
|
+
latitude=tide_gauge_point[0].y,
|
|
485
|
+
longitude=tide_gauge_point[0].x,
|
|
486
|
+
method="nearest",
|
|
487
|
+
)
|
|
488
|
+
|
|
489
|
+
# Calculate accuracy stats
|
|
490
|
+
gauge_stats = eval_metrics(x=measured_tides_ds.tide_m, y=modelled_tides_gauge)
|
|
491
|
+
|
|
492
|
+
# Assert pixel_tide outputs are accurate
|
|
493
|
+
assert gauge_stats["Correlation"] > 0.99
|
|
494
|
+
assert gauge_stats["RMSE"] < 0.26
|
|
495
|
+
assert gauge_stats["R-squared"] > 0.96
|
|
496
|
+
assert abs(gauge_stats["Bias"]) < 0.20
|
|
497
|
+
|
|
498
|
+
# Test spatially for a single timestep at corners of array
|
|
499
|
+
|
|
500
|
+
# Create test points, reproject to dataset CRS, and extract coords
|
|
501
|
+
# as xr.DataArrays so we can select data from our array
|
|
502
|
+
points = gpd.points_from_xy(
|
|
503
|
+
x=[122.14438, 122.30304, 122.12964, 122.29235],
|
|
504
|
+
y=[-17.91625, -17.92713, -18.07656, -18.08751],
|
|
505
|
+
crs="EPSG:4326",
|
|
506
|
+
).to_crs(satellite_ds.odc.geobox.crs)
|
|
507
|
+
x_coords = xr.DataArray(points.x, dims=["point"])
|
|
508
|
+
y_coords = xr.DataArray(points.y, dims=["point"])
|
|
509
|
+
|
|
510
|
+
# Extract modelled tides for each corner
|
|
511
|
+
try:
|
|
512
|
+
extracted_tides = modelled_tides_ds.sel(x=x_coords, y=y_coords, time="2020-01-29", method="nearest")
|
|
513
|
+
except KeyError:
|
|
514
|
+
extracted_tides = modelled_tides_ds.sel(
|
|
515
|
+
longitude=x_coords, latitude=y_coords, time="2020-01-29", method="nearest"
|
|
516
|
+
)
|
|
517
|
+
|
|
518
|
+
# Test if extracted tides match expected results (to within ~3 cm)
|
|
519
|
+
expected_tides = [-0.66, -0.76, -0.75, -0.82]
|
|
520
|
+
assert np.allclose(extracted_tides.values, expected_tides, atol=0.03)
|
|
@@ -0,0 +1,57 @@
|
|
|
1
|
+
import numpy as np
|
|
2
|
+
import pytest
|
|
3
|
+
|
|
4
|
+
from eo_tides.validation import load_gauge_gesla
|
|
5
|
+
|
|
6
|
+
GAUGE_X = 122.2183
|
|
7
|
+
GAUGE_Y = -18.0008
|
|
8
|
+
|
|
9
|
+
|
|
10
|
+
# Run test for different spatial searches
|
|
11
|
+
@pytest.mark.parametrize(
|
|
12
|
+
"x, y, site_code, max_distance, correct_mean, expected",
|
|
13
|
+
[
|
|
14
|
+
# Test nearest gauge lookup
|
|
15
|
+
(GAUGE_X, GAUGE_Y, None, None, False, ["62650"]),
|
|
16
|
+
(-117.4, 32.6, None, None, False, ["569A"]),
|
|
17
|
+
(152.0, -33.0, None, None, True, ["60370"]),
|
|
18
|
+
pytest.param(
|
|
19
|
+
GAUGE_X + 1, GAUGE_Y, None, 0.1, False, ["62650"], marks=pytest.mark.xfail(reason="No nearest gauge")
|
|
20
|
+
),
|
|
21
|
+
# Test bounding box lookup
|
|
22
|
+
((GAUGE_X - 0.2, GAUGE_X + 0.2), (GAUGE_Y - 0.2, GAUGE_Y + 0.2), None, None, False, ["62650"]),
|
|
23
|
+
((100, 160), (-5, -45), None, None, False, ["60370", "62650"]),
|
|
24
|
+
# Test site_code lookup
|
|
25
|
+
(None, None, "62650", None, False, ["62650"]),
|
|
26
|
+
(None, None, ["60370", "62650"], None, False, ["60370", "62650"]),
|
|
27
|
+
],
|
|
28
|
+
ids=[
|
|
29
|
+
"broome_xy",
|
|
30
|
+
"sandiego_xy",
|
|
31
|
+
"syd_xy_correctmean",
|
|
32
|
+
"no_nearest",
|
|
33
|
+
"broome_bbox",
|
|
34
|
+
"aus_bbox",
|
|
35
|
+
"broome_code",
|
|
36
|
+
"aus_code",
|
|
37
|
+
],
|
|
38
|
+
)
|
|
39
|
+
def test_load_gauge_gesla(x, y, site_code, max_distance, correct_mean, expected):
|
|
40
|
+
# Load gauge data
|
|
41
|
+
gauge_df = load_gauge_gesla(
|
|
42
|
+
x=x,
|
|
43
|
+
y=y,
|
|
44
|
+
site_code=site_code,
|
|
45
|
+
max_distance=max_distance,
|
|
46
|
+
correct_mean=correct_mean,
|
|
47
|
+
time=("2018-01-01", "2018-01-20"),
|
|
48
|
+
data_path="tests/data/",
|
|
49
|
+
metadata_path="tests/data/GESLA3_ALL 2.csv",
|
|
50
|
+
)
|
|
51
|
+
|
|
52
|
+
assert "sea_level" in gauge_df.columns
|
|
53
|
+
assert set(gauge_df.index.unique(level="site_code")) == set(expected)
|
|
54
|
+
|
|
55
|
+
# Verify that mean is near 0 after subtracting mean from time series
|
|
56
|
+
if correct_mean:
|
|
57
|
+
assert np.isclose(gauge_df.sea_level.mean().item(), 0.0, atol=0.01)
|