entitysdk 0.3.2__tar.gz → 0.5.0__tar.gz

{entitysdk-0.3.2/src/entitysdk.egg-info → entitysdk-0.5.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: entitysdk
-Version: 0.3.2
+Version: 0.5.0
 Summary: Python library for interacting with the entitycore service
 Author-email: Open Brain Institute <info@openbraininstitute.org>
 Maintainer-email: Open Brain Institute <info@openbraininstitute.org>
@@ -66,14 +66,14 @@ client = Client(
         project_id=UUID("your-project-id"),
         virtual_lab_id=UUID("your-lab-id")
     ),
-    environment="staging"
+    environment="staging",
+    token_manager=token
 )
 
 # Search for morphologies
 iterator = client.search_entity(
     entity_type=models.ReconstructionMorphology,
     query={"mtype__pref_label": "L5_TPC:A"},
-    token=token,
     limit=1,
 )
 morphology = next(iterator)
@@ -84,7 +84,6 @@ client.upload_file(
     entity_type=models.ReconstructionMorphology,
     file_path="path/to/file.swc",
     file_content_type="application/swc",
-    token="your-token"
 )
 ```
 

{entitysdk-0.3.2 → entitysdk-0.5.0}/README.md

@@ -45,14 +45,14 @@ client = Client(
         project_id=UUID("your-project-id"),
         virtual_lab_id=UUID("your-lab-id")
     ),
-    environment="staging"
+    environment="staging",
+    token_manager=token
 )
 
 # Search for morphologies
 iterator = client.search_entity(
     entity_type=models.ReconstructionMorphology,
     query={"mtype__pref_label": "L5_TPC:A"},
-    token=token,
     limit=1,
 )
 morphology = next(iterator)
@@ -63,7 +63,6 @@ client.upload_file(
     entity_type=models.ReconstructionMorphology,
     file_path="path/to/file.swc",
     file_content_type="application/swc",
-    token="your-token"
 )
 ```
 

{entitysdk-0.3.2 → entitysdk-0.5.0}/examples/01_searching.ipynb

@@ -28,8 +28,9 @@
     "    virtual_lab_id=\"a98b7abc-fc46-4700-9e3d-37137812c730\",\n",
     "    project_id=\"0dbced5f-cc3d-488a-8c7f-cfb8ea039dc6\",\n",
     ")\n",
-    "client = Client(api_url=entitycore_api_url, project_context=project_context)\n",
     "token = os.getenv(\"ACCESS_TOKEN\", \"XXX\")\n",
+    "client = Client(api_url=entitycore_api_url, project_context=project_context, token_manager=token)\n",
+    "\n",
     "\n",
     "# uncomment for staging\n",
     "# from obi_auth import get_token\n",
@@ -53,7 +54,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "all_species = client.search_entity(entity_type=Species, token=token).all()"
+    "all_species = client.search_entity(entity_type=Species).all()"
    ]
   },
   {
@@ -82,7 +83,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "all_strains = client.search_entity(entity_type=Strain, token=token).all()"
+    "all_strains = client.search_entity(entity_type=Strain).all()"
    ]
   },
   {
@@ -111,7 +112,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "all_roles = client.search_entity(entity_type=Role, token=token).all()"
+    "all_roles = client.search_entity(entity_type=Role).all()"
    ]
   },
   {
@@ -140,7 +141,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "all_users = client.search_entity(entity_type=Person, token=token).all()"
+    "all_users = client.search_entity(entity_type=Person).all()"
    ]
   },
   {
@@ -169,7 +170,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "all_orgs = client.search_entity(entity_type=Organization, token=token).all()"
+    "all_orgs = client.search_entity(entity_type=Organization).all()"
    ]
   },
   {
@@ -198,7 +199,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "all_mtypes = client.search_entity(entity_type=MTypeClass, token=token).all()"
+    "all_mtypes = client.search_entity(entity_type=MTypeClass).all()"
    ]
   },
   {
@@ -227,7 +228,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "morphs = client.search_entity(entity_type=ReconstructionMorphology, token=token, limit=10).all()"
+    "morphs = client.search_entity(entity_type=ReconstructionMorphology, limit=10).all()"
    ]
   },
   {
@@ -257,7 +258,7 @@
    "outputs": [],
    "source": [
     "morphs = client.search_entity(\n",
-    "    entity_type=ReconstructionMorphology, query={\"mtype__pref_label\": \"SR_PC\"}, token=token\n",
+    "    entity_type=ReconstructionMorphology, query={\"mtype__pref_label\": \"SR_PC\"}\n",
     ").all()"
    ]
   },
@@ -271,6 +272,14 @@
     "rprint(len(morphs))\n",
     "rprint(morphs[:2])"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4c41d5ae-81a6-4b01-965c-3f46a082cd31",
+   "metadata": {},
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {