endoreg-db 0.8.5.3__tar.gz → 0.8.5.5__tar.gz

{endoreg_db-0.8.5.3 → endoreg_db-0.8.5.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: endoreg-db
-Version: 0.8.5.3
+Version: 0.8.5.5
 Summary: EndoReg Db Django App
 Project-URL: Homepage, https://info.coloreg.de
 Project-URL: Repository, https://github.com/wg-lux/endoreg-db

endoreg_db-0.8.5.5/docs/api/VIDEO_EXAMINATION_API.md

@@ -0,0 +1,490 @@
+# Video Examination API - Complete Documentation
+
+## Overview
+This document describes the **Video Examination API** endpoints that enable the frontend `VideoExaminationAnnotation.vue` component to manage patient examinations within video annotations.
+
+## Issue 3 Resolution Summary
+
+### Problem
+The `VideoExaminationViewSet` was missing a `serializer_class` attribute, causing Django REST Framework to throw errors:
+```
+'VideoExaminationViewSet' should either include a `serializer_class` attribute
+```
+
+### Solution Implemented
+✅ **Created comprehensive serializers:**
+- `VideoExaminationSerializer` - Read-only serializer with nested data
+- `VideoExaminationCreateSerializer` - Handles complex creation logic
+- `VideoExaminationUpdateSerializer` - Handles partial updates
+
+✅ **Fixed ViewSet:**
+- Added `serializer_class = VideoExaminationSerializer`
+- Implemented `get_serializer_class()` for action-specific serializers
+- Added proper queryset with select_related/prefetch_related
+- Implemented filtering by video_id, patient_id, examination_id
+
+✅ **Added missing URL endpoint:**
+- `GET /api/video/{video_id}/examinations/` (frontend expects this)
+- Alternative: `GET /api/video-examinations/video/{video_id}/` (also works)
+
+---
+
+## API Endpoints
+
+### 1. List All Video Examinations
+**Endpoint:** `GET /api/video-examinations/`
+
+**Query Parameters:**
+- `video_id` (optional) - Filter by video ID
+- `patient_id` (optional) - Filter by patient ID  
+- `examination_id` (optional) - Filter by examination type ID
+
+**Response:**
+```json
+[
+  {
+    "id": 123,
+    "hash": "abc123def456",
+    "examination_id": 5,
+    "examination_name": "Colonoscopy",
+    "video_id": 90,
+    "patient_hash": "patient_hash_xyz",
+    "date_start": "2024-01-15",
+    "date_end": "2024-01-15",
+    "findings": [
+      {
+        "id": 1,
+        "finding_id": 42,
+        "finding_name": "Polyp",
+        "created_at": "2024-01-15T10:30:00Z"
+      }
+    ]
+  }
+]
+```
+
+**Example Usage:**
+```bash
+# Get all video examinations
+curl "http://localhost:8000/api/video-examinations/"
+
+# Get examinations for specific video
+curl "http://localhost:8000/api/video-examinations/?video_id=90"
+
+# Get examinations for specific patient
+curl "http://localhost:8000/api/video-examinations/?patient_id=123"
+```
+
+---
+
+### 2. Get Examinations for Specific Video (Frontend Expected)
+**Endpoint:** `GET /api/video/{video_id}/examinations/`
+
+This is the primary endpoint expected by `VideoExaminationAnnotation.vue`.
+
+**Path Parameters:**
+- `video_id` (required) - ID of the video
+
+**Response:** Same as list endpoint
+
+**Example Usage:**
+```bash
+# Get examinations for video 90 (frontend pattern)
+curl "http://localhost:8000/api/video/90/examinations/"
+```
+
+**Alternative Endpoint:**
+```bash
+# Also works via router action
+curl "http://localhost:8000/api/video-examinations/video/90/"
+```
+
+---
+
+### 3. Get Single Examination
+**Endpoint:** `GET /api/video-examinations/{id}/`
+
+**Path Parameters:**
+- `id` (required) - Examination ID
+
+**Response:**
+```json
+{
+  "id": 123,
+  "hash": "abc123def456",
+  "examination_id": 5,
+  "examination_name": "Colonoscopy",
+  "video_id": 90,
+  "patient_hash": "patient_hash_xyz",
+  "date_start": "2024-01-15",
+  "date_end": "2024-01-15",
+  "findings": []
+}
+```
+
+**Example Usage:**
+```bash
+curl "http://localhost:8000/api/video-examinations/123/"
+```
+
+---
+
+### 4. Create Video Examination
+**Endpoint:** `POST /api/video-examinations/`
+
+**Request Body:**
+```json
+{
+  "video_id": 90,
+  "examination_id": 5,
+  "date_start": "2024-01-15",
+  "date_end": "2024-01-15"
+}
+```
+
+**Required Fields:**
+- `video_id` - Must reference existing VideoFile
+- `examination_id` - Must reference existing Examination type
+
+**Optional Fields:**
+- `date_start` - Examination start date
+- `date_end` - Examination end date
+
+**Response:** 201 Created
+```json
+{
+  "id": 124,
+  "hash": "newly_generated_hash",
+  "examination_id": 5,
+  "examination_name": "Colonoscopy",
+  "video_id": 90,
+  "patient_hash": "patient_hash_xyz",
+  "date_start": "2024-01-15",
+  "date_end": "2024-01-15",
+  "findings": []
+}
+```
+
+**Business Logic:**
+1. Validates video exists
+2. Validates examination type exists
+3. Extracts patient from video's `SensitiveMeta.pseudo_patient`
+4. Creates or updates PatientExamination linking patient, examination, and video
+5. Auto-generates unique hash if not provided
+
+**Error Responses:**
+```json
+// 400 - Video has no sensitive metadata
+{
+  "non_field_errors": [
+    "Video must have sensitive metadata with patient information"
+  ]
+}
+
+// 404 - Video not found
+{
+  "video_id": ["Video with id 999 does not exist"]
+}
+
+// 404 - Examination type not found
+{
+  "examination_id": ["Examination with id 999 does not exist"]
+}
+```
+
+**Example Usage:**
+```bash
+curl -X POST "http://localhost:8000/api/video-examinations/" \
+  -H "Content-Type: application/json" \
+  -d '{
+    "video_id": 90,
+    "examination_id": 5,
+    "date_start": "2024-01-15"
+  }'
+```
+
+---
+
+### 5. Update Video Examination
+**Endpoint:** `PATCH /api/video-examinations/{id}/`
+
+**Path Parameters:**
+- `id` (required) - Examination ID to update
+
+**Request Body (all fields optional):**
+```json
+{
+  "examination_id": 6,
+  "date_start": "2024-01-16",
+  "date_end": "2024-01-16"
+}
+```
+
+**Response:** 200 OK (same structure as retrieve)
+
+**Example Usage:**
+```bash
+curl -X PATCH "http://localhost:8000/api/video-examinations/123/" \
+  -H "Content-Type: application/json" \
+  -d '{
+    "examination_id": 6,
+    "date_start": "2024-01-16"
+  }'
+```
+
+---
+
+### 6. Delete Video Examination
+**Endpoint:** `DELETE /api/video-examinations/{id}/`
+
+**Path Parameters:**
+- `id` (required) - Examination ID to delete
+
+**Response:** 204 No Content
+```json
+{
+  "message": "Examination 123 deleted successfully"
+}
+```
+
+**Example Usage:**
+```bash
+curl -X DELETE "http://localhost:8000/api/video-examinations/123/"
+```
+
+---
+
+## Database Models
+
+### PatientExamination
+```python
+class PatientExamination(models.Model):
+    patient = ForeignKey("Patient")          # From video.sensitive_meta.pseudo_patient
+    examination = ForeignKey("Examination")   # Examination type (Colonoscopy, etc.)
+    video = OneToOneField("VideoFile")       # Linked video
+    date_start = DateField(null=True)
+    date_end = DateField(null=True)
+    hash = CharField(unique=True)            # Auto-generated unique identifier
+```
+
+### Relationships
+```
+VideoFile (90)
+  └─> SensitiveMeta
+       └─> pseudo_patient (Patient)
+            └─> PatientExamination
+                 ├─> examination (Examination type: Colonoscopy)
+                 ├─> video (VideoFile 90) ← One-to-one back reference
+                 └─> patient_findings (PatientFinding[])
+```
+
+---
+
+## Frontend Integration
+
+### VideoExaminationAnnotation.vue Expected Behavior
+
+#### 1. Load Examinations on Video Selection
+```javascript
+// Frontend code (line 730)
+const response = await axiosInstance.get(r(`video/${selectedVideoId.value}/examinations/`))
+
+// Backend provides:
+// GET /api/video/90/examinations/
+// Returns: Array of PatientExamination with findings
+```
+
+#### 2. Create New Examination
+```javascript
+// When user annotates a new finding in video
+await axiosInstance.post(r('video-examinations/'), {
+  video_id: 90,
+  examination_id: selectedExamType.value,
+  date_start: new Date().toISOString().split('T')[0]
+})
+```
+
+#### 3. Update Examination
+```javascript
+// When user modifies examination details
+await axiosInstance.patch(r(`video-examinations/${examId}/`), {
+  examination_id: newExamType.value
+})
+```
+
+---
+
+## Testing Commands
+
+### Test with curl
+```bash
+# 1. Get examinations for video 90 (frontend pattern)
+curl "http://localhost:8000/api/video/90/examinations/"
+
+# 2. Get examinations for video 91 (alternative pattern)
+curl "http://localhost:8000/api/video-examinations/?video_id=91"
+
+# 3. Create examination for video 90
+curl -X POST "http://localhost:8000/api/video-examinations/" \
+  -H "Content-Type: application/json" \
+  -d '{
+    "video_id": 90,
+    "examination_id": 1,
+    "date_start": "2024-11-04"
+  }'
+
+# 4. Update examination
+curl -X PATCH "http://localhost:8000/api/video-examinations/1/" \
+  -H "Content-Type: application/json" \
+  -d '{"date_end": "2024-11-05"}'
+
+# 5. Delete examination
+curl -X DELETE "http://localhost:8000/api/video-examinations/1/"
+```
+
+### Test with Django shell
+```python
+from endoreg_db.models import VideoFile, Examination, PatientExamination
+
+# Get video with patient
+video = VideoFile.objects.get(id=90)
+print(f"Video: {video.uuid}")
+print(f"Patient: {video.sensitive_meta.pseudo_patient}")
+
+# Get available examination types
+exams = Examination.objects.all()
+for exam in exams:
+    print(f"ID: {exam.id}, Name: {exam.name}")
+
+# Create examination
+from endoreg_db.serializers import VideoExaminationCreateSerializer
+serializer = VideoExaminationCreateSerializer(data={
+    'video_id': 90,
+    'examination_id': 1,
+    'date_start': '2024-11-04'
+})
+if serializer.is_valid():
+    patient_exam = serializer.save()
+    print(f"Created: {patient_exam}")
+else:
+    print(f"Errors: {serializer.errors}")
+```
+
+---
+
+## Error Handling
+
+### Common Errors
+
+#### 400 Bad Request - Missing video metadata
+```json
+{
+  "non_field_errors": [
+    "Video must have sensitive metadata with patient information"
+  ]
+}
+```
+**Fix:** Ensure video has been processed and has SensitiveMeta with pseudo_patient.
+
+#### 404 Not Found - Video missing
+```json
+{
+  "video_id": ["Video with id 999 does not exist"]
+}
+```
+**Fix:** Verify video ID exists in database.
+
+#### 404 Not Found - Examination type missing
+```json
+{
+  "examination_id": ["Examination with id 999 does not exist"]
+}
+```
+**Fix:** Use valid examination type ID from `/api/examinations/`.
+
+---
+
+## Migration Path
+
+### For Existing Code Using Old Endpoint
+If your code was trying to use `/api/video-examinations/` and failing, no changes needed!  
+The endpoint now works correctly with proper serialization.
+
+### For Code Using Custom Video Examination Logic
+Replace custom logic with API calls:
+
+**Before:**
+```python
+# Custom video examination creation
+patient_exam = PatientExamination.objects.create(
+    patient=video.sensitive_meta.pseudo_patient,
+    examination=exam_type,
+    video=video
+)
+```
+
+**After:**
+```python
+# Use API endpoint
+from rest_framework.test import APIClient
+client = APIClient()
+response = client.post('/api/video-examinations/', {
+    'video_id': video.id,
+    'examination_id': exam_type.id
+})
+patient_exam_data = response.json()
+```
+
+---
+
+## Performance Considerations
+
+### Optimized Queries
+The ViewSet uses optimized querysets:
+```python
+queryset = PatientExamination.objects.select_related(
+    'patient', 'examination', 'video'
+).prefetch_related('patient_findings')
+```
+
+This prevents N+1 query problems when listing examinations.
+
+### Recommended Pagination
+For large datasets, add pagination:
+```python
+# In settings.py
+REST_FRAMEWORK = {
+    'DEFAULT_PAGINATION_CLASS': 'rest_framework.pagination.PageNumberPagination',
+    'PAGE_SIZE': 50
+}
+```
+
+---
+
+## Future Enhancements
+
+### Planned Features
+1. **Timestamp-based examinations** - Link findings to specific video timestamps
+2. **Bulk operations** - Create multiple examinations in one request
+3. **Export functionality** - Export examination data as CSV/JSON
+4. **Filtering improvements** - Filter by date range, examination type, etc.
+
+### API Versioning
+Consider API versioning for backwards compatibility:
+```
+/api/v1/video-examinations/
+/api/v2/video-examinations/  # Future version
+```
+
+---
+
+## Summary
+
+✅ **Issue 3 RESOLVED:**
+- VideoExaminationViewSet now has proper `serializer_class`
+- Frontend endpoint `/api/video/{id}/examinations/` works
+- Comprehensive CRUD operations implemented
+- Proper error handling and validation
+- Optimized database queries
+
+**Status:** Ready for production use with VideoExaminationAnnotation.vue frontend component.