endoreg-db 0.3.4__tar.gz → 0.3.5__tar.gz

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  1. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/PKG-INFO +1 -1
  2. endoreg_db-0.3.5/endoreg_db/data/__init__.py +65 -0
  3. endoreg_db-0.3.5/endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
  4. endoreg_db-0.3.5/endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
  5. endoreg_db-0.3.5/endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
  6. endoreg_db-0.3.5/endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
  7. endoreg_db-0.3.5/endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
  8. endoreg_db-0.3.5/endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
  9. endoreg_db-0.3.5/endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
  10. endoreg_db-0.3.5/endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
  11. endoreg_db-0.3.5/endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
  12. endoreg_db-0.3.5/endoreg_db/data/case_template/template/base.yaml +8 -0
  13. endoreg_db-0.3.5/endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
  14. endoreg_db-0.3.5/endoreg_db/data/case_template/tmp/_rule_value +13 -0
  15. endoreg_db-0.3.5/endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
  16. endoreg_db-0.3.5/endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
  17. endoreg_db-0.3.5/endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
  18. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/data/center/data.yaml +8 -0
  19. endoreg_db-0.3.5/endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
  20. endoreg_db-0.3.5/endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
  21. endoreg_db-0.3.5/endoreg_db/data/disease/cardiovascular.yaml +37 -0
  22. endoreg_db-0.3.5/endoreg_db/data/disease/hepatology.yaml +5 -0
  23. endoreg_db-0.3.5/endoreg_db/data/disease/misc.yaml +6 -0
  24. endoreg_db-0.3.5/endoreg_db/data/disease/renal.yaml +5 -0
  25. endoreg_db-0.3.5/endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
  26. endoreg_db-0.3.5/endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
  27. endoreg_db-0.3.5/endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
  28. endoreg_db-0.3.5/endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
  29. endoreg_db-0.3.5/endoreg_db/data/distribution/date/patient.yaml +7 -0
  30. endoreg_db-0.3.5/endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
  31. endoreg_db-0.3.5/endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
  32. endoreg_db-0.3.5/endoreg_db/data/event/cardiology.yaml +28 -0
  33. endoreg_db-0.3.5/endoreg_db/data/event/neurology.yaml +14 -0
  34. endoreg_db-0.3.5/endoreg_db/data/event/surgery.yaml +13 -0
  35. endoreg_db-0.3.5/endoreg_db/data/event/thrombembolism.yaml +20 -0
  36. endoreg_db-0.3.5/endoreg_db/data/examination/examinations/data.yaml +66 -0
  37. endoreg_db-0.3.5/endoreg_db/data/gender/data.yaml +18 -0
  38. endoreg_db-0.3.5/endoreg_db/data/information_source/medication.yaml +6 -0
  39. endoreg_db-0.3.5/endoreg_db/data/lab_value/cardiac_enzymes.yaml +31 -0
  40. endoreg_db-0.3.5/endoreg_db/data/lab_value/coagulation.yaml +49 -0
  41. endoreg_db-0.3.5/endoreg_db/data/lab_value/electrolytes.yaml +190 -0
  42. endoreg_db-0.3.5/endoreg_db/data/lab_value/gastrointestinal_function.yaml +121 -0
  43. endoreg_db-0.3.5/endoreg_db/data/lab_value/hematology.yaml +169 -0
  44. endoreg_db-0.3.5/endoreg_db/data/lab_value/hormones.yaml +53 -0
  45. endoreg_db-0.3.5/endoreg_db/data/lab_value/lipids.yaml +44 -0
  46. endoreg_db-0.3.5/endoreg_db/data/lab_value/misc.yaml +30 -0
  47. endoreg_db-0.3.5/endoreg_db/data/lab_value/renal_function.yaml +11 -0
  48. endoreg_db-0.3.5/endoreg_db/data/material/material.yaml +91 -0
  49. endoreg_db-0.3.5/endoreg_db/data/medication/anticoagulation.yaml +65 -0
  50. endoreg_db-0.3.5/endoreg_db/data/medication/tah.yaml +70 -0
  51. endoreg_db-0.3.5/endoreg_db/data/medication_indication/anticoagulation.yaml +120 -0
  52. endoreg_db-0.3.5/endoreg_db/data/medication_indication_type/data.yaml +11 -0
  53. endoreg_db-0.3.5/endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
  54. endoreg_db-0.3.5/endoreg_db/data/medication_intake_time/base.yaml +31 -0
  55. endoreg_db-0.3.5/endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
  56. endoreg_db-0.3.5/endoreg_db/data/medication_schedule/ass.yaml +12 -0
  57. endoreg_db-0.3.5/endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
  58. endoreg_db-0.3.5/endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
  59. endoreg_db-0.3.5/endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
  60. endoreg_db-0.3.5/endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
  61. endoreg_db-0.3.5/endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
  62. endoreg_db-0.3.5/endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
  63. endoreg_db-0.3.5/endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
  64. endoreg_db-0.3.5/endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
  65. endoreg_db-0.3.5/endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
  66. endoreg_db-0.3.5/endoreg_db/data/unit/concentration.yaml +92 -0
  67. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/data/unit/length.yaml +4 -4
  68. endoreg_db-0.3.5/endoreg_db/data/unit/misc.yaml +20 -0
  69. endoreg_db-0.3.5/endoreg_db/data/unit/rate.yaml +6 -0
  70. endoreg_db-0.3.5/endoreg_db/data/unit/time.yaml +13 -0
  71. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/data/unit/volume.yaml +13 -4
  72. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/data/unit/weight.yaml +11 -4
  73. endoreg_db-0.3.5/endoreg_db/data/waste/data.yaml +12 -0
  74. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/management/commands/load_base_db_data.py +58 -1
  75. endoreg_db-0.3.5/endoreg_db/management/commands/load_disease_classification_choices_data.py +41 -0
  76. endoreg_db-0.3.5/endoreg_db/management/commands/load_disease_classification_data.py +41 -0
  77. endoreg_db-0.3.5/endoreg_db/management/commands/load_disease_data.py +40 -0
  78. endoreg_db-0.3.5/endoreg_db/management/commands/load_distribution_data.py +66 -0
  79. endoreg_db-0.3.5/endoreg_db/management/commands/load_event_data.py +41 -0
  80. endoreg_db-0.3.5/endoreg_db/management/commands/load_g_play_data.py +113 -0
  81. endoreg_db-0.3.5/endoreg_db/management/commands/load_gender_data.py +44 -0
  82. endoreg_db-0.3.5/endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +133 -0
  83. endoreg_db-0.3.5/endoreg_db/management/commands/load_lab_value_data.py +50 -0
  84. endoreg_db-0.3.5/endoreg_db/management/commands/load_medication_data.py +41 -0
  85. endoreg_db-0.3.5/endoreg_db/management/commands/load_medication_indication_data.py +63 -0
  86. endoreg_db-0.3.5/endoreg_db/management/commands/load_medication_indication_type_data.py +41 -0
  87. endoreg_db-0.3.5/endoreg_db/management/commands/load_medication_intake_time_data.py +41 -0
  88. endoreg_db-0.3.5/endoreg_db/management/commands/load_medication_schedule_data.py +55 -0
  89. endoreg_db-0.3.5/endoreg_db/migrations/0025_event_alter_rawpdffile_file_patientevent.py +42 -0
  90. endoreg_db-0.3.5/endoreg_db/migrations/0026_disease_diseaseclassification_and_more.py +166 -0
  91. endoreg_db-0.3.5/endoreg_db/migrations/0027_labvalue_abbreviation_labvalue_default_normal_range_and_more.py +38 -0
  92. endoreg_db-0.3.5/endoreg_db/migrations/0028_alter_unit_abbreviation.py +18 -0
  93. endoreg_db-0.3.5/endoreg_db/migrations/0029_medicationintaketime_and_more.py +75 -0
  94. endoreg_db-0.3.5/endoreg_db/migrations/0030_medicationindicationtype_and_more.py +101 -0
  95. endoreg_db-0.3.5/endoreg_db/migrations/0031_rename_adapt_to_liver_function_medication_adapt_to_age_and_more.py +38 -0
  96. endoreg_db-0.3.5/endoreg_db/migrations/0032_alter_medicationschedule_therapy_duration_d.py +18 -0
  97. endoreg_db-0.3.5/endoreg_db/migrations/0033_medicationindication_sources.py +18 -0
  98. endoreg_db-0.3.5/endoreg_db/migrations/0034_alter_rawpdffile_file.py +20 -0
  99. endoreg_db-0.3.5/endoreg_db/migrations/0035_alter_medicationindication_sources.py +18 -0
  100. endoreg_db-0.3.5/endoreg_db/migrations/0036_alter_rawpdffile_file.py +20 -0
  101. endoreg_db-0.3.5/endoreg_db/migrations/0037_alter_medicationindication_sources.py +18 -0
  102. endoreg_db-0.3.5/endoreg_db/migrations/0038_emissionfactor_material_product_productgroup_and_more.py +164 -0
  103. endoreg_db-0.3.5/endoreg_db/migrations/0039_referenceproduct_name.py +19 -0
  104. endoreg_db-0.3.5/endoreg_db/migrations/0040_quizanswertype_quizquestiontype_quizquestion_and_more.py +50 -0
  105. endoreg_db-0.3.5/endoreg_db/migrations/0041_gender_patientmedication_medication_indication_and_more.py +40 -0
  106. endoreg_db-0.3.5/endoreg_db/migrations/0042_casetemplateruletype_casetemplaterulevalue_and_more.py +74 -0
  107. endoreg_db-0.3.5/endoreg_db/migrations/0043_casetemplatetype_name_de_casetemplatetype_name_en.py +23 -0
  108. endoreg_db-0.3.5/endoreg_db/migrations/0044_casetemplateruletype_name_de_and_more.py +23 -0
  109. endoreg_db-0.3.5/endoreg_db/migrations/0045_casetemplaterulevalue_value_type.py +19 -0
  110. endoreg_db-0.3.5/endoreg_db/migrations/0046_casetemplaterulevalue_target_field.py +18 -0
  111. endoreg_db-0.3.5/endoreg_db/migrations/0047_casetemplaterule_target_model.py +18 -0
  112. endoreg_db-0.3.5/endoreg_db/migrations/0048_remove_casetemplaterule_chained_rules_and_more.py +22 -0
  113. endoreg_db-0.3.5/endoreg_db/migrations/0049_remove_casetemplaterule_rule_values.py +17 -0
  114. endoreg_db-0.3.5/endoreg_db/migrations/0050_casetemplaterule_rule_values.py +18 -0
  115. endoreg_db-0.3.5/endoreg_db/migrations/0051_remove_casetemplaterule_calling_rules_and_more.py +27 -0
  116. endoreg_db-0.3.5/endoreg_db/migrations/0052_rename_case_template_type_casetemplate_template_type.py +18 -0
  117. endoreg_db-0.3.5/endoreg_db/migrations/0053_patientlabsampletype_patientlabsample_and_more.py +38 -0
  118. endoreg_db-0.3.5/endoreg_db/migrations/0054_multiplecategoricalvaluedistribution_and_more.py +69 -0
  119. endoreg_db-0.3.5/endoreg_db/migrations/0055_remove_casetemplaterule_rule_values_and_more.py +59 -0
  120. endoreg_db-0.3.5/endoreg_db/migrations/0056_datevaluedistribution_and_more.py +32 -0
  121. endoreg_db-0.3.5/endoreg_db/migrations/0057_remove_datevaluedistribution_max_date_and_more.py +72 -0
  122. endoreg_db-0.3.5/endoreg_db/migrations/0058_datevaluedistribution_description_and_more.py +28 -0
  123. endoreg_db-0.3.5/endoreg_db/migrations/0059_casetemplaterule_rule_values.py +18 -0
  124. endoreg_db-0.3.5/endoreg_db/migrations/0060_labvalue__default_date_value_distribution_and_more.py +44 -0
  125. endoreg_db-0.3.5/endoreg_db/migrations/0061_remove_patientlabvalue_date_patientlabvalue_datetime.py +24 -0
  126. endoreg_db-0.3.5/endoreg_db/migrations/0062_labvalue_numeric_precision.py +18 -0
  127. endoreg_db-0.3.5/endoreg_db/migrations/0063_alter_labvalue_numeric_precision.py +18 -0
  128. endoreg_db-0.3.5/endoreg_db/migrations/0064_casetemplaterule_extra_parameters_and_more.py +23 -0
  129. endoreg_db-0.3.5/endoreg_db/migrations/0065_rename__date_value_distribution_casetemplaterule_date_value_distribution_and_more.py +58 -0
  130. endoreg_db-0.3.5/endoreg_db/migrations/0066_alter_patientlabvalue_patient_and_more.py +29 -0
  131. endoreg_db-0.3.5/endoreg_db/migrations/0067_alter_medicationindication_indication_type.py +19 -0
  132. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/models/__init__.py +28 -11
  133. endoreg_db-0.3.5/endoreg_db/models/case_template/__init__.py +6 -0
  134. endoreg_db-0.3.5/endoreg_db/models/case_template/case_template.py +81 -0
  135. endoreg_db-0.3.5/endoreg_db/models/case_template/case_template_rule.py +276 -0
  136. endoreg_db-0.3.5/endoreg_db/models/case_template/case_template_rule_value.py +73 -0
  137. endoreg_db-0.3.5/endoreg_db/models/case_template/case_template_type.py +28 -0
  138. endoreg_db-0.3.5/endoreg_db/models/center/__init__.py +4 -0
  139. endoreg_db-0.3.5/endoreg_db/models/center/center_product.py +34 -0
  140. endoreg_db-0.3.5/endoreg_db/models/center/center_resource.py +19 -0
  141. endoreg_db-0.3.5/endoreg_db/models/center/center_waste.py +11 -0
  142. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/models/data_file/import_classes/raw_pdf.py +4 -1
  143. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/models/data_file/metadata/video_meta.py +4 -3
  144. endoreg_db-0.3.5/endoreg_db/models/disease.py +56 -0
  145. endoreg_db-0.3.5/endoreg_db/models/emission/__init__.py +1 -0
  146. endoreg_db-0.3.5/endoreg_db/models/emission/emission_factor.py +20 -0
  147. endoreg_db-0.3.5/endoreg_db/models/event.py +22 -0
  148. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/models/information_source.py +7 -0
  149. endoreg_db-0.3.5/endoreg_db/models/laboratory/__init__.py +1 -0
  150. endoreg_db-0.3.5/endoreg_db/models/laboratory/lab_value.py +102 -0
  151. endoreg_db-0.3.5/endoreg_db/models/medication/__init__.py +1 -0
  152. endoreg_db-0.3.5/endoreg_db/models/medication/medication.py +148 -0
  153. endoreg_db-0.3.5/endoreg_db/models/other/__init__.py +5 -0
  154. endoreg_db-0.3.5/endoreg_db/models/other/distribution.py +215 -0
  155. endoreg_db-0.3.5/endoreg_db/models/other/material.py +16 -0
  156. endoreg_db-0.3.5/endoreg_db/models/other/resource.py +18 -0
  157. endoreg_db-0.3.5/endoreg_db/models/other/transport_route.py +21 -0
  158. endoreg_db-0.3.5/endoreg_db/models/other/waste.py +20 -0
  159. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/models/persons/__init__.py +3 -2
  160. endoreg_db-0.3.5/endoreg_db/models/persons/gender.py +22 -0
  161. endoreg_db-0.3.5/endoreg_db/models/persons/patient/__init__.py +8 -0
  162. endoreg_db-0.3.5/endoreg_db/models/persons/patient/case/case.py +30 -0
  163. endoreg_db-0.3.5/endoreg_db/models/persons/patient/patient.py +216 -0
  164. endoreg_db-0.3.5/endoreg_db/models/persons/patient/patient_disease.py +16 -0
  165. endoreg_db-0.3.5/endoreg_db/models/persons/patient/patient_event.py +22 -0
  166. endoreg_db-0.3.5/endoreg_db/models/persons/patient/patient_lab_sample.py +106 -0
  167. endoreg_db-0.3.5/endoreg_db/models/persons/patient/patient_lab_value.py +176 -0
  168. endoreg_db-0.3.5/endoreg_db/models/persons/patient/patient_medication.py +44 -0
  169. endoreg_db-0.3.5/endoreg_db/models/persons/patient/patient_medication_schedule.py +28 -0
  170. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/models/persons/person.py +1 -4
  171. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/models/persons/portal_user_information.py +0 -2
  172. endoreg_db-0.3.5/endoreg_db/models/product/__init__.py +5 -0
  173. endoreg_db-0.3.5/endoreg_db/models/product/product.py +97 -0
  174. endoreg_db-0.3.5/endoreg_db/models/product/product_group.py +19 -0
  175. endoreg_db-0.3.5/endoreg_db/models/product/product_material.py +24 -0
  176. endoreg_db-0.3.5/endoreg_db/models/product/product_weight.py +26 -0
  177. endoreg_db-0.3.5/endoreg_db/models/product/reference_product.py +99 -0
  178. endoreg_db-0.3.5/endoreg_db/models/quiz/__init__.py +2 -0
  179. endoreg_db-0.3.5/endoreg_db/models/quiz/quiz_answer.py +41 -0
  180. endoreg_db-0.3.5/endoreg_db/models/quiz/quiz_question.py +54 -0
  181. endoreg_db-0.3.5/endoreg_db/models/rules/__init__.py +5 -0
  182. endoreg_db-0.3.5/endoreg_db/models/rules/rule.py +24 -0
  183. endoreg_db-0.3.5/endoreg_db/models/rules/rule_applicator.py +224 -0
  184. endoreg_db-0.3.5/endoreg_db/models/rules/rule_attribute_dtype.py +19 -0
  185. endoreg_db-0.3.5/endoreg_db/models/rules/rule_type.py +22 -0
  186. endoreg_db-0.3.5/endoreg_db/models/rules/ruleset.py +19 -0
  187. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/models/unit.py +6 -4
  188. endoreg_db-0.3.5/endoreg_db/queries/get/video_import_meta.py +0 -0
  189. endoreg_db-0.3.5/endoreg_db/queries/get/video_prediction_meta.py +0 -0
  190. endoreg_db-0.3.5/endoreg_db/queries/sanity/__init_.py +0 -0
  191. endoreg_db-0.3.5/endoreg_db/utils/dataloader.py +92 -0
  192. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/pyproject.toml +1 -1
  193. endoreg_db-0.3.4/endoreg_db/data/__init__.py +0 -16
  194. endoreg_db-0.3.4/endoreg_db/data/examination/examinations/data.yaml +0 -17
  195. endoreg_db-0.3.4/endoreg_db/models/persons/patient.py +0 -58
  196. endoreg_db-0.3.4/endoreg_db/models.py +0 -3
  197. endoreg_db-0.3.4/endoreg_db/utils/dataloader.py +0 -185
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  274. /endoreg_db-0.3.4/endoreg_db/queries/get/prediction.py → /endoreg_db-0.3.5/endoreg_db/migrations/__init__.py +0 -0
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  348. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/serializers/label.py +0 -0
  349. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/serializers/patient.py +0 -0
  350. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/serializers/prediction.py +0 -0
  351. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/serializers/report_file.py +0 -0
  352. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/serializers/video.py +0 -0
  353. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/tests.py +0 -0
  354. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/utils/__init__.py +0 -0
  355. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/utils/cropping.py +0 -0
  356. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/utils/file_operations.py +0 -0
  357. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/utils/hashs.py +0 -0
  358. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/utils/legacy_ocr.py +0 -0
  359. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/utils/ocr.py +0 -0
  360. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/utils/uuid.py +0 -0
  361. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/utils/video_metadata.py +0 -0
  362. {endoreg_db-0.3.4 → endoreg_db-0.3.5}/endoreg_db/views.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: endoreg-db
3
- Version: 0.3.4
3
+ Version: 0.3.5
4
4
  Summary: EndoReg Db Django App
5
5
  License: GNU3
6
6
  Author: Thomas J. Lux
@@ -0,0 +1,65 @@
1
+ from pathlib import Path
2
+
3
+ DATA_DIR = Path(__file__).parent
4
+
5
+ INFORMATION_DATA_DIR = DATA_DIR / "information_source"
6
+ UNIT_DATA_DIR = DATA_DIR / "unit"
7
+ CENTER_DATA_DIR = DATA_DIR / "center"
8
+ EXAMINATION_DATA_DIR = DATA_DIR / "examination"
9
+ LABEL_DATA_DIR = DATA_DIR / "label"
10
+ MODEL_TYPE_DATA_DIR = DATA_DIR / "model_type"
11
+ ENDOSCOPY_PROCESSOR_DATA_DIR = DATA_DIR / "endoscopy_processor"
12
+ ENDOSCOPE_TYPE_DATA_DIR = DATA_DIR / "endoscope_type"
13
+ ACTIVE_MODEL_DATA_DIR = DATA_DIR / "active_model"
14
+ PROFESSION_DATA_DIR = DATA_DIR / "profession"
15
+ PDF_TYPE_DATA_DIR = DATA_DIR / "pdf_type"
16
+ REPORT_READER_FLAG_DATA_DIR = DATA_DIR / "report_reader_flag"
17
+ EVENT_DATA_DIR = DATA_DIR / "event"
18
+ GENDER_DATA_DIR = DATA_DIR / "gender"
19
+
20
+ # Green Endoscopy Dashboard Stuffs
21
+ CENTER_RESOURCE_DATA_DIR = DATA_DIR / "center_resource"
22
+ CENTER_WASTE_DATA_DIR = DATA_DIR / "center_waste"
23
+ EMISSION_FACTOR_DATA_DIR = DATA_DIR / "emission_factor"
24
+ MATERIAL_DATA_DIR = DATA_DIR / "material"
25
+ PRODUCT_DATA_DIR = DATA_DIR / "product"
26
+ PRODUCT_GROUP_DATA_DIR = DATA_DIR / "product_group"
27
+ PRODUCT_MATERIAL_DATA_DIR = DATA_DIR / "product_material"
28
+ PRODUCT_WEIGHT_DATA_DIR = DATA_DIR / "product_weight"
29
+ REFERENCE_PRODUCT_DATA_DIR = DATA_DIR / "reference_product"
30
+ RESOURCE_DATA_DIR = DATA_DIR / "resource"
31
+ WASTE_DATA_DIR = DATA_DIR / "waste"
32
+ TRANSPORT_ROUTE_DATA_DIR = DATA_DIR / "transport_route"
33
+ DISEASE_CLASSIFICATION_DATA_DIR = DATA_DIR / "disease_classification"
34
+ DISEASE_CLASSIFICATION_CHOICE_DATA_DIR = DATA_DIR / "disease_classification_choice"
35
+ DISEASE_DATA_DIR = DATA_DIR / "disease"
36
+ MEDICATION_DATA_DIR = DATA_DIR / "medication"
37
+ MEDICATION_INDICATION_DATA_DIR = DATA_DIR / "medication_indication"
38
+ MEDICATION_INDICATION_TYPE_DATA_DIR = DATA_DIR / "medication_indication_type"
39
+
40
+ DISTRIBUTION_BASE_DIR = DATA_DIR / "distribution"
41
+ DISTRIBUTION_SINGLE_CATEGORICAL_DATA_DIR = DISTRIBUTION_BASE_DIR / "single_categorical"
42
+ DISTRIBUTION_NUMERIC_DATA_DIR = DISTRIBUTION_BASE_DIR / "numeric"
43
+ DISTRIBUTION_MULTIPLE_CATEGORICAL_DATA_DIR = DISTRIBUTION_BASE_DIR / "multiple_categorical"
44
+ DISTRIBUTION_DATE_DATA_DIR = DISTRIBUTION_BASE_DIR / "date"
45
+
46
+ # G-Play Stuffs
47
+ CASE_TEMPLATE_BASE_DIR = DATA_DIR / "case_template"
48
+ CASE_TEMPLATE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "template"
49
+ CASE_TEMPLATE_TYPE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "template_type"
50
+ CASE_TEMPLATE_RULE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule"
51
+ CASE_TEMPLATE_RULE_TYPE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule_type"
52
+ CASE_TEMPLATE_RULE_VALUE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule_value"
53
+ CASE_TEMPLATE_RULE_VALUE_TYPE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule_value_type"
54
+
55
+
56
+ # To Do
57
+ LAB_VALUE_DATA_DIR = DATA_DIR / "lab_value"
58
+ PATIENT_LAB_SAMPLE_TYPE_DATA_DIR = DATA_DIR / "patient_lab_sample_type"
59
+ MEDICATION_SCHEDULE_DATA_DIR = DATA_DIR / "medication_schedule"
60
+ MEDICATION_INTAKE_TIME_DATA_DIR = DATA_DIR / "medication_intake_time"
61
+
62
+
63
+ RULE_TYPE_DATA_DIR = DATA_DIR / "rule_type"
64
+ RULE_ATTRIBUTE_DTYPE_DATA_DIR = DATA_DIR / "rule_attribute_dtype"
65
+ RULESET_DATA_DIR = DATA_DIR / "ruleset"
@@ -0,0 +1,167 @@
1
+ - model: endoreg_db.case_template_rule
2
+ fields:
3
+ name: "patient_lab_sample-add_value-sodium-default"
4
+ rule_type: "create-object"
5
+ parent_model: "PatientLabSample"
6
+ parent_field: "sample"
7
+ target_model: "PatientLabValue"
8
+ extra_parameters: {
9
+ "create_method": {
10
+ "name": "create_lab_value_by_sample",
11
+ "kwargs": {
12
+ "lab_value_name": "sodium",
13
+ }
14
+ },
15
+ "actions": [
16
+ {
17
+ "name": "set_value_by_distribution",
18
+ "kwargs": {}
19
+ }
20
+ ]
21
+
22
+ }
23
+
24
+ # potassium
25
+ - model: endoreg_db.case_template_rule
26
+ fields:
27
+ name: "patient_lab_sample-add_value-potassium-default"
28
+ rule_type: "create-object"
29
+ parent_model: "PatientLabSample"
30
+ parent_field: "sample"
31
+ target_model: "PatientLabValue"
32
+ extra_parameters: {
33
+ "create_method": {
34
+ "name": "create_lab_value_by_sample",
35
+ "kwargs": {
36
+ "lab_value_name": "potassium",
37
+ }
38
+ },
39
+ "actions": [
40
+ {
41
+ "name": "set_value_by_distribution",
42
+ "kwargs": {}
43
+ }
44
+ ]
45
+
46
+ }
47
+
48
+ - model: endoreg_db.case_template_rule
49
+ fields:
50
+ name: "patient_lab_sample-add_value-hemoglobin-default"
51
+ rule_type: "create-object"
52
+ parent_model: "PatientLabSample"
53
+ parent_field: "sample"
54
+ target_model: "PatientLabValue"
55
+ extra_parameters: {
56
+ "create_method": {
57
+ "name": "create_lab_value_by_sample",
58
+ "kwargs": {
59
+ "lab_value_name": "hemoglobin",
60
+ }
61
+ },
62
+ "actions": [
63
+ {
64
+ "name": "set_value_by_distribution",
65
+ "kwargs": {}
66
+ }
67
+ ]
68
+
69
+ }
70
+
71
+ # hematocrit
72
+ - model: endoreg_db.case_template_rule
73
+ fields:
74
+ name: "patient_lab_sample-add_value-hematocrit-default"
75
+ rule_type: "create-object"
76
+ parent_model: "PatientLabSample"
77
+ parent_field: "sample"
78
+ target_model: "PatientLabValue"
79
+ extra_parameters: {
80
+ "create_method": {
81
+ "name": "create_lab_value_by_sample",
82
+ "kwargs": {
83
+ "lab_value_name": "hematocrit",
84
+ }
85
+ },
86
+ "actions": [
87
+ {
88
+ "name": "set_value_by_distribution",
89
+ "kwargs": {}
90
+ }
91
+ ]
92
+
93
+ }
94
+
95
+ # platelet count
96
+ - model: endoreg_db.case_template_rule
97
+ fields:
98
+ name: "patient_lab_sample-add_value-platelets-default"
99
+ rule_type: "create-object"
100
+ parent_model: "PatientLabSample"
101
+ parent_field: "sample"
102
+ target_model: "PatientLabValue"
103
+ extra_parameters: {
104
+ "create_method": {
105
+ "name": "create_lab_value_by_sample",
106
+ "kwargs": {
107
+ "lab_value_name": "platelets",
108
+ }
109
+ },
110
+ "actions": [
111
+ {
112
+ "name": "set_value_by_distribution",
113
+ "kwargs": {}
114
+ }
115
+ ]
116
+
117
+ }
118
+
119
+ # white cell count
120
+ - model: endoreg_db.case_template_rule
121
+ fields:
122
+ name: "patient_lab_sample-add_value-white_blood_cells-default"
123
+ rule_type: "create-object"
124
+ parent_model: "PatientLabSample"
125
+ parent_field: "sample"
126
+ target_model: "PatientLabValue"
127
+ extra_parameters: {
128
+ "create_method": {
129
+ "name": "create_lab_value_by_sample",
130
+ "kwargs": {
131
+ "lab_value_name": "white_blood_cells",
132
+ }
133
+ },
134
+ "actions": [
135
+ {
136
+ "name": "set_value_by_distribution",
137
+ "kwargs": {}
138
+ }
139
+ ]
140
+
141
+ }
142
+
143
+ # estimated glomerular filtration rate
144
+ - model: endoreg_db.case_template_rule
145
+ fields:
146
+ name: "patient_lab_sample-add_value-egfr-default"
147
+ rule_type: "create-object"
148
+ parent_model: "PatientLabSample"
149
+ parent_field: "sample"
150
+ target_model: "PatientLabValue"
151
+ extra_parameters: {
152
+ "create_method": {
153
+ "name": "create_lab_value_by_sample",
154
+ "kwargs": {
155
+ "lab_value_name": "estimated_glomerular_filtration_rate",
156
+ }
157
+ },
158
+ "actions": [
159
+ {
160
+ "name": "set_value_by_distribution",
161
+ "kwargs": {}
162
+ }
163
+ ]
164
+
165
+ }
166
+
167
+
@@ -0,0 +1,8 @@
1
+ - model: endoreg_db.case_template_rule
2
+ fields:
3
+ name: "patient-set-age-screening_colo_population"
4
+ rule_type: "set-field-by_distribution"
5
+ parent_model: "Patient"
6
+ target_field: "dob"
7
+ value_type: "date"
8
+ date_value_distribution: "age-screening_colo_population"
@@ -0,0 +1,9 @@
1
+ - model: endoreg_db.case_template_rule
2
+ fields:
3
+ name: "patient-set-gender-random"
4
+ rule_type: "set-field-by_distribution"
5
+ parent_model: "Patient"
6
+ target_field: "gender"
7
+ target_model: "Gender"
8
+ value_type: "foreign_key"
9
+ single_categorical_value_distribution: "gender-random"
@@ -0,0 +1,23 @@
1
+ - model: endoreg_db.case_template_rule
2
+ fields:
3
+ name: "create-patient_lab_sample-default"
4
+ rule_type: "create-object"
5
+ target_model: "PatientLabSample"
6
+ parent_field: "patient"
7
+ chained_rules: [
8
+ "patient_lab_sample-add_value-sodium-default",
9
+ "patient_lab_sample-add_value-potassium-default",
10
+ "patient_lab_sample-add_value-egfr-default",
11
+ "patient_lab_sample-add_value-hemoglobin-default",
12
+ "patient_lab_sample-add_value-hematocrit-default",
13
+ "patient_lab_sample-add_value-platelets-default",
14
+ "patient_lab_sample-add_value-white_blood_cells-default"
15
+ ]
16
+ extra_parameters: {
17
+ "create_method": {
18
+ "name": "create_by_patient",
19
+ "kwargs": {
20
+ "sample_type": "generic"
21
+ }
22
+ }
23
+ }
@@ -0,0 +1,19 @@
1
+ - model: endoreg_db.case_template_rule
2
+ fields:
3
+ name: "create-patient_medication_schedule-anticoagulation-non_valvular_af"
4
+ rule_type: "create-object"
5
+ target_model: "PatientMedication"
6
+ parent_field: "patient"
7
+
8
+ chained_rules: [
9
+
10
+ ]
11
+
12
+ extra_parameters: {
13
+ "create_method": {
14
+ "name": "create_by_patient_and_indication_type",
15
+ "kwargs": {
16
+ "indication_type": "thromboembolism-prevention-non_valvular_af"
17
+ }
18
+ }
19
+ }
@@ -0,0 +1,19 @@
1
+ - model: endoreg_db.case_template_rule
2
+ fields:
3
+ name: "create-patient_medication_schedule-anticoagulation-non_valvular_af"
4
+ rule_type: "create-object"
5
+ target_model: "PatientMedicationSchedule"
6
+ parent_field: "patient"
7
+
8
+ chained_rules: [
9
+
10
+ ]
11
+
12
+ extra_parameters: {
13
+ "create_method": {
14
+ "name": "create_by_patient_and_indication_type",
15
+ "kwargs": {
16
+ "indication_type": "thromboembolism-prevention-non_valvular_af"
17
+ }
18
+ }
19
+ }
@@ -0,0 +1,17 @@
1
+ - model: endoreg_db.case_template_rule
2
+ fields:
3
+ name: "create-patient-default"
4
+ rule_type: "create-object"
5
+ target_model: "Patient"
6
+ chained_rules: [
7
+ "patient-set-age-screening_colo_population",
8
+ "create-patient_lab_sample-default"
9
+ ]
10
+ extra_parameters: {
11
+ "create_method": {
12
+ "name": "create_generic",
13
+ "kwargs": {
14
+ "center": "gplay_case_generator",
15
+ }
16
+ }
17
+ }
@@ -0,0 +1,35 @@
1
+ - model: endoreg_db.case_template_rule_type
2
+ fields:
3
+ name: "set-field-default"
4
+ name_de: "Default Wert eines Feldes setzen"
5
+ name_en: "Set value of field"
6
+
7
+ - model: endoreg_db.case_template_rule_type
8
+ fields:
9
+ name: "set-field-by_distribution"
10
+ name_de: "Wert eines Feldes anhand einer Verteilung setzen"
11
+ name_en: "Set value of field by distribution"
12
+
13
+ - model: endoreg_db.case_template_rule_type
14
+ fields:
15
+ name: "set-field-by_value"
16
+ name_de: "Wert eines Feldes auf einen bestimmten Wert setzen"
17
+ name_en: "Set value of field to a specific value"
18
+
19
+ - model: endoreg_db.case_template_rule_type
20
+ fields:
21
+ name: "set-field-single_choice"
22
+ name_de: "Wert eines Feldes auf einen bestimmten Wert anhand einer Auswahl setzen"
23
+ name_en: "Set value of field to a specific value based on a choice"
24
+
25
+ - model: endoreg_db.case_template_rule_type
26
+ fields:
27
+ name: "set-field-multiple_choice"
28
+ name_de: "Wert eines Feldes auf einen bestimmten Wert anhand einer Mehrfachauswahl setzen"
29
+ name_en: "Set value of field to a specific value based on a multiple choice"
30
+
31
+ - model: endoreg_db.case_template_rule_type
32
+ fields:
33
+ name: "create-object"
34
+ name_de: "Datenbank Objekt erstellen"
35
+ name_en: "Create Db Object"
@@ -0,0 +1,59 @@
1
+ - model: endoreg_db.case_template_rule_value_type
2
+ fields:
3
+ name: "foreign_key"
4
+ distribution_type: "single_categorical"
5
+
6
+ - model: endoreg_db.case_template_rule_value_type
7
+ fields:
8
+ name: "many_to_many"
9
+ distribution_type: "multiple_categorical"
10
+
11
+ - model: endoreg_db.case_template_rule_value_type
12
+ fields:
13
+ name: "object"
14
+ distribution_type: "single_categorical"
15
+
16
+ - model: endoreg_db.case_template_rule_value_type
17
+ fields:
18
+ name: "date"
19
+ distribution_type: "numeric"
20
+
21
+ - model: endoreg_db.case_template_rule_value_type
22
+ fields:
23
+ name: "integer"
24
+ distribution_type: "numeric"
25
+
26
+ - model: endoreg_db.case_template_rule_value_type
27
+ fields:
28
+ name: "string"
29
+ distribution_type: "numeric"
30
+
31
+ - model: endoreg_db.case_template_rule_value_type
32
+ fields:
33
+ name: "boolean"
34
+ distribution_type: "numeric"
35
+
36
+ - model: endoreg_db.case_template_rule_value_type
37
+ fields:
38
+ name: "float"
39
+ distribution_type: "numeric"
40
+
41
+ - model: endoreg_db.case_template_rule_value_type
42
+ fields:
43
+ name: "text"
44
+ distribution_type: "numeric"
45
+
46
+ - model: endoreg_db.case_template_rule_value_type
47
+ fields:
48
+ name: "integer_range"
49
+ distribution_type: "numeric"
50
+
51
+ - model: endoreg_db.case_template_rule_value_type
52
+ fields:
53
+ name: "float_range"
54
+ distribution_type: "numeric"
55
+
56
+ - model: endoreg_db.case_template_rule_value_type
57
+ fields:
58
+ name: "date_range"
59
+ distribution_type: "numeric"
@@ -0,0 +1,8 @@
1
+ - model: endoreg_db.case_template
2
+ fields:
3
+ name: "pre_default_screening_colonoscopy"
4
+ rules: [
5
+ "create-patient-default",
6
+ "create-patient_medication_schedule-anticoagulation-non_valvular_af",
7
+ ]
8
+ template_type: "pre_endoscopy"
@@ -0,0 +1,3 @@
1
+ - model: endoreg_db.case_template_type
2
+ fields:
3
+ name: "pre_endoscopy"
@@ -0,0 +1,13 @@
1
+ - model: endoreg_db.case_template_rule_value
2
+ fields:
3
+ name: "diagnosis_value-non_valvular_atrial-fibrillation"
4
+ target_field: "disease"
5
+ value_type: "foreign_key"
6
+ fk_value: "non_valvular_atrial_fibrillation"
7
+
8
+ - model: endoreg_db.case_template_rule_value
9
+ fields:
10
+ name: "medication_schedule-apixaban-5mg-twice_daily"
11
+ target_field: "medication_indication"
12
+ value_type: "foreign_key"
13
+ fk_value: "te_prevention-recurrent-te-apixaban"
@@ -0,0 +1,21 @@
1
+
2
+ - model: endoreg_db.case_template_rule
3
+ fields:
4
+ name: "patient-add_medication_indication-anticoagulation-non_valvular_af"
5
+ rule_type: "add_one_value"
6
+ target_model: "endoreg_db.patient_medication_indication"
7
+ rule_values: [
8
+ "medication_schedule-apixaban-5mg-twice_daily"
9
+ ]
10
+
11
+ - model: endoreg_db.case_template_rule
12
+ fields:
13
+ name: "patient_add_diagnosis_atrial-fibrillation"
14
+ rule_type: "add_one_value"
15
+ target_model: "endoreg_db.patient_disease"
16
+ rule_values: [
17
+ "diagnosis_value-non_valvular_atrial-fibrillation"
18
+ ]
19
+ chained_rules: [
20
+ "patient-add_medication_indication-anticoagulation-non_valvular_af"
21
+ ]
@@ -0,0 +1,10 @@
1
+ - model: endoreg_db.case_template_rule
2
+ fields:
3
+ name: "create-patient-screening_colo"
4
+ rule_type: "create_object"
5
+ target_model: "Patient"
6
+ rule_value_type: "object"
7
+ target_field: null
8
+ chained_rules: [
9
+ "patient-set-gender-random"
10
+ ]
@@ -0,0 +1,7 @@
1
+ - model: endoreg_db.case_template_type
2
+ fields:
3
+ name: "pre_endo-anticoagulation-af-low_risk"
4
+ template_type: "pre_endoscopy"
5
+ rules: [
6
+ "patient_add_diagnosis_atrial-fibrillation"
7
+ ]
@@ -50,3 +50,11 @@
50
50
  name_en: "Robert Bosch Hospital Stuttgart"
51
51
  first_names: [] # many to many; if foreign key, we would just have a string; strings represent "name" attribute
52
52
  last_names: []
53
+
54
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@@ -0,0 +1,144 @@
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