ena-upload-cli 0.7.2__tar.gz → 0.7.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (110) hide show
  1. {ena_upload_cli-0.7.2/ena_upload_cli.egg-info → ena_upload_cli-0.7.4}/PKG-INFO +2 -2
  2. ena_upload_cli-0.7.4/ena_upload/_version.py +1 -0
  3. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4/ena_upload_cli.egg-info}/PKG-INFO +2 -2
  4. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload_cli.egg-info/requires.txt +1 -1
  5. ena_upload_cli-0.7.4/requirements.txt +9 -0
  6. ena_upload_cli-0.7.2/ena_upload/_version.py +0 -1
  7. ena_upload_cli-0.7.2/requirements.txt +0 -8
  8. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/LICENSE +0 -0
  9. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/MANIFEST.in +0 -0
  10. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/README.md +0 -0
  11. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/__init__.py +0 -0
  12. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/check_remote.py +0 -0
  13. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/ena_upload.py +0 -0
  14. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/__init__.py +0 -0
  15. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/characteristic.py +0 -0
  16. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/ena_experiment.py +0 -0
  17. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/ena_run.py +0 -0
  18. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/ena_sample.py +0 -0
  19. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/ena_std_lib.py +0 -0
  20. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/ena_study.py +0 -0
  21. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/ena_submission.py +0 -0
  22. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/assay_schema.json +0 -0
  23. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/comment_schema.json +0 -0
  24. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/data_schema.json +0 -0
  25. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/factor_schema.json +0 -0
  26. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/factor_value_schema.json +0 -0
  27. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/investigation_schema.json +0 -0
  28. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/material_attribute_schema.json +0 -0
  29. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/material_attribute_value_schema.json +0 -0
  30. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/material_schema.json +0 -0
  31. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/ontology_annotation_schema.json +0 -0
  32. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/ontology_source_reference_schema.json +0 -0
  33. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/organization_schema.json +0 -0
  34. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/person_schema.json +0 -0
  35. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/process_parameter_value_schema.json +0 -0
  36. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/process_schema.json +0 -0
  37. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/protocol_parameter_schema.json +0 -0
  38. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/protocol_schema.json +0 -0
  39. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/publication_schema.json +0 -0
  40. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/sample_schema.json +0 -0
  41. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/source_schema.json +0 -0
  42. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/json_schemas/study_schema.json +0 -0
  43. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/json_parsing/other_material.py +0 -0
  44. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA.project.xsd +0 -0
  45. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_FILE.xml +0 -0
  46. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_LIBRARY_SELECTION.xml +0 -0
  47. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_LIBRARY_SOURCE.xml +0 -0
  48. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_LIBRARY_STRATEGY.xml +0 -0
  49. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_PLATFORM.xml +0 -0
  50. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_experiments.xml +0 -0
  51. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_runs.xml +0 -0
  52. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000011.xml +0 -0
  53. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000012.xml +0 -0
  54. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000013.xml +0 -0
  55. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000014.xml +0 -0
  56. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000015.xml +0 -0
  57. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000016.xml +0 -0
  58. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000017.xml +0 -0
  59. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000018.xml +0 -0
  60. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000019.xml +0 -0
  61. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000020.xml +0 -0
  62. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000021.xml +0 -0
  63. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000022.xml +0 -0
  64. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000023.xml +0 -0
  65. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000024.xml +0 -0
  66. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000025.xml +0 -0
  67. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000027.xml +0 -0
  68. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000028.xml +0 -0
  69. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000029.xml +0 -0
  70. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000030.xml +0 -0
  71. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000031.xml +0 -0
  72. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000032.xml +0 -0
  73. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000033.xml +0 -0
  74. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000034.xml +0 -0
  75. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000035.xml +0 -0
  76. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000036.xml +0 -0
  77. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000037.xml +0 -0
  78. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000038.xml +0 -0
  79. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000039.xml +0 -0
  80. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000040.xml +0 -0
  81. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000041.xml +0 -0
  82. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000043.xml +0 -0
  83. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000044.xml +0 -0
  84. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000045.xml +0 -0
  85. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000047.xml +0 -0
  86. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000048.xml +0 -0
  87. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000049.xml +0 -0
  88. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000050.xml +0 -0
  89. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000051.xml +0 -0
  90. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000052.xml +0 -0
  91. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000053.xml +0 -0
  92. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000055.xml +0 -0
  93. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000056.xml +0 -0
  94. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000057.xml +0 -0
  95. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_samples_ERC000058.xml +0 -0
  96. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_studies.xml +0 -0
  97. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/ENA_template_submission.xml +0 -0
  98. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/SRA.common.xsd +0 -0
  99. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/SRA.experiment.xsd +0 -0
  100. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/SRA.run.xsd +0 -0
  101. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/SRA.sample.xsd +0 -0
  102. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/SRA.study.xsd +0 -0
  103. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload/templates/SRA.submission.xsd +0 -0
  104. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload_cli.egg-info/SOURCES.txt +0 -0
  105. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload_cli.egg-info/dependency_links.txt +0 -0
  106. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload_cli.egg-info/entry_points.txt +0 -0
  107. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload_cli.egg-info/top_level.txt +0 -0
  108. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/setup.cfg +0 -0
  109. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/setup.py +0 -0
  110. {ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/tests/test_ena_objects.py +0 -0
{ena_upload_cli-0.7.2/ena_upload_cli.egg-info → ena_upload_cli-0.7.4}/PKG-INFO RENAMED
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  Metadata-Version: 2.1
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  Name: ena-upload-cli
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- Version: 0.7.2
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+ Version: 0.7.4
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  Summary: Command Line Interface to upload data to the European Nucleotide Archive
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  Home-page: https://github.com/usegalaxy-eu/ena-upload-cli
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  Author: Dilmurat Yusuf
@@ -14,7 +14,7 @@ License-File: LICENSE
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  Requires-Dist: genshi==0.7.*
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  Requires-Dist: lxml<=5.0.0,>=4.9.3
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  Requires-Dist: pandas<=3.0.0,>=2.0.3
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- Requires-Dist: pyyaml==5.*
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+ Requires-Dist: pyyaml==5.3.*
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  Requires-Dist: requests<=3.0.0,>=2.31.0
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  Requires-Dist: openpyxl<=4.0.0,>=3.1.2
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ena_upload_cli-0.7.4/ena_upload/_version.py ADDED
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+ __version__ = "0.7.4"
{ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4/ena_upload_cli.egg-info}/PKG-INFO RENAMED
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  Name: ena-upload-cli
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- Version: 0.7.2
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  Summary: Command Line Interface to upload data to the European Nucleotide Archive
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  Home-page: https://github.com/usegalaxy-eu/ena-upload-cli
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  Author: Dilmurat Yusuf
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  Requires-Dist: pandas<=3.0.0,>=2.0.3
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  Requires-Dist: requests<=3.0.0,>=2.31.0
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  Requires-Dist: openpyxl<=4.0.0,>=3.1.2
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{ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/ena_upload_cli.egg-info/requires.txt RENAMED
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ena_upload_cli-0.7.4/requirements.txt ADDED
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+ genshi==0.7.*
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+ lxml>=4.9.3, <= 5.0.0
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+ pandas>=2.0.3 , <= 3.0.0
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+ # pyyaml set to v5.3.* to prevent problems with setuptools upon installation, as described here: https://github.com/yaml/pyyaml/issues/723#issuecomment-1638560401
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+ pyyaml==5.3.*
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+ requests>=2.31.0 , <= 3.0.0
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+ openpyxl>=3.1.2 , <= 4.0.0
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+ jsonschema>=4.19.1
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+ pytest==7.4.*
ena_upload_cli-0.7.2/ena_upload/_version.py DELETED
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- __version__ = "0.7.2"
ena_upload_cli-0.7.2/requirements.txt DELETED
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- genshi==0.7.*
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- lxml>=4.9.3, <= 5.0.0
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- pandas>=2.0.3 , <= 3.0.0
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- pyyaml==5.*
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- requests>=2.31.0 , <= 3.0.0
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- openpyxl>=3.1.2 , <= 4.0.0
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- jsonschema>=4.19.1
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- pytest==7.4.*
{ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/LICENSE RENAMED
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{ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/README.md RENAMED
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{ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/setup.cfg RENAMED
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{ena_upload_cli-0.7.2 → ena_upload_cli-0.7.4}/setup.py RENAMED
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