en-mof-chem-ner 0.0.1__tar.gz

en_mof_chem_ner-0.0.1/LICENSE

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+MIT License
+
+Copyright (c) 2026 Dinga Wonanke
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

en_mof_chem_ner-0.0.1/MANIFEST.in

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+include meta.json
+include LICENSE
+include LICENSES_SOURCES
+include README.md

en_mof_chem_ner-0.0.1/PKG-INFO

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+Metadata-Version: 2.4
+Name: en_mof_chem_ner
+Version: 0.0.1
+Summary: A Spacy name entity recogniser to extract mof reagents from text
+Home-page: https://github.com/bafgreat/mofsyncondition.git
+Author: Dinga Wonanke
+Author-email: dak52@uclive.ac.nz
+License: MIT
+License-File: LICENSE
+Requires-Dist: spacy<3.8.0,>=3.7.5
+Dynamic: author
+Dynamic: author-email
+Dynamic: description
+Dynamic: home-page
+Dynamic: license
+Dynamic: license-file
+Dynamic: requires-dist
+Dynamic: summary
+
+A Spacy name entity recogniser to extract mof reagents from text
+
+| Feature | Description |
+| --- | --- |
+| **Name** | `en_mof_chem_ner` |
+| **Version** | `0.0.1` |
+| **spaCy** | `>=3.7.5,<3.8.0` |
+| **Default Pipeline** | `tok2vec`, `ner` |
+| **Components** | `tok2vec`, `ner` |
+| **Vectors** | 0 keys, 0 unique vectors (0 dimensions) |
+| **Sources** | n/a |
+| **License** | `MIT` |
+| **Author** | [Dinga Wonanke](https://github.com/bafgreat/mofsyncondition.git) |
+
+### Label Scheme
+
+<details>
+
+<summary>View label scheme (7 labels for 1 components)</summary>
+
+| Component | Labels |
+| --- | --- |
+| **`ner`** | `ATMOSPHERE`, `METAL_SALT`, `MODULATOR`, `MOF`, `ORGANIC_LIGAND`, `SOLVENT`, `SYNTH_METHOD` |
+
+</details>
+
+### Accuracy
+
+| Type | Score |
+| --- | --- |
+| `ENTS_F` | 91.66 |
+| `ENTS_P` | 92.78 |
+| `ENTS_R` | 90.56 |
+| `TOK2VEC_LOSS` | 26365.16 |
+| `NER_LOSS` | 78555.25 |

en_mof_chem_ner-0.0.1/README.md

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+A Spacy name entity recogniser to extract mof reagents from text
+
+| Feature | Description |
+| --- | --- |
+| **Name** | `en_mof_chem_ner` |
+| **Version** | `0.0.1` |
+| **spaCy** | `>=3.7.5,<3.8.0` |
+| **Default Pipeline** | `tok2vec`, `ner` |
+| **Components** | `tok2vec`, `ner` |
+| **Vectors** | 0 keys, 0 unique vectors (0 dimensions) |
+| **Sources** | n/a |
+| **License** | `MIT` |
+| **Author** | [Dinga Wonanke](https://github.com/bafgreat/mofsyncondition.git) |
+
+### Label Scheme
+
+<details>
+
+<summary>View label scheme (7 labels for 1 components)</summary>
+
+| Component | Labels |
+| --- | --- |
+| **`ner`** | `ATMOSPHERE`, `METAL_SALT`, `MODULATOR`, `MOF`, `ORGANIC_LIGAND`, `SOLVENT`, `SYNTH_METHOD` |
+
+</details>
+
+### Accuracy
+
+| Type | Score |
+| --- | --- |
+| `ENTS_F` | 91.66 |
+| `ENTS_P` | 92.78 |
+| `ENTS_R` | 90.56 |
+| `TOK2VEC_LOSS` | 26365.16 |
+| `NER_LOSS` | 78555.25 |

en_mof_chem_ner-0.0.1/en_mof_chem_ner/__init__.py

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+from pathlib import Path
+from spacy.util import load_model_from_init_py, get_model_meta
+
+
+
+__version__ = get_model_meta(Path(__file__).parent)['version']
+
+
+def load(**overrides):
+    return load_model_from_init_py(__file__, **overrides)

en_mof_chem_ner-0.0.1/en_mof_chem_ner/en_mof_chem_ner-0.0.1/LICENSE

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+MIT License
+
+Copyright (c) 2026 Dinga Wonanke
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

en_mof_chem_ner-0.0.1/en_mof_chem_ner/en_mof_chem_ner-0.0.1/README.md

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+A Spacy name entity recogniser to extract mof reagents from text
+
+| Feature | Description |
+| --- | --- |
+| **Name** | `en_mof_chem_ner` |
+| **Version** | `0.0.1` |
+| **spaCy** | `>=3.7.5,<3.8.0` |
+| **Default Pipeline** | `tok2vec`, `ner` |
+| **Components** | `tok2vec`, `ner` |
+| **Vectors** | 0 keys, 0 unique vectors (0 dimensions) |
+| **Sources** | n/a |
+| **License** | `MIT` |
+| **Author** | [Dinga Wonanke](https://github.com/bafgreat/mofsyncondition.git) |
+
+### Label Scheme
+
+<details>
+
+<summary>View label scheme (7 labels for 1 components)</summary>
+
+| Component | Labels |
+| --- | --- |
+| **`ner`** | `ATMOSPHERE`, `METAL_SALT`, `MODULATOR`, `MOF`, `ORGANIC_LIGAND`, `SOLVENT`, `SYNTH_METHOD` |
+
+</details>
+
+### Accuracy
+
+| Type | Score |
+| --- | --- |
+| `ENTS_F` | 91.66 |
+| `ENTS_P` | 92.78 |
+| `ENTS_R` | 90.56 |
+| `TOK2VEC_LOSS` | 26365.16 |
+| `NER_LOSS` | 78555.25 |

en_mof_chem_ner-0.0.1/en_mof_chem_ner/en_mof_chem_ner-0.0.1/config.cfg

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+[paths]
+train = "../../data/trainin_data/chem_train.spacy"
+dev = "../../data/trainin_data/chem_dev.spacy"
+vectors = null
+init_tok2vec = null
+
+[system]
+gpu_allocator = null
+seed = 0
+
+[nlp]
+lang = "en"
+pipeline = ["tok2vec","ner"]
+batch_size = 1000
+disabled = []
+before_creation = null
+after_creation = null
+after_pipeline_creation = null
+tokenizer = {"@tokenizers":"spacy.Tokenizer.v1"}
+vectors = {"@vectors":"spacy.Vectors.v1"}
+
+[components]
+
+[components.ner]
+factory = "ner"
+incorrect_spans_key = null
+moves = null
+scorer = {"@scorers":"spacy.ner_scorer.v1"}
+update_with_oracle_cut_size = 100
+
+[components.ner.model]
+@architectures = "spacy.TransitionBasedParser.v2"
+state_type = "ner"
+extra_state_tokens = false
+hidden_width = 64
+maxout_pieces = 2
+use_upper = true
+nO = null
+
+[components.ner.model.tok2vec]
+@architectures = "spacy.Tok2VecListener.v1"
+width = ${components.tok2vec.model.encode.width}
+upstream = "*"
+
+[components.tok2vec]
+factory = "tok2vec"
+
+[components.tok2vec.model]
+@architectures = "spacy.Tok2Vec.v2"
+
+[components.tok2vec.model.embed]
+@architectures = "spacy.MultiHashEmbed.v2"
+width = ${components.tok2vec.model.encode.width}
+attrs = ["NORM","PREFIX","SUFFIX","SHAPE"]
+rows = [5000,1000,2500,2500]
+include_static_vectors = false
+
+[components.tok2vec.model.encode]
+@architectures = "spacy.MaxoutWindowEncoder.v2"
+width = 96
+depth = 4
+window_size = 1
+maxout_pieces = 3
+
+[corpora]
+
+[corpora.dev]
+@readers = "spacy.Corpus.v1"
+path = ${paths.dev}
+max_length = 0
+gold_preproc = false
+limit = 0
+augmenter = null
+
+[corpora.train]
+@readers = "spacy.Corpus.v1"
+path = ${paths.train}
+max_length = 0
+gold_preproc = false
+limit = 0
+augmenter = null
+
+[training]
+dev_corpus = "corpora.dev"
+train_corpus = "corpora.train"
+seed = ${system.seed}
+gpu_allocator = ${system.gpu_allocator}
+dropout = 0.1
+accumulate_gradient = 1
+patience = 1600
+max_epochs = 0
+max_steps = 10000000
+eval_frequency = 200
+frozen_components = []
+annotating_components = []
+before_to_disk = null
+before_update = null
+
+[training.batcher]
+@batchers = "spacy.batch_by_words.v1"
+discard_oversize = false
+tolerance = 0.2
+get_length = null
+
+[training.batcher.size]
+@schedules = "compounding.v1"
+start = 100
+stop = 1000
+compound = 1.001
+t = 0.0
+
+[training.logger]
+@loggers = "spacy.ConsoleLogger.v1"
+progress_bar = false
+
+[training.optimizer]
+@optimizers = "Adam.v1"
+beta1 = 0.9
+beta2 = 0.999
+L2_is_weight_decay = true
+L2 = 0.01
+grad_clip = 1.0
+use_averages = false
+eps = 0.00000001
+learn_rate = 0.0001
+
+[training.score_weights]
+ents_f = 1.0
+ents_p = 0.0
+ents_r = 0.0
+ents_per_type = null
+
+[pretraining]
+
+[initialize]
+vectors = ${paths.vectors}
+init_tok2vec = ${paths.init_tok2vec}
+vocab_data = null
+lookups = null
+before_init = null
+after_init = null
+
+[initialize.components]
+
+[initialize.tokenizer]

en_mof_chem_ner-0.0.1/en_mof_chem_ner/en_mof_chem_ner-0.0.1/meta.json

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+{
+  "lang":"en",
+  "name":"mof_chem_ner",
+  "version":"0.0.1",
+  "description":"A Spacy name entity recogniser to extract mof reagents from text",
+  "author":"Dinga Wonanke",
+  "email":"dak52@uclive.ac.nz",
+  "url":"https://github.com/bafgreat/mofsyncondition.git",
+  "license":"MIT",
+  "spacy_version":">=3.7.5,<3.8.0",
+  "spacy_git_version":"a6d0fc360",
+  "vectors":{
+    "width":0,
+    "vectors":0,
+    "keys":0,
+    "name":null
+  },
+  "labels":{
+    "tok2vec":[
+
+    ],
+    "ner":[
+      "ATMOSPHERE",
+      "METAL_SALT",
+      "MODULATOR",
+      "MOF",
+      "ORGANIC_LIGAND",
+      "SOLVENT",
+      "SYNTH_METHOD"
+    ]
+  },
+  "pipeline":[
+    "tok2vec",
+    "ner"
+  ],
+  "components":[
+    "tok2vec",
+    "ner"
+  ],
+  "disabled":[
+
+  ],
+  "performance":{
+    "ents_f":0.9165606814,
+    "ents_p":0.9277522041,
+    "ents_r":0.9056359482,
+    "ents_per_type":{
+      "METAL_SALT":{
+        "p":0.9291938998,
+        "r":0.9081714134,
+        "f":0.9185623906
+      },
+      "ORGANIC_LIGAND":{
+        "p":0.7599510104,
+        "r":0.7156862745,
+        "f":0.7371547372
+      },
+      "SOLVENT":{
+        "p":0.9814999005,
+        "r":0.9899678973,
+        "f":0.9857157127
+      },
+      "MODULATOR":{
+        "p":0.9721886336,
+        "r":0.9560047562,
+        "f":0.964028777
+      },
+      "ATMOSPHERE":{
+        "p":0.9715224535,
+        "r":0.9662309368,
+        "f":0.9688694702
+      },
+      "SYNTH_METHOD":{
+        "p":0.9970238095,
+        "r":0.9940652819,
+        "f":0.9955423477
+      },
+      "MOF":{
+        "p":0.6797066015,
+        "r":0.4973166369,
+        "f":0.5743801653
+      }
+    },
+    "tok2vec_loss":263.6515560191,
+    "ner_loss":785.552518154
+  },
+  "requirements":[
+
+  ]
+}

en_mof_chem_ner-0.0.1/en_mof_chem_ner/en_mof_chem_ner-0.0.1/ner/cfg

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+{
+  "moves":null,
+  "update_with_oracle_cut_size":100,
+  "multitasks":[
+
+  ],
+  "min_action_freq":1,
+  "learn_tokens":false,
+  "beam_width":1,
+  "beam_density":0.0,
+  "beam_update_prob":0.0,
+  "incorrect_spans_key":null
+}

en_mof_chem_ner-0.0.1/en_mof_chem_ner/en_mof_chem_ner-0.0.1/ner/moves

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+��moves� {"0":{},"1":{"SOLVENT":30481,"METAL_SALT":29278,"ORGANIC_LIGAND":22060,"ATMOSPHERE":9849,"MOF":6516,"MODULATOR":5561,"SYNTH_METHOD":2794},"2":{"SOLVENT":30481,"METAL_SALT":29278,"ORGANIC_LIGAND":22060,"ATMOSPHERE":9849,"MOF":6516,"MODULATOR":5561,"SYNTH_METHOD":2794},"3":{"SOLVENT":30481,"METAL_SALT":29278,"ORGANIC_LIGAND":22060,"ATMOSPHERE":9849,"MOF":6516,"MODULATOR":5561,"SYNTH_METHOD":2794},"4":{"SOLVENT":30481,"METAL_SALT":29278,"ORGANIC_LIGAND":22060,"ATMOSPHERE":9849,"MOF":6516,"MODULATOR":5561,"SYNTH_METHOD":2794,"":1},"5":{"":1}}�cfg��neg_key�

en_mof_chem_ner-0.0.1/en_mof_chem_ner/en_mof_chem_ner-0.0.1/tok2vec/cfg

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+{
+
+}