empix 0.0.1__tar.gz → 0.0.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (36) hide show
  1. {empix-0.0.1 → empix-0.0.2}/PKG-INFO +3 -3
  2. {empix-0.0.1 → empix-0.0.2}/README.md +1 -1
  3. {empix-0.0.1 → empix-0.0.2}/docs/build_docs.py +1 -1
  4. {empix-0.0.1 → empix-0.0.2}/docs/conf.py +1 -1
  5. {empix-0.0.1 → empix-0.0.2}/empix/__init__.py +97 -133
  6. {empix-0.0.1 → empix-0.0.2}/empix/version.py +2 -2
  7. {empix-0.0.1 → empix-0.0.2}/empix.egg-info/PKG-INFO +3 -3
  8. {empix-0.0.1 → empix-0.0.2}/.coveragerc +0 -0
  9. {empix-0.0.1 → empix-0.0.2}/.github/workflows/measure_code_coverage.yml +0 -0
  10. {empix-0.0.1 → empix-0.0.2}/.github/workflows/publish_documentation_website.yml +0 -0
  11. {empix-0.0.1 → empix-0.0.2}/.github/workflows/publish_release_to_pypi.yml +0 -0
  12. {empix-0.0.1 → empix-0.0.2}/.github/workflows/test_library.yml +0 -0
  13. {empix-0.0.1 → empix-0.0.2}/.gitignore +0 -0
  14. {empix-0.0.1 → empix-0.0.2}/LICENSE +0 -0
  15. {empix-0.0.1 → empix-0.0.2}/docs/INSTALL.rst +0 -0
  16. {empix-0.0.1 → empix-0.0.2}/docs/Makefile +0 -0
  17. {empix-0.0.1 → empix-0.0.2}/docs/_static/readthedocs_custom.css +0 -0
  18. {empix-0.0.1 → empix-0.0.2}/docs/_templates/custom_class_template.rst +0 -0
  19. {empix-0.0.1 → empix-0.0.2}/docs/_templates/custom_module_template.rst +0 -0
  20. {empix-0.0.1 → empix-0.0.2}/docs/_templates/versions.html +0 -0
  21. {empix-0.0.1 → empix-0.0.2}/docs/api.rst +0 -0
  22. {empix-0.0.1 → empix-0.0.2}/docs/examples.rst +0 -0
  23. {empix-0.0.1 → empix-0.0.2}/docs/index.rst +0 -0
  24. {empix-0.0.1 → empix-0.0.2}/docs/license.rst +0 -0
  25. {empix-0.0.1 → empix-0.0.2}/docs/make.bat +0 -0
  26. {empix-0.0.1 → empix-0.0.2}/docs/private_members_to_publish_to_docs.rst +0 -0
  27. {empix-0.0.1 → empix-0.0.2}/empix.egg-info/SOURCES.txt +0 -0
  28. {empix-0.0.1 → empix-0.0.2}/empix.egg-info/dependency_links.txt +0 -0
  29. {empix-0.0.1 → empix-0.0.2}/empix.egg-info/requires.txt +0 -0
  30. {empix-0.0.1 → empix-0.0.2}/empix.egg-info/top_level.txt +0 -0
  31. {empix-0.0.1 → empix-0.0.2}/examples/basic_usage.ipynb +0 -0
  32. {empix-0.0.1 → empix-0.0.2}/pyproject.toml +0 -0
  33. {empix-0.0.1 → empix-0.0.2}/setup.cfg +0 -0
  34. {empix-0.0.1 → empix-0.0.2}/setup.py +0 -0
  35. {empix-0.0.1 → empix-0.0.2}/tests/test_root.py +0 -0
  36. {empix-0.0.1 → empix-0.0.2}/tox.ini +0 -0
@@ -1,6 +1,6 @@
1
- Metadata-Version: 2.1
1
+ Metadata-Version: 2.2
2
2
  Name: empix
3
- Version: 0.0.1
3
+ Version: 0.0.2
4
4
  Summary: Contains tools for analyzing electron microscopy data that are not available in ``hyperspy``.
5
5
  Author-email: Matthew Fitzpatrick <matthew.rc.fitzpatrick@gmail.com>
6
6
  Project-URL: Homepage, https://mrfitzpa.github.io/empix
@@ -52,7 +52,7 @@ Requires-Dist: empix[docs,examples,tests]; extra == "all"
52
52
  microscopy data that are not available in
53
53
  [`hyperspy`](https://hyperspy.org/hyperspy-doc/current/index.html).
54
54
 
55
- Visit the `empix` [website](https://mrfitzpa.gitlab.io/empix) for a web version
55
+ Visit the `empix` [website](https://mrfitzpa.github.io/empix) for a web version
56
56
  of the installation instructions, the reference guide, and the examples archive.
57
57
 
58
58
  <!--
@@ -11,7 +11,7 @@
11
11
  microscopy data that are not available in
12
12
  [`hyperspy`](https://hyperspy.org/hyperspy-doc/current/index.html).
13
13
 
14
- Visit the `empix` [website](https://mrfitzpa.gitlab.io/empix) for a web version
14
+ Visit the `empix` [website](https://mrfitzpa.github.io/empix) for a web version
15
15
  of the installation instructions, the reference guide, and the examples archive.
16
16
 
17
17
  <!--
@@ -100,7 +100,7 @@ cmd_output_as_bytes = subprocess.check_output("git tag", shell=True)
100
100
  cmd_output = cmd_output_as_bytes.decode("utf-8")
101
101
  tags = cmd_output.rstrip("\n").split("\n")
102
102
 
103
- pattern = r"v[0-9]+\.[0.9]+\.[0-9]+"
103
+ pattern = r"v[0-9]+\.[0-9]+\.[0-9]+"
104
104
  release_tags = tuple(tag for tag in tags if re.fullmatch(pattern, tag))
105
105
 
106
106
  for tag in release_tags:
@@ -181,7 +181,7 @@ if build_all_docs is not None:
181
181
  cmd_output = cmd_output_as_bytes.decode("utf-8")
182
182
  tags = cmd_output.rstrip("\n").split("\n")
183
183
 
184
- pattern = r"v[0-9]+\.[0.9]+\.[0-9]+"
184
+ pattern = r"v[0-9]+\.[0-9]+\.[0-9]+"
185
185
  release_tags = tuple(tag for tag in tags if re.fullmatch(pattern, tag))
186
186
 
187
187
  if (current_version != "latest"):
@@ -23,12 +23,6 @@ microscopy data that are not available in `hyperspy
23
23
  ## Load libraries/packages/modules ##
24
24
  #####################################
25
25
 
26
- # For accessing attributes of functions.
27
- import inspect
28
-
29
- # For randomly selecting items in dictionaries.
30
- import random
31
-
32
26
  # For performing deep copies.
33
27
  import copy
34
28
 
@@ -62,7 +56,7 @@ import skimage.measure
62
56
 
63
57
 
64
58
  # Get version of current package.
65
- from fancytypes.version import __version__
59
+ from empix.version import __version__
66
60
 
67
61
 
68
62
 
@@ -92,9 +86,7 @@ __all__ = ["abs_sq",
92
86
 
93
87
 
94
88
  def _check_and_convert_action_to_apply_to_input_signal(params):
95
- current_func_name = inspect.stack()[0][3]
96
- char_idx = 19
97
- obj_name = current_func_name[char_idx:]
89
+ obj_name = "action_to_apply_to_input_signal"
98
90
  action_to_apply_to_input_signal = params[obj_name]
99
91
 
100
92
  return action_to_apply_to_input_signal
@@ -102,9 +94,7 @@ def _check_and_convert_action_to_apply_to_input_signal(params):
102
94
 
103
95
 
104
96
  def _check_and_convert_input_signal(params):
105
- current_func_name = inspect.stack()[0][3]
106
- char_idx = 19
107
- obj_name = current_func_name[char_idx:]
97
+ obj_name = "input_signal"
108
98
  input_signal = params[obj_name]
109
99
 
110
100
  action_to_apply_to_input_signal = params["action_to_apply_to_input_signal"]
@@ -131,9 +121,7 @@ def _check_and_convert_input_signal(params):
131
121
 
132
122
 
133
123
  def _check_and_convert_title(params):
134
- current_func_name = inspect.stack()[0][3]
135
- char_idx = 19
136
- obj_name = current_func_name[char_idx:]
124
+ obj_name = "title"
137
125
  obj = params[obj_name]
138
126
 
139
127
  accepted_types = (str, type(None))
@@ -184,7 +172,7 @@ def _generate_title(input_signal, action_to_apply_to_input_signal):
184
172
 
185
173
 
186
174
  def _pre_serialize_title(title):
187
- obj_to_pre_serialize = random.choice(list(locals().values()))
175
+ obj_to_pre_serialize = title
188
176
  serializable_rep = obj_to_pre_serialize
189
177
 
190
178
  return serializable_rep
@@ -227,17 +215,16 @@ def abs_sq(input_signal, title=_default_title):
227
215
 
228
216
  """
229
217
  params = locals()
230
- params["action_to_apply_to_input_signal"] = inspect.stack()[0][3]
218
+ params["action_to_apply_to_input_signal"] = "abs_sq"
219
+ global_symbol_table = globals()
231
220
  for param_name in params:
232
221
  func_name = "_check_and_convert_" + param_name
233
- func_alias = globals()[func_name]
222
+ func_alias = global_symbol_table[func_name]
234
223
  params[param_name] = func_alias(params)
235
224
 
236
- func_name = "_" + inspect.stack()[0][3]
237
- func_alias = globals()[func_name]
238
225
  kwargs = params
239
226
  del kwargs["action_to_apply_to_input_signal"]
240
- output_signal = func_alias(**kwargs)
227
+ output_signal = _abs_sq(**kwargs)
241
228
 
242
229
  return output_signal
243
230
 
@@ -257,9 +244,7 @@ def _abs_sq(input_signal, title):
257
244
 
258
245
 
259
246
  def _check_and_convert_center(params):
260
- current_func_name = inspect.stack()[0][3]
261
- char_idx = 19
262
- obj_name = current_func_name[char_idx:]
247
+ obj_name = "center"
263
248
  obj = params[obj_name]
264
249
 
265
250
  param_name = "action_to_apply_to_input_signal"
@@ -267,6 +252,8 @@ def _check_and_convert_center(params):
267
252
 
268
253
  param_name = "input_signal"
269
254
  input_signal = params.get(param_name, None)
255
+
256
+ current_func_name = "_check_and_convert_center"
270
257
 
271
258
  if obj is not None:
272
259
  try:
@@ -331,7 +318,7 @@ def _calc_h_and_v_ranges(signal):
331
318
 
332
319
 
333
320
  def _pre_serialize_center(center):
334
- obj_to_pre_serialize = random.choice(list(locals().values()))
321
+ obj_to_pre_serialize = center
335
322
  serializable_rep = obj_to_pre_serialize
336
323
 
337
324
  return serializable_rep
@@ -346,13 +333,13 @@ def _de_pre_serialize_center(serializable_rep):
346
333
 
347
334
 
348
335
  def _check_and_convert_radial_range(params):
349
- current_func_name = inspect.stack()[0][3]
350
- char_idx = 19
351
- obj_name = current_func_name[char_idx:]
336
+ obj_name = "radial_range"
352
337
  obj = params[obj_name]
353
338
 
354
339
  param_name = "input_signal"
355
340
  input_signal = params.get(param_name, None)
341
+
342
+ current_func_name = "_check_and_convert_radial_range"
356
343
 
357
344
  if obj is not None:
358
345
  try:
@@ -381,7 +368,7 @@ def _check_and_convert_radial_range(params):
381
368
 
382
369
 
383
370
  def _pre_serialize_radial_range(radial_range):
384
- obj_to_pre_serialize = random.choice(list(locals().values()))
371
+ obj_to_pre_serialize = radial_range
385
372
  serializable_rep = obj_to_pre_serialize
386
373
 
387
374
  return serializable_rep
@@ -396,13 +383,13 @@ def _de_pre_serialize_radial_range(serializable_rep):
396
383
 
397
384
 
398
385
  def _check_and_convert_num_bins(params):
399
- current_func_name = inspect.stack()[0][3]
400
- char_idx = 19
401
- obj_name = current_func_name[char_idx:]
386
+ obj_name = "num_bins"
402
387
  obj = params[obj_name]
403
388
 
404
389
  param_name = "input_signal"
405
390
  input_signal = params.get(param_name, None)
391
+
392
+ current_func_name = "_check_and_convert_num_bins"
406
393
 
407
394
  if obj is not None:
408
395
  try:
@@ -433,7 +420,7 @@ def _signal_is_1d(signal):
433
420
 
434
421
 
435
422
  def _pre_serialize_num_bins(num_bins):
436
- obj_to_pre_serialize = random.choice(list(locals().values()))
423
+ obj_to_pre_serialize = num_bins
437
424
  serializable_rep = obj_to_pre_serialize
438
425
 
439
426
  return serializable_rep
@@ -614,9 +601,7 @@ class OptionalAzimuthalAveragingParams(_cls_alias):
614
601
 
615
602
 
616
603
  def _check_and_convert_optional_params(params):
617
- current_func_name = inspect.stack()[0][3]
618
- char_idx = 19
619
- obj_name = current_func_name[char_idx:]
604
+ obj_name = "optional_params"
620
605
  obj = params[obj_name]
621
606
 
622
607
  param_name = "action_to_apply_to_input_signal"
@@ -647,10 +632,11 @@ def _check_and_convert_optional_params(params):
647
632
  {"input_signal": _check_and_convert_input_signal(params),
648
633
  "action_to_apply_to_input_signal": action_to_apply_to_input_signal,
649
634
  **optional_params_core_attrs}
650
-
635
+
636
+ global_symbol_table = globals()
651
637
  for param_name in optional_params_core_attrs:
652
638
  func_name = "_check_and_convert_" + param_name
653
- func_alias = globals()[func_name]
639
+ func_alias = global_symbol_table[func_name]
654
640
  optional_params_core_attrs[param_name] = func_alias(params)
655
641
 
656
642
  kwargs = {"skip_validation_and_conversion": True,
@@ -711,17 +697,16 @@ def azimuthally_average(input_signal, optional_params=_default_optional_params):
711
697
 
712
698
  """
713
699
  params = locals()
714
- params["action_to_apply_to_input_signal"] = inspect.stack()[0][3]
700
+ params["action_to_apply_to_input_signal"] = "azimuthally_average"
701
+ global_symbol_table = globals()
715
702
  for param_name in params:
716
703
  func_name = "_check_and_convert_" + param_name
717
- func_alias = globals()[func_name]
704
+ func_alias = global_symbol_table[func_name]
718
705
  params[param_name] = func_alias(params)
719
706
 
720
- func_name = "_" + inspect.stack()[0][3]
721
- func_alias = globals()[func_name]
722
707
  kwargs = params
723
708
  del kwargs["action_to_apply_to_input_signal"]
724
- output_signal = func_alias(**kwargs)
709
+ output_signal = _azimuthally_average(**kwargs)
725
710
 
726
711
  return output_signal
727
712
 
@@ -1305,17 +1290,16 @@ def azimuthally_integrate(input_signal,
1305
1290
 
1306
1291
  """
1307
1292
  params = locals()
1308
- params["action_to_apply_to_input_signal"] = inspect.stack()[0][3]
1293
+ params["action_to_apply_to_input_signal"] = "azimuthally_integrate"
1294
+ global_symbol_table = globals()
1309
1295
  for param_name in params:
1310
1296
  func_name = "_check_and_convert_" + param_name
1311
- func_alias = globals()[func_name]
1297
+ func_alias = global_symbol_table[func_name]
1312
1298
  params[param_name] = func_alias(params)
1313
1299
 
1314
- func_name = "_" + inspect.stack()[0][3]
1315
- func_alias = globals()[func_name]
1316
1300
  kwargs = params
1317
1301
  del kwargs["action_to_apply_to_input_signal"]
1318
- output_signal = func_alias(**kwargs)
1302
+ output_signal = _azimuthally_integrate(**kwargs)
1319
1303
 
1320
1304
  return output_signal
1321
1305
 
@@ -1548,17 +1532,16 @@ def annularly_average(input_signal, optional_params=_default_optional_params):
1548
1532
 
1549
1533
  """
1550
1534
  params = locals()
1551
- params["action_to_apply_to_input_signal"] = inspect.stack()[0][3]
1535
+ params["action_to_apply_to_input_signal"] = "annularly_average"
1536
+ global_symbol_table = globals()
1552
1537
  for param_name in params:
1553
1538
  func_name = "_check_and_convert_" + param_name
1554
- func_alias = globals()[func_name]
1539
+ func_alias = global_symbol_table[func_name]
1555
1540
  params[param_name] = func_alias(params)
1556
1541
 
1557
- func_name = "_" + inspect.stack()[0][3]
1558
- func_alias = globals()[func_name]
1559
1542
  kwargs = params
1560
1543
  del kwargs["action_to_apply_to_input_signal"]
1561
- output_signal = func_alias(**kwargs)
1544
+ output_signal = _annularly_average(**kwargs)
1562
1545
 
1563
1546
  return output_signal
1564
1547
 
@@ -1783,17 +1766,16 @@ def annularly_integrate(input_signal, optional_params=_default_optional_params):
1783
1766
 
1784
1767
  """
1785
1768
  params = locals()
1786
- params["action_to_apply_to_input_signal"] = inspect.stack()[0][3]
1769
+ params["action_to_apply_to_input_signal"] = "annularly_integrate"
1770
+ global_symbol_table = globals()
1787
1771
  for param_name in params:
1788
1772
  func_name = "_check_and_convert_" + param_name
1789
- func_alias = globals()[func_name]
1773
+ func_alias = global_symbol_table[func_name]
1790
1774
  params[param_name] = func_alias(params)
1791
1775
 
1792
- func_name = "_" + inspect.stack()[0][3]
1793
- func_alias = globals()[func_name]
1794
1776
  kwargs = params
1795
1777
  del kwargs["action_to_apply_to_input_signal"]
1796
- output_signal = func_alias(**kwargs)
1778
+ output_signal = _annularly_integrate(**kwargs)
1797
1779
 
1798
1780
  return output_signal
1799
1781
 
@@ -1819,14 +1801,14 @@ def _annularly_integrate(input_signal, optional_params):
1819
1801
 
1820
1802
 
1821
1803
  def _check_and_convert_limits(params):
1822
- current_func_name = inspect.stack()[0][3]
1823
- char_idx = 19
1824
- obj_name = current_func_name[char_idx:]
1804
+ obj_name = "limits"
1825
1805
  obj = params[obj_name]
1826
1806
 
1827
1807
  param_name = "input_signal"
1828
1808
  input_signal = params.get(param_name, None)
1829
1809
 
1810
+ current_func_name = "_check_and_convert_limits"
1811
+
1830
1812
  if obj is not None:
1831
1813
  try:
1832
1814
  kwargs = {"obj": obj, "obj_name": obj_name}
@@ -1862,7 +1844,7 @@ def _calc_u_coords_1d(signal):
1862
1844
 
1863
1845
 
1864
1846
  def _pre_serialize_limits(limits):
1865
- obj_to_pre_serialize = random.choice(list(locals().values()))
1847
+ obj_to_pre_serialize = limits
1866
1848
  serializable_rep = obj_to_pre_serialize
1867
1849
 
1868
1850
  return serializable_rep
@@ -1877,9 +1859,7 @@ def _de_pre_serialize_limits(serializable_rep):
1877
1859
 
1878
1860
 
1879
1861
  def _check_and_convert_normalize(params):
1880
- current_func_name = inspect.stack()[0][3]
1881
- char_idx = 19
1882
- obj_name = current_func_name[char_idx:]
1862
+ obj_name = "normalize"
1883
1863
  kwargs = {"obj": params[obj_name], "obj_name": obj_name}
1884
1864
  normalize = czekitout.convert.to_bool(**kwargs)
1885
1865
 
@@ -1888,7 +1868,7 @@ def _check_and_convert_normalize(params):
1888
1868
 
1889
1869
 
1890
1870
  def _pre_serialize_normalize(normalize):
1891
- obj_to_pre_serialize = random.choice(list(locals().values()))
1871
+ obj_to_pre_serialize = normalize
1892
1872
  serializable_rep = obj_to_pre_serialize
1893
1873
 
1894
1874
  return serializable_rep
@@ -2137,17 +2117,16 @@ def cumulatively_integrate_1d(input_signal,
2137
2117
 
2138
2118
  """
2139
2119
  params = locals()
2140
- params["action_to_apply_to_input_signal"] = inspect.stack()[0][3]
2120
+ params["action_to_apply_to_input_signal"] = "cumulatively_integrate_1d"
2121
+ global_symbol_table = globals()
2141
2122
  for param_name in params:
2142
2123
  func_name = "_check_and_convert_" + param_name
2143
- func_alias = globals()[func_name]
2124
+ func_alias = global_symbol_table[func_name]
2144
2125
  params[param_name] = func_alias(params)
2145
2126
 
2146
- func_name = "_" + inspect.stack()[0][3]
2147
- func_alias = globals()[func_name]
2148
2127
  kwargs = params
2149
2128
  del kwargs["action_to_apply_to_input_signal"]
2150
- output_signal = func_alias(**kwargs)
2129
+ output_signal = _cumulatively_integrate_1d(**kwargs)
2151
2130
 
2152
2131
  return output_signal
2153
2132
 
@@ -2264,14 +2243,14 @@ def _cumulatively_integrate_input_signal_datasubset(input_signal_datasubset,
2264
2243
 
2265
2244
 
2266
2245
  def _check_and_convert_window_dims(params):
2267
- current_func_name = inspect.stack()[0][3]
2268
- char_idx = 19
2269
- obj_name = current_func_name[char_idx:]
2246
+ obj_name = "window_dims"
2270
2247
  obj = params[obj_name]
2271
2248
 
2272
2249
  param_name = "input_signal"
2273
2250
  input_signal = params.get(param_name, None)
2274
2251
 
2252
+ current_func_name = "_check_and_convert_window_dims"
2253
+
2275
2254
  if obj is not None:
2276
2255
  try:
2277
2256
  kwargs = {"obj": obj, "obj_name": obj_name}
@@ -2291,7 +2270,7 @@ def _check_and_convert_window_dims(params):
2291
2270
 
2292
2271
 
2293
2272
  def _pre_serialize_window_dims(window_dims):
2294
- obj_to_pre_serialize = random.choice(list(locals().values()))
2273
+ obj_to_pre_serialize = window_dims
2295
2274
  serializable_rep = obj_to_pre_serialize
2296
2275
 
2297
2276
  return serializable_rep
@@ -2306,9 +2285,7 @@ def _de_pre_serialize_window_dims(serializable_rep):
2306
2285
 
2307
2286
 
2308
2287
  def _check_and_convert_pad_mode(params):
2309
- current_func_name = inspect.stack()[0][3]
2310
- char_idx = 19
2311
- obj_name = current_func_name[char_idx:]
2288
+ obj_name = "pad_mode"
2312
2289
  obj = params[obj_name]
2313
2290
 
2314
2291
  kwargs = {"obj": obj, "obj_name": obj_name}
@@ -2322,7 +2299,7 @@ def _check_and_convert_pad_mode(params):
2322
2299
 
2323
2300
 
2324
2301
  def _pre_serialize_pad_mode(pad_mode):
2325
- obj_to_pre_serialize = random.choice(list(locals().values()))
2302
+ obj_to_pre_serialize = pad_mode
2326
2303
  serializable_rep = obj_to_pre_serialize
2327
2304
 
2328
2305
  return serializable_rep
@@ -2337,9 +2314,7 @@ def _de_pre_serialize_pad_mode(serializable_rep):
2337
2314
 
2338
2315
 
2339
2316
  def _check_and_convert_apply_symmetric_mask(params):
2340
- current_func_name = inspect.stack()[0][3]
2341
- char_idx = 19
2342
- obj_name = current_func_name[char_idx:]
2317
+ obj_name = "apply_symmetric_mask"
2343
2318
  kwargs = {"obj": params[obj_name], "obj_name": obj_name}
2344
2319
  apply_symmetric_mask = czekitout.convert.to_bool(**kwargs)
2345
2320
 
@@ -2348,7 +2323,7 @@ def _check_and_convert_apply_symmetric_mask(params):
2348
2323
 
2349
2324
 
2350
2325
  def _pre_serialize_apply_symmetric_mask(apply_symmetric_mask):
2351
- obj_to_pre_serialize = random.choice(list(locals().values()))
2326
+ obj_to_pre_serialize = apply_symmetric_mask
2352
2327
  serializable_rep = obj_to_pre_serialize
2353
2328
 
2354
2329
  return serializable_rep
@@ -2608,25 +2583,22 @@ def crop(input_signal, optional_params=_default_optional_params):
2608
2583
 
2609
2584
  """
2610
2585
  params = locals()
2611
- params["action_to_apply_to_input_signal"] = inspect.stack()[0][3]
2586
+ params["action_to_apply_to_input_signal"] = "crop"
2587
+ global_symbol_table = globals()
2612
2588
  for param_name in params:
2613
2589
  func_name = "_check_and_convert_" + param_name
2614
- func_alias = globals()[func_name]
2590
+ func_alias = global_symbol_table[func_name]
2615
2591
  params[param_name] = func_alias(params)
2616
2592
 
2617
- func_name = "_" + inspect.stack()[0][3]
2618
- func_alias = globals()[func_name]
2619
2593
  kwargs = params
2620
2594
  del kwargs["action_to_apply_to_input_signal"]
2621
- output_signal = func_alias(**kwargs)
2595
+ output_signal = _crop(**kwargs)
2622
2596
 
2623
2597
  return output_signal
2624
2598
 
2625
2599
 
2626
2600
 
2627
2601
  def _crop(input_signal, optional_params):
2628
- current_func_name = inspect.stack()[0][3]
2629
-
2630
2602
  optional_params_core_attrs = optional_params.get_core_attrs(deep_copy=False)
2631
2603
  title = optional_params_core_attrs["title"]
2632
2604
 
@@ -2637,6 +2609,8 @@ def _crop(input_signal, optional_params):
2637
2609
  navigation_dims = input_signal.data.shape[:-2]
2638
2610
  num_patterns = int(np.prod(navigation_dims))
2639
2611
 
2612
+ current_func_name = "_crop"
2613
+
2640
2614
  for pattern_idx in range(0, num_patterns):
2641
2615
  navigation_indices = np.unravel_index(pattern_idx, navigation_dims)
2642
2616
  input_signal_datasubset = input_signal.data[navigation_indices]
@@ -2798,9 +2772,7 @@ def _crop_input_signal_datasubset(input_signal_datasubset,
2798
2772
 
2799
2773
 
2800
2774
  def _check_and_convert_block_dims(params):
2801
- current_func_name = inspect.stack()[0][3]
2802
- char_idx = 19
2803
- obj_name = current_func_name[char_idx:]
2775
+ obj_name = "block_dims"
2804
2776
  kwargs = {"obj": params[obj_name], "obj_name": obj_name}
2805
2777
  block_dims = czekitout.convert.to_pair_of_positive_ints(**kwargs)
2806
2778
 
@@ -2809,7 +2781,7 @@ def _check_and_convert_block_dims(params):
2809
2781
 
2810
2782
 
2811
2783
  def _pre_serialize_block_dims(block_dims):
2812
- obj_to_pre_serialize = random.choice(list(locals().values()))
2784
+ obj_to_pre_serialize = block_dims
2813
2785
  serializable_rep = obj_to_pre_serialize
2814
2786
 
2815
2787
  return serializable_rep
@@ -2824,9 +2796,7 @@ def _de_pre_serialize_block_dims(serializable_rep):
2824
2796
 
2825
2797
 
2826
2798
  def _check_and_convert_padding_const(params):
2827
- current_func_name = inspect.stack()[0][3]
2828
- char_idx = 19
2829
- obj_name = current_func_name[char_idx:]
2799
+ obj_name = "padding_const"
2830
2800
  kwargs = {"obj": params[obj_name], "obj_name": obj_name}
2831
2801
  padding_const = czekitout.convert.to_float(**kwargs)
2832
2802
 
@@ -2835,7 +2805,7 @@ def _check_and_convert_padding_const(params):
2835
2805
 
2836
2806
 
2837
2807
  def _pre_serialize_padding_const(padding_const):
2838
- obj_to_pre_serialize = random.choice(list(locals().values()))
2808
+ obj_to_pre_serialize = padding_const
2839
2809
  serializable_rep = obj_to_pre_serialize
2840
2810
 
2841
2811
  return serializable_rep
@@ -2850,9 +2820,7 @@ def _de_pre_serialize_padding_const(serializable_rep):
2850
2820
 
2851
2821
 
2852
2822
  def _check_and_convert_downsample_mode(params):
2853
- current_func_name = inspect.stack()[0][3]
2854
- char_idx = 19
2855
- obj_name = current_func_name[char_idx:]
2823
+ obj_name = "downsample_mode"
2856
2824
  kwargs = {"obj": params[obj_name], "obj_name": obj_name}
2857
2825
  downsample_mode = czekitout.convert.to_str_from_str_like(**kwargs)
2858
2826
 
@@ -2864,7 +2832,7 @@ def _check_and_convert_downsample_mode(params):
2864
2832
 
2865
2833
 
2866
2834
  def _pre_serialize_downsample_mode(downsample_mode):
2867
- obj_to_pre_serialize = random.choice(list(locals().values()))
2835
+ obj_to_pre_serialize = downsample_mode
2868
2836
  serializable_rep = obj_to_pre_serialize
2869
2837
 
2870
2838
  return serializable_rep
@@ -3059,17 +3027,16 @@ def downsample(input_signal, optional_params=_default_optional_params):
3059
3027
 
3060
3028
  """
3061
3029
  params = locals()
3062
- params["action_to_apply_to_input_signal"] = inspect.stack()[0][3]
3030
+ params["action_to_apply_to_input_signal"] = "downsample"
3031
+ global_symbol_table = globals()
3063
3032
  for param_name in params:
3064
3033
  func_name = "_check_and_convert_" + param_name
3065
- func_alias = globals()[func_name]
3034
+ func_alias = global_symbol_table[func_name]
3066
3035
  params[param_name] = func_alias(params)
3067
3036
 
3068
- func_name = "_" + inspect.stack()[0][3]
3069
- func_alias = globals()[func_name]
3070
3037
  kwargs = params
3071
3038
  del kwargs["action_to_apply_to_input_signal"]
3072
- output_signal = func_alias(**kwargs)
3039
+ output_signal = _downsample(**kwargs)
3073
3040
 
3074
3041
  return output_signal
3075
3042
 
@@ -3134,14 +3101,14 @@ def _downsample_input_signal_datasubset(input_signal_datasubset,
3134
3101
 
3135
3102
 
3136
3103
  def _check_and_convert_new_signal_space_sizes(params):
3137
- current_func_name = inspect.stack()[0][3]
3138
- char_idx = 19
3139
- obj_name = current_func_name[char_idx:]
3104
+ obj_name = "new_signal_space_sizes"
3140
3105
  obj = params[obj_name]
3141
3106
 
3142
3107
  param_name = "input_signal"
3143
3108
  input_signal = params.get(param_name, None)
3144
3109
 
3110
+ current_func_name = "_check_and_convert_new_signal_space_sizes"
3111
+
3145
3112
  if obj is not None:
3146
3113
  try:
3147
3114
  func_alias = czekitout.convert.to_pair_of_positive_ints
@@ -3162,7 +3129,7 @@ def _check_and_convert_new_signal_space_sizes(params):
3162
3129
 
3163
3130
 
3164
3131
  def _pre_serialize_new_signal_space_sizes(new_signal_space_sizes):
3165
- obj_to_pre_serialize = random.choice(list(locals().values()))
3132
+ obj_to_pre_serialize = new_signal_space_sizes
3166
3133
  serializable_rep = obj_to_pre_serialize
3167
3134
 
3168
3135
  return serializable_rep
@@ -3177,14 +3144,14 @@ def _de_pre_serialize_new_signal_space_sizes(serializable_rep):
3177
3144
 
3178
3145
 
3179
3146
  def _check_and_convert_new_signal_space_scales(params):
3180
- current_func_name = inspect.stack()[0][3]
3181
- char_idx = 19
3182
- obj_name = current_func_name[char_idx:]
3147
+ obj_name = "new_signal_space_scales"
3183
3148
  obj = params[obj_name]
3184
3149
 
3185
3150
  param_name = "input_signal"
3186
3151
  input_signal = params.get(param_name, None)
3187
3152
 
3153
+ current_func_name = "_check_and_convert_new_signal_space_scales"
3154
+
3188
3155
  if obj is not None:
3189
3156
  try:
3190
3157
  func_alias = czekitout.convert.to_pair_of_floats
@@ -3209,7 +3176,7 @@ def _check_and_convert_new_signal_space_scales(params):
3209
3176
 
3210
3177
 
3211
3178
  def _pre_serialize_new_signal_space_scales(new_signal_space_scales):
3212
- obj_to_pre_serialize = random.choice(list(locals().values()))
3179
+ obj_to_pre_serialize = new_signal_space_scales
3213
3180
  serializable_rep = obj_to_pre_serialize
3214
3181
 
3215
3182
  return serializable_rep
@@ -3224,14 +3191,14 @@ def _de_pre_serialize_new_signal_space_scales(serializable_rep):
3224
3191
 
3225
3192
 
3226
3193
  def _check_and_convert_new_signal_space_offsets(params):
3227
- current_func_name = inspect.stack()[0][3]
3228
- char_idx = 19
3229
- obj_name = current_func_name[char_idx:]
3194
+ obj_name = "new_signal_space_offsets"
3230
3195
  obj = params[obj_name]
3231
3196
 
3232
3197
  param_name = "input_signal"
3233
3198
  input_signal = params.get(param_name, None)
3234
3199
 
3200
+ current_func_name = "_check_and_convert_new_signal_space_offsets"
3201
+
3235
3202
  if obj is not None:
3236
3203
  try:
3237
3204
  func_alias = czekitout.convert.to_pair_of_floats
@@ -3252,7 +3219,7 @@ def _check_and_convert_new_signal_space_offsets(params):
3252
3219
 
3253
3220
 
3254
3221
  def _pre_serialize_new_signal_space_offsets(new_signal_space_offsets):
3255
- obj_to_pre_serialize = random.choice(list(locals().values()))
3222
+ obj_to_pre_serialize = new_signal_space_offsets
3256
3223
  serializable_rep = obj_to_pre_serialize
3257
3224
 
3258
3225
  return serializable_rep
@@ -3267,12 +3234,12 @@ def _de_pre_serialize_new_signal_space_offsets(serializable_rep):
3267
3234
 
3268
3235
 
3269
3236
  def _check_and_convert_spline_degrees(params):
3270
- current_func_name = inspect.stack()[0][3]
3271
- char_idx = 19
3272
- obj_name = current_func_name[char_idx:]
3237
+ obj_name = "spline_degrees"
3273
3238
  kwargs = {"obj": params[obj_name], "obj_name": obj_name}
3274
3239
  spline_degrees = czekitout.convert.to_pair_of_positive_ints(**kwargs)
3275
3240
 
3241
+ current_func_name = "_check_and_convert_spline_degrees"
3242
+
3276
3243
  if (spline_degrees[0] > 5) or (spline_degrees[1] > 5):
3277
3244
  err_msg = globals()[current_func_name+"_err_msg_1"]
3278
3245
  raise ValueError(err_msg)
@@ -3282,7 +3249,7 @@ def _check_and_convert_spline_degrees(params):
3282
3249
 
3283
3250
 
3284
3251
  def _pre_serialize_spline_degrees(spline_degrees):
3285
- obj_to_pre_serialize = random.choice(list(locals().values()))
3252
+ obj_to_pre_serialize = spline_degrees
3286
3253
  serializable_rep = obj_to_pre_serialize
3287
3254
 
3288
3255
  return serializable_rep
@@ -3297,9 +3264,7 @@ def _de_pre_serialize_spline_degrees(serializable_rep):
3297
3264
 
3298
3265
 
3299
3266
  def _check_and_convert_interpolate_polar_cmpnts(params):
3300
- current_func_name = inspect.stack()[0][3]
3301
- char_idx = 19
3302
- obj_name = current_func_name[char_idx:]
3267
+ obj_name = "interpolate_polar_cmpnts"
3303
3268
  kwargs = {"obj": params[obj_name], "obj_name": obj_name}
3304
3269
  interpolate_polar_cmpnts = czekitout.convert.to_bool(**kwargs)
3305
3270
 
@@ -3308,7 +3273,7 @@ def _check_and_convert_interpolate_polar_cmpnts(params):
3308
3273
 
3309
3274
 
3310
3275
  def _pre_serialize_interpolate_polar_cmpnts(interpolate_polar_cmpnts):
3311
- obj_to_pre_serialize = random.choice(list(locals().values()))
3276
+ obj_to_pre_serialize = interpolate_polar_cmpnts
3312
3277
  serializable_rep = obj_to_pre_serialize
3313
3278
 
3314
3279
  return serializable_rep
@@ -3521,17 +3486,16 @@ def resample(input_signal, optional_params=_default_optional_params):
3521
3486
 
3522
3487
  """
3523
3488
  params = locals()
3524
- params["action_to_apply_to_input_signal"] = inspect.stack()[0][3]
3489
+ params["action_to_apply_to_input_signal"] = "resample"
3490
+ global_symbol_table = globals()
3525
3491
  for param_name in params:
3526
3492
  func_name = "_check_and_convert_" + param_name
3527
- func_alias = globals()[func_name]
3493
+ func_alias = global_symbol_table[func_name]
3528
3494
  params[param_name] = func_alias(params)
3529
3495
 
3530
- func_name = "_" + inspect.stack()[0][3]
3531
- func_alias = globals()[func_name]
3532
3496
  kwargs = params
3533
3497
  del kwargs["action_to_apply_to_input_signal"]
3534
- output_signal = func_alias(**kwargs)
3498
+ output_signal = _resample(**kwargs)
3535
3499
 
3536
3500
  return output_signal
3537
3501
 
@@ -12,5 +12,5 @@ __version__: str
12
12
  __version_tuple__: VERSION_TUPLE
13
13
  version_tuple: VERSION_TUPLE
14
14
 
15
- __version__ = version = '0.0.1'
16
- __version_tuple__ = version_tuple = (0, 0, 1)
15
+ __version__ = version = '0.0.2'
16
+ __version_tuple__ = version_tuple = (0, 0, 2)
@@ -1,6 +1,6 @@
1
- Metadata-Version: 2.1
1
+ Metadata-Version: 2.2
2
2
  Name: empix
3
- Version: 0.0.1
3
+ Version: 0.0.2
4
4
  Summary: Contains tools for analyzing electron microscopy data that are not available in ``hyperspy``.
5
5
  Author-email: Matthew Fitzpatrick <matthew.rc.fitzpatrick@gmail.com>
6
6
  Project-URL: Homepage, https://mrfitzpa.github.io/empix
@@ -52,7 +52,7 @@ Requires-Dist: empix[docs,examples,tests]; extra == "all"
52
52
  microscopy data that are not available in
53
53
  [`hyperspy`](https://hyperspy.org/hyperspy-doc/current/index.html).
54
54
 
55
- Visit the `empix` [website](https://mrfitzpa.gitlab.io/empix) for a web version
55
+ Visit the `empix` [website](https://mrfitzpa.github.io/empix) for a web version
56
56
  of the installation instructions, the reference guide, and the examples archive.
57
57
 
58
58
  <!--
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