emmet-builders 0.84.5__tar.gz → 0.84.6__tar.gz

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  1. {emmet_builders-0.84.5/emmet_builders.egg-info → emmet_builders-0.84.6}/PKG-INFO +13 -3
  2. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/ml.py +2 -2
  3. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/vasp/materials.py +1 -0
  4. {emmet_builders-0.84.5 → emmet_builders-0.84.6/emmet_builders.egg-info}/PKG-INFO +13 -3
  5. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/requirements/ubuntu-latest_py3.10.txt +87 -74
  6. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/requirements/ubuntu-latest_py3.10_extras.txt +124 -114
  7. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/requirements/ubuntu-latest_py3.11.txt +87 -74
  8. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/requirements/ubuntu-latest_py3.11_extras.txt +123 -114
  9. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/setup.py +1 -1
  10. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/test_elasticity.py +1 -1
  11. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/MANIFEST.in +0 -0
  12. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/__init__.py +0 -0
  13. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/abinit/__init__.py +0 -0
  14. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/abinit/phonon.py +0 -0
  15. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/abinit/sound_velocity.py +0 -0
  16. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/feff/__init__.py +0 -0
  17. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/feff/xas.py +0 -0
  18. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/__init__.py +0 -0
  19. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/absorption_spectrum.py +0 -0
  20. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/alloys.py +0 -0
  21. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/basic_descriptors.py +0 -0
  22. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/bonds.py +0 -0
  23. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/chemenv.py +0 -0
  24. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/corrected_entries.py +0 -0
  25. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/dielectric.py +0 -0
  26. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/elasticity.py +0 -0
  27. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/electrodes.py +0 -0
  28. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/electronic_structure.py +0 -0
  29. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/magnetism.py +0 -0
  30. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/optimade.py +0 -0
  31. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/oxidation_states.py +0 -0
  32. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/piezoelectric.py +0 -0
  33. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/provenance.py +0 -0
  34. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/robocrys.py +0 -0
  35. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/similarity.py +0 -0
  36. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/substrates.py +0 -0
  37. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/summary.py +0 -0
  38. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/materials/thermo.py +0 -0
  39. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/matscholar/missing_compositions.py +0 -0
  40. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/mobility/__init__.py +0 -0
  41. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/mobility/migration_graph.py +0 -0
  42. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/molecules/__init__.py +0 -0
  43. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/molecules/atomic.py +0 -0
  44. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/molecules/bonds.py +0 -0
  45. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/molecules/electric.py +0 -0
  46. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/molecules/metal_binding.py +0 -0
  47. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/molecules/orbitals.py +0 -0
  48. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/molecules/redox.py +0 -0
  49. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/molecules/summary.py +0 -0
  50. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/molecules/thermo.py +0 -0
  51. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/molecules/trajectory.py +0 -0
  52. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/molecules/vibration.py +0 -0
  53. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/qchem/__init__.py +0 -0
  54. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/qchem/molecules.py +0 -0
  55. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/settings.py +0 -0
  56. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/utils.py +0 -0
  57. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/vasp/__init__.py +0 -0
  58. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/vasp/mp_potcar_stats.json.gz +0 -0
  59. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet/builders/vasp/task_validator.py +0 -0
  60. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet_builders.egg-info/SOURCES.txt +0 -0
  61. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet_builders.egg-info/dependency_links.txt +0 -0
  62. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet_builders.egg-info/not-zip-safe +0 -0
  63. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet_builders.egg-info/requires.txt +0 -0
  64. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/emmet_builders.egg-info/top_level.txt +0 -0
  65. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/requirements/deployment.txt +0 -0
  66. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/setup.cfg +0 -0
  67. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/__init__.py +0 -0
  68. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/conftest.py +0 -0
  69. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/molecules/__init__.py +0 -0
  70. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/molecules/test_atomic.py +0 -0
  71. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/molecules/test_bonds.py +0 -0
  72. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/molecules/test_electric.py +0 -0
  73. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/molecules/test_metal_binding.py +0 -0
  74. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/molecules/test_orbitals.py +0 -0
  75. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/molecules/test_redox.py +0 -0
  76. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/molecules/test_summary.py +0 -0
  77. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/molecules/test_thermo.py +0 -0
  78. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/molecules/test_trajectory.py +0 -0
  79. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/molecules/test_vibration.py +0 -0
  80. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/test_absorption.py +0 -0
  81. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/test_basic_descriptors.py +0 -0
  82. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/test_chemenv.py +0 -0
  83. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/test_corrected_entries_thermo.py +0 -0
  84. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/test_dielectric.py +0 -0
  85. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/test_electronic_structure.py +0 -0
  86. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/test_magnetism.py +0 -0
  87. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/test_materials.py +0 -0
  88. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/test_ml.py +0 -0
  89. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/test_mobility.py +0 -0
  90. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/test_oxidation.py +0 -0
  91. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/test_piezoelectric.py +0 -0
  92. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/test_qchem.py +0 -0
  93. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/test_similarity.py +0 -0
  94. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/test_summary.py +0 -0
  95. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/test_utils.py +0 -0
  96. {emmet_builders-0.84.5 → emmet_builders-0.84.6}/tests/test_vasp.py +0 -0
@@ -1,12 +1,12 @@
1
- Metadata-Version: 2.1
1
+ Metadata-Version: 2.4
2
2
  Name: emmet-builders
3
- Version: 0.84.5
3
+ Version: 0.84.6
4
4
  Summary: Builders for the Emmet Library
5
5
  Home-page: https://github.com/materialsproject/emmet
6
6
  Author: The Materials Project
7
7
  Author-email: feedback@materialsproject.org
8
8
  License: modified BSD
9
- Requires-Python: >=3.9
9
+ Requires-Python: >=3.10
10
10
  Description-Content-Type: text/markdown
11
11
  Requires-Dist: emmet-core[all]
12
12
  Requires-Dist: maggma>=0.57.6
@@ -40,6 +40,16 @@ Provides-Extra: ml
40
40
  Requires-Dist: emmet-core[ml]; extra == "ml"
41
41
  Provides-Extra: openmm
42
42
  Requires-Dist: transport-analysis>=0.1.0; extra == "openmm"
43
+ Dynamic: author
44
+ Dynamic: author-email
45
+ Dynamic: description
46
+ Dynamic: description-content-type
47
+ Dynamic: home-page
48
+ Dynamic: license
49
+ Dynamic: provides-extra
50
+ Dynamic: requires-dist
51
+ Dynamic: requires-python
52
+ Dynamic: summary
43
53
 
44
54
  # ![Emmet](docs/images/logo_w_text.svg)
45
55
 
@@ -3,7 +3,7 @@ from typing import TYPE_CHECKING, Optional, Union
3
3
 
4
4
  from maggma.builders.map_builder import MapBuilder
5
5
  from maggma.core import Store
6
- from matcalc.utils import get_universal_calculator
6
+ from matcalc import PESCalculator
7
7
  from pymatgen.core import Structure
8
8
 
9
9
  from emmet.core.ml import MLDoc
@@ -43,7 +43,7 @@ class MLBuilder(MapBuilder):
43
43
  self.materials = materials
44
44
  self.ml_potential = ml_potential
45
45
  self.kwargs = kwargs
46
- self.model = get_universal_calculator(model, **(model_kwargs or {}))
46
+ self.model = PESCalculator.load_universal(model, **(model_kwargs or {}))
47
47
  self.prop_kwargs = prop_kwargs or {}
48
48
 
49
49
  if provenance == {}:
@@ -186,6 +186,7 @@ class MaterialsBuilder(Builder):
186
186
  # needed for run_type and task_type
187
187
  "calcs_reversed.input.parameters",
188
188
  "calcs_reversed.input.incar",
189
+ "calcs_reversed.run_type",
189
190
  "orig_inputs",
190
191
  "input.structure",
191
192
  # needed for entry from task_doc
@@ -1,12 +1,12 @@
1
- Metadata-Version: 2.1
1
+ Metadata-Version: 2.4
2
2
  Name: emmet-builders
3
- Version: 0.84.5
3
+ Version: 0.84.6
4
4
  Summary: Builders for the Emmet Library
5
5
  Home-page: https://github.com/materialsproject/emmet
6
6
  Author: The Materials Project
7
7
  Author-email: feedback@materialsproject.org
8
8
  License: modified BSD
9
- Requires-Python: >=3.9
9
+ Requires-Python: >=3.10
10
10
  Description-Content-Type: text/markdown
11
11
  Requires-Dist: emmet-core[all]
12
12
  Requires-Dist: maggma>=0.57.6
@@ -40,6 +40,16 @@ Provides-Extra: ml
40
40
  Requires-Dist: emmet-core[ml]; extra == "ml"
41
41
  Provides-Extra: openmm
42
42
  Requires-Dist: transport-analysis>=0.1.0; extra == "openmm"
43
+ Dynamic: author
44
+ Dynamic: author-email
45
+ Dynamic: description
46
+ Dynamic: description-content-type
47
+ Dynamic: home-page
48
+ Dynamic: license
49
+ Dynamic: provides-extra
50
+ Dynamic: requires-dist
51
+ Dynamic: requires-python
52
+ Dynamic: summary
43
53
 
44
54
  # ![Emmet](docs/images/logo_w_text.svg)
45
55
 
@@ -8,34 +8,34 @@ aioitertools==0.12.0
8
8
  # via maggma
9
9
  annotated-types==0.7.0
10
10
  # via pydantic
11
- ase==3.23.0
11
+ ase==3.24.0
12
12
  # via
13
13
  # matcalc
14
14
  # pymatgen-analysis-diffusion
15
- attrs==24.3.0
15
+ attrs==25.3.0
16
16
  # via
17
17
  # jsonlines
18
18
  # jsonschema
19
19
  # referencing
20
- bcrypt==4.2.1
20
+ bcrypt==4.3.0
21
21
  # via paramiko
22
- boto3==1.35.83
22
+ boto3==1.37.23
23
23
  # via maggma
24
- botocore==1.35.83
24
+ botocore==1.37.23
25
25
  # via
26
26
  # boto3
27
27
  # s3transfer
28
- certifi==2024.12.14
28
+ certifi==2025.1.31
29
29
  # via requests
30
30
  cffi==1.17.1
31
31
  # via
32
32
  # cryptography
33
33
  # pynacl
34
- charset-normalizer==3.4.0
34
+ charset-normalizer==3.4.1
35
35
  # via requests
36
36
  contourpy==1.3.1
37
37
  # via matplotlib
38
- cryptography==44.0.0
38
+ cryptography==44.0.2
39
39
  # via paramiko
40
40
  cycler==0.12.1
41
41
  # via matplotlib
@@ -43,27 +43,31 @@ dnspython==2.7.0
43
43
  # via
44
44
  # maggma
45
45
  # pymongo
46
- emmet-core[all]==0.84.4
46
+ emmet-core[all]==0.84.5
47
47
  # via
48
48
  # emmet-builders (setup.py)
49
49
  # mp-api
50
50
  exceptiongroup==1.2.2
51
51
  # via pytest
52
- fasteners==0.19
52
+ filelock==3.18.0
53
53
  # via mdanalysis
54
- fonttools==4.55.3
54
+ fonttools==4.56.0
55
55
  # via matplotlib
56
+ fsspec==2025.3.1
57
+ # via matcalc
56
58
  griddataformats==1.0.2
57
59
  # via mdanalysis
58
- h5py==3.12.1
59
- # via phonopy
60
+ h5py==3.13.0
61
+ # via
62
+ # phono3py
63
+ # phonopy
60
64
  idna==3.10
61
65
  # via requests
62
- imageio==2.36.1
66
+ imageio==2.37.0
63
67
  # via scikit-image
64
- inflect==7.4.0
68
+ inflect==7.5.0
65
69
  # via robocrys
66
- iniconfig==2.0.0
70
+ iniconfig==2.1.0
67
71
  # via pytest
68
72
  jmespath==1.0.1
69
73
  # via
@@ -82,48 +86,43 @@ jsonschema==4.23.0
82
86
  # via maggma
83
87
  jsonschema-specifications==2024.10.1
84
88
  # via jsonschema
85
- kiwisolver==1.4.7
89
+ kiwisolver==1.4.8
86
90
  # via matplotlib
87
91
  latexcodec==3.0.0
88
92
  # via pybtex
89
93
  lazy-loader==0.4
90
94
  # via scikit-image
91
- maggma==0.70.0
95
+ maggma==0.71.5
92
96
  # via
93
97
  # emmet-builders (setup.py)
94
98
  # mp-api
95
- matcalc==0.0.4
99
+ matcalc==0.3.2
96
100
  # via emmet-core
97
101
  matminer==0.9.3
98
102
  # via
99
103
  # emmet-builders (setup.py)
100
104
  # robocrys
101
- matplotlib==3.10.0
105
+ matplotlib==3.10.1
102
106
  # via
103
107
  # ase
104
108
  # mdanalysis
105
- # pathsimanalysis
109
+ # phono3py
106
110
  # phonopy
107
111
  # pymatgen
108
112
  # seaborn
109
113
  # solvation-analysis
110
114
  mda-xdrlib==0.2.0
111
115
  # via mdanalysis
112
- mdahole2==0.5.0
113
- # via mdanalysis
114
- mdanalysis==2.8.0
116
+ mdanalysis==2.9.0
115
117
  # via
116
118
  # emmet-builders (setup.py)
117
119
  # emmet-core
118
- # mdahole2
119
- # pathsimanalysis
120
120
  # solvation-analysis
121
- # waterdynamics
122
121
  mmtf-python==1.1.3
123
122
  # via mdanalysis
124
123
  mongomock==4.3.0
125
124
  # via maggma
126
- monty==2024.12.10
125
+ monty==2025.3.3
127
126
  # via
128
127
  # emmet-core
129
128
  # maggma
@@ -131,21 +130,23 @@ monty==2024.12.10
131
130
  # mp-api
132
131
  # pymatgen
133
132
  # robocrys
134
- more-itertools==10.5.0
133
+ more-itertools==10.6.0
135
134
  # via inflect
136
- mp-api==0.44.0
135
+ mp-api==0.45.3
137
136
  # via robocrys
138
137
  mp-pyrho==0.4.5
139
138
  # via pymatgen-analysis-defects
140
139
  mpmath==1.3.0
141
140
  # via sympy
142
- mrcfile==1.5.3
141
+ mrcfile==1.5.4
143
142
  # via griddataformats
144
143
  msgpack==1.1.0
145
144
  # via
146
145
  # maggma
147
146
  # mmtf-python
148
147
  # mp-api
148
+ narwhals==1.32.0
149
+ # via plotly
149
150
  networkx==3.4.2
150
151
  # via
151
152
  # pymatgen
@@ -160,14 +161,15 @@ numpy==1.26.4
160
161
  # h5py
161
162
  # imageio
162
163
  # maggma
164
+ # matcalc
163
165
  # matminer
164
166
  # matplotlib
165
167
  # mdanalysis
166
168
  # monty
167
169
  # mrcfile
168
170
  # pandas
169
- # pathsimanalysis
170
171
  # patsy
172
+ # phono3py
171
173
  # phonopy
172
174
  # pymatgen
173
175
  # pymatgen-analysis-defects
@@ -183,9 +185,9 @@ numpy==1.26.4
183
185
  # solvation-analysis
184
186
  # spglib
185
187
  # statsmodels
188
+ # symfc
186
189
  # tifffile
187
- # waterdynamics
188
- orjson==3.10.12
190
+ orjson==3.10.16
189
191
  # via maggma
190
192
  packaging==24.2
191
193
  # via
@@ -207,21 +209,23 @@ pandas==2.2.3
207
209
  # seaborn
208
210
  # solvation-analysis
209
211
  # statsmodels
210
- paramiko==3.5.0
212
+ paramiko==3.5.1
211
213
  # via sshtunnel
212
- pathsimanalysis==1.2.0
213
- # via mdanalysis
214
214
  patsy==1.0.1
215
215
  # via statsmodels
216
- phonopy==2.33.3
216
+ phono3py==3.15.0
217
217
  # via matcalc
218
- pillow==11.0.0
218
+ phonopy==2.38.0
219
+ # via
220
+ # matcalc
221
+ # phono3py
222
+ pillow==11.1.0
219
223
  # via
220
224
  # imageio
221
225
  # matplotlib
222
226
  # rdkit
223
227
  # scikit-image
224
- plotly==5.24.1
228
+ plotly==6.0.1
225
229
  # via
226
230
  # pymatgen
227
231
  # solvation-analysis
@@ -236,20 +240,20 @@ pybtex==0.24.0
236
240
  # robocrys
237
241
  pycparser==2.22
238
242
  # via cffi
239
- pydantic==2.10.4
243
+ pydantic==2.11.1
240
244
  # via
241
245
  # emmet-core
242
246
  # maggma
243
247
  # pydantic-settings
244
- pydantic-core==2.27.2
248
+ pydantic-core==2.33.0
245
249
  # via pydantic
246
- pydantic-settings==2.7.0
250
+ pydantic-settings==2.8.1
247
251
  # via
248
252
  # emmet-core
249
253
  # maggma
250
- pydash==8.0.4
254
+ pydash==8.0.5
251
255
  # via maggma
252
- pymatgen==2024.11.13
256
+ pymatgen==2025.3.10
253
257
  # via
254
258
  # emmet-core
255
259
  # matcalc
@@ -262,7 +266,7 @@ pymatgen==2024.11.13
262
266
  # robocrys
263
267
  pymatgen-analysis-alloys==0.0.7
264
268
  # via emmet-core
265
- pymatgen-analysis-defects==2024.10.22
269
+ pymatgen-analysis-defects==2025.1.18
266
270
  # via emmet-core
267
271
  pymatgen-analysis-diffusion==2024.7.15
268
272
  # via emmet-core
@@ -272,9 +276,9 @@ pymongo==4.10.1
272
276
  # matminer
273
277
  pynacl==1.5.0
274
278
  # via paramiko
275
- pyparsing==3.2.0
279
+ pyparsing==3.2.3
276
280
  # via matplotlib
277
- pytest==8.3.4
281
+ pytest==8.3.5
278
282
  # via solvation-analysis
279
283
  python-dateutil==2.9.0.post0
280
284
  # via
@@ -282,21 +286,22 @@ python-dateutil==2.9.0.post0
282
286
  # maggma
283
287
  # matplotlib
284
288
  # pandas
285
- python-dotenv==1.0.1
289
+ python-dotenv==1.1.0
286
290
  # via pydantic-settings
287
- pytz==2024.2
291
+ pytz==2025.2
288
292
  # via
289
293
  # mongomock
290
294
  # pandas
291
295
  pyyaml==6.0.2
292
296
  # via
297
+ # phono3py
293
298
  # phonopy
294
299
  # pybtex
295
- pyzmq==26.2.0
300
+ pyzmq==26.3.0
296
301
  # via maggma
297
- rdkit==2024.3.6
302
+ rdkit==2024.9.6
298
303
  # via solvation-analysis
299
- referencing==0.35.1
304
+ referencing==0.36.2
300
305
  # via
301
306
  # jsonschema
302
307
  # jsonschema-specifications
@@ -307,11 +312,11 @@ requests==2.32.3
307
312
  # pymatgen
308
313
  robocrys==0.2.10
309
314
  # via emmet-core
310
- rpds-py==0.22.3
315
+ rpds-py==0.24.0
311
316
  # via
312
317
  # jsonschema
313
318
  # referencing
314
- ruamel-yaml==0.18.6
319
+ ruamel-yaml==0.18.10
315
320
  # via
316
321
  # maggma
317
322
  # monty
@@ -319,31 +324,34 @@ ruamel-yaml==0.18.6
319
324
  # robocrys
320
325
  ruamel-yaml-clib==0.2.12
321
326
  # via ruamel-yaml
322
- s3transfer==0.10.4
327
+ s3transfer==0.11.4
323
328
  # via boto3
324
- scikit-image==0.25.0
329
+ scikit-image==0.25.2
325
330
  # via pymatgen-analysis-defects
326
- scikit-learn==1.6.0
327
- # via matminer
328
- scipy==1.14.1
331
+ scikit-learn==1.6.1
332
+ # via
333
+ # matcalc
334
+ # matminer
335
+ scipy==1.15.2
329
336
  # via
330
337
  # ase
331
338
  # griddataformats
332
339
  # mdanalysis
333
- # pathsimanalysis
340
+ # phono3py
334
341
  # pymatgen
335
342
  # robocrys
336
343
  # scikit-image
337
344
  # scikit-learn
338
345
  # solvation-analysis
339
346
  # statsmodels
347
+ # symfc
340
348
  seaborn==0.13.2
341
349
  # via pymatgen-analysis-diffusion
342
350
  seekpath==2.1.0
343
351
  # via emmet-core
344
352
  sentinels==1.0.0
345
353
  # via mongomock
346
- shapely==2.0.6
354
+ shapely==2.0.7
347
355
  # via pymatgen-analysis-alloys
348
356
  six==1.17.0
349
357
  # via
@@ -355,29 +363,31 @@ solvation-analysis==0.4.1
355
363
  # via
356
364
  # emmet-builders (setup.py)
357
365
  # emmet-core
358
- spglib==2.5.0
366
+ spglib==2.6.0
359
367
  # via
368
+ # phono3py
360
369
  # phonopy
361
370
  # pymatgen
362
371
  # robocrys
363
372
  # seekpath
373
+ # symfc
364
374
  sshtunnel==0.4.0
365
375
  # via maggma
366
376
  statsmodels==0.14.4
367
377
  # via solvation-analysis
378
+ symfc==1.3.4
379
+ # via phonopy
368
380
  sympy==1.13.3
369
381
  # via
370
382
  # matminer
371
383
  # pymatgen
372
384
  tabulate==0.9.0
373
385
  # via pymatgen
374
- tenacity==9.0.0
375
- # via plotly
376
- threadpoolctl==3.5.0
386
+ threadpoolctl==3.6.0
377
387
  # via
378
388
  # mdanalysis
379
389
  # scikit-learn
380
- tifffile==2024.12.12
390
+ tifffile==2025.3.30
381
391
  # via scikit-image
382
392
  tomli==2.2.1
383
393
  # via pytest
@@ -387,27 +397,30 @@ tqdm==4.67.1
387
397
  # matminer
388
398
  # mdanalysis
389
399
  # pymatgen
390
- typeguard==4.4.1
400
+ typeguard==4.4.2
391
401
  # via inflect
392
- typing-extensions==4.12.2
402
+ typing-extensions==4.13.0
393
403
  # via
394
404
  # emmet-core
395
405
  # mp-api
396
406
  # pydantic
397
407
  # pydantic-core
398
408
  # pydash
409
+ # referencing
410
+ # spglib
399
411
  # typeguard
400
- tzdata==2024.2
412
+ # typing-inspection
413
+ typing-inspection==0.4.0
414
+ # via pydantic
415
+ tzdata==2025.2
401
416
  # via pandas
402
417
  uncertainties==3.2.2
403
418
  # via pymatgen
404
- urllib3==2.2.3
419
+ urllib3==2.3.0
405
420
  # via
406
421
  # botocore
407
422
  # requests
408
- waterdynamics==1.2.0
409
- # via mdanalysis
410
- wrapt==1.17.0
423
+ wrapt==1.17.2
411
424
  # via smart-open
412
425
 
413
426
  # The following packages are considered to be unsafe in a requirements file: