emmet-builders 0.84.3rc4__tar.gz → 0.84.4__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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- emmet_builders-0.84.4/PKG-INFO +49 -0
- emmet_builders-0.84.4/emmet_builders.egg-info/PKG-INFO +49 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/requirements/ubuntu-latest_py3.10.txt +40 -29
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/requirements/ubuntu-latest_py3.10_extras.txt +55 -42
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/requirements/ubuntu-latest_py3.11.txt +39 -28
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/requirements/ubuntu-latest_py3.11_extras.txt +53 -40
- emmet-builders-0.84.3rc4/PKG-INFO +0 -24
- emmet-builders-0.84.3rc4/emmet_builders.egg-info/PKG-INFO +0 -24
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/MANIFEST.in +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/__init__.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/abinit/__init__.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/abinit/phonon.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/abinit/sound_velocity.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/feff/__init__.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/feff/xas.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/__init__.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/absorption_spectrum.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/alloys.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/basic_descriptors.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/bonds.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/chemenv.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/corrected_entries.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/dielectric.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/elasticity.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/electrodes.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/electronic_structure.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/magnetism.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/ml.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/optimade.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/oxidation_states.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/piezoelectric.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/provenance.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/robocrys.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/similarity.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/substrates.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/summary.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/materials/thermo.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/matscholar/missing_compositions.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/mobility/__init__.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/mobility/migration_graph.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/molecules/__init__.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/molecules/atomic.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/molecules/bonds.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/molecules/electric.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/molecules/metal_binding.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/molecules/orbitals.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/molecules/redox.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/molecules/summary.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/molecules/thermo.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/molecules/trajectory.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/molecules/vibration.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/qchem/__init__.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/qchem/molecules.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/settings.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/utils.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/vasp/__init__.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/vasp/materials.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/vasp/mp_potcar_stats.json.gz +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet/builders/vasp/task_validator.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet_builders.egg-info/SOURCES.txt +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet_builders.egg-info/dependency_links.txt +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet_builders.egg-info/not-zip-safe +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet_builders.egg-info/requires.txt +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/emmet_builders.egg-info/top_level.txt +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/requirements/deployment.txt +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/setup.cfg +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/setup.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/__init__.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/conftest.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/molecules/__init__.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/molecules/test_atomic.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/molecules/test_bonds.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/molecules/test_electric.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/molecules/test_metal_binding.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/molecules/test_orbitals.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/molecules/test_redox.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/molecules/test_summary.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/molecules/test_thermo.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/molecules/test_trajectory.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/molecules/test_vibration.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/test_absorption.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/test_basic_descriptors.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/test_chemenv.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/test_corrected_entries_thermo.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/test_dielectric.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/test_elasticity.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/test_electronic_structure.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/test_magnetism.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/test_materials.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/test_ml.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/test_mobility.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/test_oxidation.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/test_piezoelectric.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/test_qchem.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/test_similarity.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/test_summary.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/test_utils.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/tests/test_vasp.py +0 -0
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Metadata-Version: 2.1
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Name: emmet-builders
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Version: 0.84.4
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Summary: Builders for the Emmet Library
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Home-page: https://github.com/materialsproject/emmet
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Author: The Materials Project
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License: modified BSD
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Requires-Python: >=3.9
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Description-Content-Type: text/markdown
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Requires-Dist: emmet-core[all]
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# 
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[](https://github.com/materialsproject/emmet/actions?query=workflow%3Atesting)
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[](https://codecov.io/gh/materialsproject/emmet)
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The Materials API Toolkit for the Materials Project. Emmet defines the core models, data pipelines, the API server, and the convenience CLI.
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Name: emmet-builders
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Version: 0.84.4
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Summary: Builders for the Emmet Library
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Home-page: https://github.com/materialsproject/emmet
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# 
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[](https://github.com/materialsproject/emmet/actions?query=workflow%3Atesting)
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The Materials API Toolkit for the Materials Project. Emmet defines the core models, data pipelines, the API server, and the convenience CLI.
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# jsonlines
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# referencing
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# via
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griddataformats==1.0.2
|
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57
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# via mdanalysis
|
|
@@ -59,7 +59,7 @@ h5py==3.12.1
|
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59
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# via phonopy
|
|
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idna==3.10
|
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# via requests
|
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imageio==2.36.
|
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+
imageio==2.36.1
|
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# via scikit-image
|
|
64
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inflect==7.4.0
|
|
65
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|
# via robocrys
|
|
@@ -98,26 +98,32 @@ matminer==0.9.3
|
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# via
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99
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# emmet-builders (setup.py)
|
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# robocrys
|
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-
matplotlib==3.9.
|
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+
matplotlib==3.9.3
|
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# via
|
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103
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# ase
|
|
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104
|
# mdanalysis
|
|
105
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+
# pathsimanalysis
|
|
105
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# phonopy
|
|
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# pymatgen
|
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# seaborn
|
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# solvation-analysis
|
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# via mdanalysis
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-
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+
mdahole2==0.5.0
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# via mdanalysis
|
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mdanalysis==2.8.0
|
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# via
|
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# emmet-builders (setup.py)
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# emmet-core
|
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# mdahole2
|
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+
# pathsimanalysis
|
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# solvation-analysis
|
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+
# waterdynamics
|
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mmtf-python==1.1.3
|
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# via mdanalysis
|
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mongomock==4.
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mongomock==4.3.0
|
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# via maggma
|
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monty==2024.10
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+
monty==2024.12.10
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# via
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# emmet-core
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# maggma
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|
@@ -127,7 +133,7 @@ monty==2024.10.21
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# robocrys
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# via inflect
|
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mp-api==0.
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mp-api==0.43.0
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# via robocrys
|
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mp-pyrho==0.4.5
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# via pymatgen-analysis-defects
|
|
@@ -160,6 +166,7 @@ numpy==1.26.4
|
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# mrcfile
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# pandas
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# pathsimanalysis
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# patsy
|
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# phonopy
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# pymatgen
|
|
@@ -178,7 +185,8 @@ numpy==1.26.4
|
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# symfc
|
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# tifffile
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+
# waterdynamics
|
|
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+
orjson==3.10.12
|
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# via maggma
|
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packaging==24.2
|
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|
# via
|
|
@@ -202,9 +210,11 @@ pandas==2.2.3
|
|
|
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# statsmodels
|
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paramiko==3.5.0
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# via sshtunnel
|
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-
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+
pathsimanalysis==1.2.0
|
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+
# via mdanalysis
|
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+
patsy==1.0.1
|
|
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# via statsmodels
|
|
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|
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phonopy==2.
|
|
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|
+
phonopy==2.32.0
|
|
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|
# via matcalc
|
|
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|
pillow==11.0.0
|
|
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|
# via
|
|
@@ -227,12 +237,12 @@ pybtex==0.24.0
|
|
|
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|
# robocrys
|
|
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238
|
pycparser==2.22
|
|
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|
# via cffi
|
|
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|
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pydantic==2.
|
|
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|
+
pydantic==2.10.3
|
|
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241
|
# via
|
|
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|
# emmet-core
|
|
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|
# maggma
|
|
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|
# pydantic-settings
|
|
235
|
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pydantic-core==2.
|
|
245
|
+
pydantic-core==2.27.1
|
|
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|
# via pydantic
|
|
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|
pydantic-settings==2.6.1
|
|
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|
# via
|
|
@@ -240,7 +250,7 @@ pydantic-settings==2.6.1
|
|
|
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|
# maggma
|
|
241
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pydash==8.0.4
|
|
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|
# via maggma
|
|
243
|
-
pymatgen==2024.
|
|
253
|
+
pymatgen==2024.11.13
|
|
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|
# via
|
|
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|
# emmet-core
|
|
246
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|
# matcalc
|
|
@@ -265,7 +275,7 @@ pynacl==1.5.0
|
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|
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# via paramiko
|
|
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|
pyparsing==3.2.0
|
|
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|
# via matplotlib
|
|
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|
-
pytest==8.3.
|
|
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|
+
pytest==8.3.4
|
|
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|
# via solvation-analysis
|
|
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|
python-dateutil==2.9.0.post0
|
|
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|
# via
|
|
@@ -298,7 +308,7 @@ requests==2.32.3
|
|
|
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|
# pymatgen
|
|
299
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|
robocrys==0.2.10
|
|
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|
# via emmet-core
|
|
301
|
-
rpds-py==0.
|
|
311
|
+
rpds-py==0.22.3
|
|
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|
# via
|
|
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|
# jsonschema
|
|
304
314
|
# referencing
|
|
@@ -310,18 +320,18 @@ ruamel-yaml==0.18.6
|
|
|
310
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|
# robocrys
|
|
311
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|
ruamel-yaml-clib==0.2.12
|
|
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|
# via ruamel-yaml
|
|
313
|
-
s3transfer==0.10.
|
|
323
|
+
s3transfer==0.10.4
|
|
314
324
|
# via boto3
|
|
315
325
|
scikit-image==0.24.0
|
|
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326
|
# via pymatgen-analysis-defects
|
|
317
|
-
scikit-learn==1.
|
|
327
|
+
scikit-learn==1.6.0
|
|
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328
|
# via matminer
|
|
319
329
|
scipy==1.14.1
|
|
320
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|
# via
|
|
321
331
|
# ase
|
|
322
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|
# griddataformats
|
|
323
333
|
# mdanalysis
|
|
324
|
-
#
|
|
334
|
+
# pathsimanalysis
|
|
325
335
|
# pymatgen
|
|
326
336
|
# robocrys
|
|
327
337
|
# scikit-image
|
|
@@ -337,9 +347,8 @@ sentinels==1.0.0
|
|
|
337
347
|
# via mongomock
|
|
338
348
|
shapely==2.0.6
|
|
339
349
|
# via pymatgen-analysis-alloys
|
|
340
|
-
six==1.
|
|
350
|
+
six==1.17.0
|
|
341
351
|
# via
|
|
342
|
-
# patsy
|
|
343
352
|
# pybtex
|
|
344
353
|
# python-dateutil
|
|
345
354
|
smart-open==7.0.5
|
|
@@ -359,7 +368,7 @@ sshtunnel==0.4.0
|
|
|
359
368
|
# via maggma
|
|
360
369
|
statsmodels==0.14.4
|
|
361
370
|
# via solvation-analysis
|
|
362
|
-
symfc==1.1.
|
|
371
|
+
symfc==1.1.6
|
|
363
372
|
# via phonopy
|
|
364
373
|
sympy==1.13.3
|
|
365
374
|
# via
|
|
@@ -375,9 +384,9 @@ threadpoolctl==3.5.0
|
|
|
375
384
|
# scikit-learn
|
|
376
385
|
tifffile==2024.9.20
|
|
377
386
|
# via scikit-image
|
|
378
|
-
tomli==2.
|
|
387
|
+
tomli==2.2.1
|
|
379
388
|
# via pytest
|
|
380
|
-
tqdm==4.67.
|
|
389
|
+
tqdm==4.67.1
|
|
381
390
|
# via
|
|
382
391
|
# maggma
|
|
383
392
|
# matminer
|
|
@@ -401,7 +410,9 @@ urllib3==2.2.3
|
|
|
401
410
|
# via
|
|
402
411
|
# botocore
|
|
403
412
|
# requests
|
|
404
|
-
|
|
413
|
+
waterdynamics==1.2.0
|
|
414
|
+
# via mdanalysis
|
|
415
|
+
wrapt==1.17.0
|
|
405
416
|
# via smart-open
|
|
406
417
|
|
|
407
418
|
# The following packages are considered to be unsafe in a requirements file:
|
{emmet-builders-0.84.3rc4 → emmet_builders-0.84.4}/requirements/ubuntu-latest_py3.10_extras.txt
RENAMED
|
@@ -4,9 +4,9 @@
|
|
|
4
4
|
#
|
|
5
5
|
# pip-compile --all-extras --output-file=requirements/ubuntu-latest_py3.10_extras.txt
|
|
6
6
|
#
|
|
7
|
-
aiohappyeyeballs==2.4.
|
|
7
|
+
aiohappyeyeballs==2.4.4
|
|
8
8
|
# via aiohttp
|
|
9
|
-
aiohttp==3.
|
|
9
|
+
aiohttp==3.11.10
|
|
10
10
|
# via fsspec
|
|
11
11
|
aioitertools==0.12.0
|
|
12
12
|
# via maggma
|
|
@@ -20,7 +20,7 @@ ase==3.23.0
|
|
|
20
20
|
# matcalc
|
|
21
21
|
# matgl
|
|
22
22
|
# pymatgen-analysis-diffusion
|
|
23
|
-
async-timeout==
|
|
23
|
+
async-timeout==5.0.1
|
|
24
24
|
# via aiohttp
|
|
25
25
|
attrs==24.2.0
|
|
26
26
|
# via
|
|
@@ -28,11 +28,11 @@ attrs==24.2.0
|
|
|
28
28
|
# jsonlines
|
|
29
29
|
# jsonschema
|
|
30
30
|
# referencing
|
|
31
|
-
bcrypt==4.2.
|
|
31
|
+
bcrypt==4.2.1
|
|
32
32
|
# via paramiko
|
|
33
|
-
boto3==1.35.
|
|
33
|
+
boto3==1.35.78
|
|
34
34
|
# via maggma
|
|
35
|
-
botocore==1.35.
|
|
35
|
+
botocore==1.35.78
|
|
36
36
|
# via
|
|
37
37
|
# boto3
|
|
38
38
|
# s3transfer
|
|
@@ -56,11 +56,11 @@ click==8.1.7
|
|
|
56
56
|
# mkdocstrings
|
|
57
57
|
colorama==0.4.6
|
|
58
58
|
# via griffe
|
|
59
|
-
contourpy==1.3.
|
|
59
|
+
contourpy==1.3.1
|
|
60
60
|
# via matplotlib
|
|
61
|
-
coverage[toml]==7.6.
|
|
61
|
+
coverage[toml]==7.6.9
|
|
62
62
|
# via pytest-cov
|
|
63
|
-
cryptography==
|
|
63
|
+
cryptography==44.0.0
|
|
64
64
|
# via paramiko
|
|
65
65
|
csscompressor==0.9.5
|
|
66
66
|
# via mkdocs-minify-plugin
|
|
@@ -93,7 +93,7 @@ filelock==3.16.1
|
|
|
93
93
|
# virtualenv
|
|
94
94
|
flake8==7.1.1
|
|
95
95
|
# via emmet-builders (setup.py)
|
|
96
|
-
fonttools==4.
|
|
96
|
+
fonttools==4.55.3
|
|
97
97
|
# via matplotlib
|
|
98
98
|
frozenlist==1.5.0
|
|
99
99
|
# via
|
|
@@ -114,13 +114,13 @@ h5py==3.12.1
|
|
|
114
114
|
# via phonopy
|
|
115
115
|
htmlmin2==0.1.13
|
|
116
116
|
# via mkdocs-minify-plugin
|
|
117
|
-
identify==2.6.
|
|
117
|
+
identify==2.6.3
|
|
118
118
|
# via pre-commit
|
|
119
119
|
idna==3.10
|
|
120
120
|
# via
|
|
121
121
|
# requests
|
|
122
122
|
# yarl
|
|
123
|
-
imageio==2.36.
|
|
123
|
+
imageio==2.36.1
|
|
124
124
|
# via scikit-image
|
|
125
125
|
inflect==7.4.0
|
|
126
126
|
# via robocrys
|
|
@@ -160,7 +160,7 @@ lazy-loader==0.4
|
|
|
160
160
|
# via scikit-image
|
|
161
161
|
lightning==2.4.0
|
|
162
162
|
# via matgl
|
|
163
|
-
lightning-utilities==0.11.
|
|
163
|
+
lightning-utilities==0.11.9
|
|
164
164
|
# via
|
|
165
165
|
# lightning
|
|
166
166
|
# pytorch-lightning
|
|
@@ -192,10 +192,11 @@ matminer==0.9.3
|
|
|
192
192
|
# via
|
|
193
193
|
# emmet-builders (setup.py)
|
|
194
194
|
# robocrys
|
|
195
|
-
matplotlib==3.9.
|
|
195
|
+
matplotlib==3.9.3
|
|
196
196
|
# via
|
|
197
197
|
# ase
|
|
198
198
|
# mdanalysis
|
|
199
|
+
# pathsimanalysis
|
|
199
200
|
# phonopy
|
|
200
201
|
# pymatgen
|
|
201
202
|
# seaborn
|
|
@@ -204,12 +205,17 @@ mccabe==0.7.0
|
|
|
204
205
|
# via flake8
|
|
205
206
|
mda-xdrlib==0.2.0
|
|
206
207
|
# via mdanalysis
|
|
207
|
-
|
|
208
|
+
mdahole2==0.5.0
|
|
209
|
+
# via mdanalysis
|
|
210
|
+
mdanalysis==2.8.0
|
|
208
211
|
# via
|
|
209
212
|
# emmet-builders (setup.py)
|
|
210
213
|
# emmet-core
|
|
214
|
+
# mdahole2
|
|
215
|
+
# pathsimanalysis
|
|
211
216
|
# solvation-analysis
|
|
212
217
|
# transport-analysis
|
|
218
|
+
# waterdynamics
|
|
213
219
|
mergedeep==1.3.4
|
|
214
220
|
# via
|
|
215
221
|
# mkdocs
|
|
@@ -249,9 +255,9 @@ mkdocstrings-python==1.12.2
|
|
|
249
255
|
# via mkdocstrings
|
|
250
256
|
mmtf-python==1.1.3
|
|
251
257
|
# via mdanalysis
|
|
252
|
-
mongomock==4.
|
|
258
|
+
mongomock==4.3.0
|
|
253
259
|
# via maggma
|
|
254
|
-
monty==2024.10
|
|
260
|
+
monty==2024.12.10
|
|
255
261
|
# via
|
|
256
262
|
# emmet-core
|
|
257
263
|
# maggma
|
|
@@ -261,7 +267,7 @@ monty==2024.10.21
|
|
|
261
267
|
# robocrys
|
|
262
268
|
more-itertools==10.5.0
|
|
263
269
|
# via inflect
|
|
264
|
-
mp-api==0.
|
|
270
|
+
mp-api==0.43.0
|
|
265
271
|
# via robocrys
|
|
266
272
|
mp-pyrho==0.4.5
|
|
267
273
|
# via pymatgen-analysis-defects
|
|
@@ -312,6 +318,7 @@ numpy==1.26.4
|
|
|
312
318
|
# monty
|
|
313
319
|
# mrcfile
|
|
314
320
|
# pandas
|
|
321
|
+
# pathsimanalysis
|
|
315
322
|
# patsy
|
|
316
323
|
# phonopy
|
|
317
324
|
# pymatgen
|
|
@@ -332,6 +339,7 @@ numpy==1.26.4
|
|
|
332
339
|
# tidynamics
|
|
333
340
|
# tifffile
|
|
334
341
|
# torchmetrics
|
|
342
|
+
# waterdynamics
|
|
335
343
|
nvidia-cublas-cu12==12.4.5.8
|
|
336
344
|
# via
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337
345
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# nvidia-cudnn-cu12
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@@ -366,7 +374,7 @@ nvidia-nvjitlink-cu12==12.4.127
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366
374
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# torch
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367
375
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nvidia-nvtx-cu12==12.4.127
|
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368
376
|
# via torch
|
|
369
|
-
orjson==3.10.
|
|
377
|
+
orjson==3.10.12
|
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370
378
|
# via maggma
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|
371
379
|
packaging==24.2
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|
372
380
|
# via
|
|
@@ -395,11 +403,13 @@ pandas==2.2.3
|
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395
403
|
# statsmodels
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396
404
|
paramiko==3.5.0
|
|
397
405
|
# via sshtunnel
|
|
406
|
+
pathsimanalysis==1.2.0
|
|
407
|
+
# via mdanalysis
|
|
398
408
|
pathspec==0.12.1
|
|
399
409
|
# via mkdocs
|
|
400
|
-
patsy==0.
|
|
410
|
+
patsy==1.0.1
|
|
401
411
|
# via statsmodels
|
|
402
|
-
phonopy==2.
|
|
412
|
+
phonopy==2.32.0
|
|
403
413
|
# via matcalc
|
|
404
414
|
pillow==11.0.0
|
|
405
415
|
# via
|
|
@@ -420,8 +430,10 @@ pluggy==1.5.0
|
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|
420
430
|
# via pytest
|
|
421
431
|
pre-commit==4.0.1
|
|
422
432
|
# via emmet-builders (setup.py)
|
|
423
|
-
propcache==0.2.
|
|
424
|
-
# via
|
|
433
|
+
propcache==0.2.1
|
|
434
|
+
# via
|
|
435
|
+
# aiohttp
|
|
436
|
+
# yarl
|
|
425
437
|
psutil==6.1.0
|
|
426
438
|
# via dgl
|
|
427
439
|
pubchempy==1.0.4
|
|
@@ -437,13 +449,13 @@ pycodestyle==2.12.1
|
|
|
437
449
|
# flake8
|
|
438
450
|
pycparser==2.22
|
|
439
451
|
# via cffi
|
|
440
|
-
pydantic==2.
|
|
452
|
+
pydantic==2.10.3
|
|
441
453
|
# via
|
|
442
454
|
# emmet-core
|
|
443
455
|
# maggma
|
|
444
456
|
# matgl
|
|
445
457
|
# pydantic-settings
|
|
446
|
-
pydantic-core==2.
|
|
458
|
+
pydantic-core==2.27.1
|
|
447
459
|
# via pydantic
|
|
448
460
|
pydantic-settings==2.6.1
|
|
449
461
|
# via
|
|
@@ -457,7 +469,7 @@ pyflakes==3.2.0
|
|
|
457
469
|
# via flake8
|
|
458
470
|
pygments==2.18.0
|
|
459
471
|
# via mkdocs-material
|
|
460
|
-
pymatgen==2024.
|
|
472
|
+
pymatgen==2024.11.13
|
|
461
473
|
# via
|
|
462
474
|
# chgnet
|
|
463
475
|
# emmet-core
|
|
@@ -488,7 +500,7 @@ pynacl==1.5.0
|
|
|
488
500
|
# via paramiko
|
|
489
501
|
pyparsing==3.2.0
|
|
490
502
|
# via matplotlib
|
|
491
|
-
pytest==8.3.
|
|
503
|
+
pytest==8.3.4
|
|
492
504
|
# via
|
|
493
505
|
# emmet-builders (setup.py)
|
|
494
506
|
# pytest-cov
|
|
@@ -541,7 +553,7 @@ requests==2.32.3
|
|
|
541
553
|
# torchdata
|
|
542
554
|
robocrys==0.2.10
|
|
543
555
|
# via emmet-core
|
|
544
|
-
rpds-py==0.
|
|
556
|
+
rpds-py==0.22.3
|
|
545
557
|
# via
|
|
546
558
|
# jsonschema
|
|
547
559
|
# referencing
|
|
@@ -553,11 +565,11 @@ ruamel-yaml==0.18.6
|
|
|
553
565
|
# robocrys
|
|
554
566
|
ruamel-yaml-clib==0.2.12
|
|
555
567
|
# via ruamel-yaml
|
|
556
|
-
s3transfer==0.10.
|
|
568
|
+
s3transfer==0.10.4
|
|
557
569
|
# via boto3
|
|
558
570
|
scikit-image==0.24.0
|
|
559
571
|
# via pymatgen-analysis-defects
|
|
560
|
-
scikit-learn==1.
|
|
572
|
+
scikit-learn==1.6.0
|
|
561
573
|
# via matminer
|
|
562
574
|
scipy==1.14.1
|
|
563
575
|
# via
|
|
@@ -565,7 +577,7 @@ scipy==1.14.1
|
|
|
565
577
|
# dgl
|
|
566
578
|
# griddataformats
|
|
567
579
|
# mdanalysis
|
|
568
|
-
#
|
|
580
|
+
# pathsimanalysis
|
|
569
581
|
# pymatgen
|
|
570
582
|
# robocrys
|
|
571
583
|
# scikit-image
|
|
@@ -581,9 +593,8 @@ sentinels==1.0.0
|
|
|
581
593
|
# via mongomock
|
|
582
594
|
shapely==2.0.6
|
|
583
595
|
# via pymatgen-analysis-alloys
|
|
584
|
-
six==1.
|
|
596
|
+
six==1.17.0
|
|
585
597
|
# via
|
|
586
|
-
# patsy
|
|
587
598
|
# pybtex
|
|
588
599
|
# python-dateutil
|
|
589
600
|
smart-open==7.0.5
|
|
@@ -605,7 +616,7 @@ sshtunnel==0.4.0
|
|
|
605
616
|
# via maggma
|
|
606
617
|
statsmodels==0.14.4
|
|
607
618
|
# via solvation-analysis
|
|
608
|
-
symfc==1.1.
|
|
619
|
+
symfc==1.1.6
|
|
609
620
|
# via phonopy
|
|
610
621
|
sympy==1.13.1
|
|
611
622
|
# via
|
|
@@ -624,7 +635,7 @@ tidynamics==1.1.2
|
|
|
624
635
|
# via transport-analysis
|
|
625
636
|
tifffile==2024.9.20
|
|
626
637
|
# via scikit-image
|
|
627
|
-
tomli==2.
|
|
638
|
+
tomli==2.2.1
|
|
628
639
|
# via
|
|
629
640
|
# coverage
|
|
630
641
|
# mypy
|
|
@@ -641,13 +652,13 @@ torchdata==0.7.1
|
|
|
641
652
|
# via
|
|
642
653
|
# dgl
|
|
643
654
|
# matgl
|
|
644
|
-
torchmetrics==1.
|
|
655
|
+
torchmetrics==1.6.0
|
|
645
656
|
# via
|
|
646
657
|
# lightning
|
|
647
658
|
# pytorch-lightning
|
|
648
|
-
tornado==6.4.
|
|
659
|
+
tornado==6.4.2
|
|
649
660
|
# via livereload
|
|
650
|
-
tqdm==4.67.
|
|
661
|
+
tqdm==4.67.1
|
|
651
662
|
# via
|
|
652
663
|
# dgl
|
|
653
664
|
# lightning
|
|
@@ -664,7 +675,7 @@ typeguard==4.4.1
|
|
|
664
675
|
# via inflect
|
|
665
676
|
types-requests==2.32.0.20241016
|
|
666
677
|
# via emmet-builders (setup.py)
|
|
667
|
-
types-setuptools==75.
|
|
678
|
+
types-setuptools==75.6.0.20241126
|
|
668
679
|
# via emmet-builders (setup.py)
|
|
669
680
|
typing-extensions==4.12.2
|
|
670
681
|
# via
|
|
@@ -691,17 +702,19 @@ urllib3==2.2.3
|
|
|
691
702
|
# requests
|
|
692
703
|
# torchdata
|
|
693
704
|
# types-requests
|
|
694
|
-
virtualenv==20.
|
|
705
|
+
virtualenv==20.28.0
|
|
695
706
|
# via pre-commit
|
|
696
707
|
watchdog==6.0.0
|
|
697
708
|
# via mkdocs
|
|
709
|
+
waterdynamics==1.2.0
|
|
710
|
+
# via mdanalysis
|
|
698
711
|
wcmatch==10.0
|
|
699
712
|
# via mkdocs-awesome-pages-plugin
|
|
700
713
|
wincertstore==0.2.1
|
|
701
714
|
# via emmet-builders (setup.py)
|
|
702
|
-
wrapt==1.
|
|
715
|
+
wrapt==1.17.0
|
|
703
716
|
# via smart-open
|
|
704
|
-
yarl==1.
|
|
717
|
+
yarl==1.18.3
|
|
705
718
|
# via aiohttp
|
|
706
719
|
|
|
707
720
|
# The following packages are considered to be unsafe in a requirements file:
|