emmet-builders 0.84.3rc4__tar.gz → 0.84.3rc6__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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- emmet_builders-0.84.3rc6/PKG-INFO +49 -0
- emmet_builders-0.84.3rc6/emmet_builders.egg-info/PKG-INFO +49 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/requirements/ubuntu-latest_py3.10.txt +37 -25
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/requirements/ubuntu-latest_py3.10_extras.txt +52 -38
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/requirements/ubuntu-latest_py3.11.txt +36 -24
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/requirements/ubuntu-latest_py3.11_extras.txt +50 -36
- emmet-builders-0.84.3rc4/PKG-INFO +0 -24
- emmet-builders-0.84.3rc4/emmet_builders.egg-info/PKG-INFO +0 -24
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/MANIFEST.in +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/__init__.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/abinit/__init__.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/abinit/phonon.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/abinit/sound_velocity.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/feff/__init__.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/feff/xas.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/__init__.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/absorption_spectrum.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/alloys.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/basic_descriptors.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/bonds.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/chemenv.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/corrected_entries.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/dielectric.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/elasticity.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/electrodes.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/electronic_structure.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/magnetism.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/ml.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/optimade.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/oxidation_states.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/piezoelectric.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/provenance.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/robocrys.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/similarity.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/substrates.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/summary.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/materials/thermo.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/matscholar/missing_compositions.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/mobility/__init__.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/mobility/migration_graph.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/molecules/__init__.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/molecules/atomic.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/molecules/bonds.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/molecules/electric.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/molecules/metal_binding.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/molecules/orbitals.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/molecules/redox.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/molecules/summary.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/molecules/thermo.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/molecules/trajectory.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/molecules/vibration.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/qchem/__init__.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/qchem/molecules.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/settings.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/utils.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/vasp/__init__.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/vasp/materials.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/vasp/mp_potcar_stats.json.gz +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet/builders/vasp/task_validator.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet_builders.egg-info/SOURCES.txt +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet_builders.egg-info/dependency_links.txt +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet_builders.egg-info/not-zip-safe +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet_builders.egg-info/requires.txt +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/emmet_builders.egg-info/top_level.txt +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/requirements/deployment.txt +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/setup.cfg +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/setup.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/__init__.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/conftest.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/molecules/__init__.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/molecules/test_atomic.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/molecules/test_bonds.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/molecules/test_electric.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/molecules/test_metal_binding.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/molecules/test_orbitals.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/molecules/test_redox.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/molecules/test_summary.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/molecules/test_thermo.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/molecules/test_trajectory.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/molecules/test_vibration.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/test_absorption.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/test_basic_descriptors.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/test_chemenv.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/test_corrected_entries_thermo.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/test_dielectric.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/test_elasticity.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/test_electronic_structure.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/test_magnetism.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/test_materials.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/test_ml.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/test_mobility.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/test_oxidation.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/test_piezoelectric.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/test_qchem.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/test_similarity.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/test_summary.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/test_utils.py +0 -0
- {emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/tests/test_vasp.py +0 -0
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Metadata-Version: 2.1
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Name: emmet-builders
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Version: 0.84.3rc6
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Summary: Builders for the Emmet Library
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Home-page: https://github.com/materialsproject/emmet
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Author: The Materials Project
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License: modified BSD
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Requires-Python: >=3.9
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Description-Content-Type: text/markdown
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Requires-Dist: emmet-core[all]
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# 
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[](https://github.com/materialsproject/emmet/actions?query=workflow%3Atesting)
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[](https://codecov.io/gh/materialsproject/emmet)
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The Materials API Toolkit for the Materials Project. Emmet defines the core models, data pipelines, the API server, and the convenience CLI.
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Name: emmet-builders
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Version: 0.84.3rc6
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Summary: Builders for the Emmet Library
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Author: The Materials Project
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# 
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[](https://github.com/materialsproject/emmet/actions?query=workflow%3Atesting)
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[](https://codecov.io/gh/materialsproject/emmet)
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The Materials API Toolkit for the Materials Project. Emmet defines the core models, data pipelines, the API server, and the convenience CLI.
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# jsonlines
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# jsonschema
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# referencing
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bcrypt==4.2.
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bcrypt==4.2.1
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# via paramiko
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# via
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# pynacl
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# via requests
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# via matplotlib
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# via paramiko
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# via matplotlib
|
|
@@ -51,7 +51,7 @@ exceptiongroup==1.2.2
|
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# via pytest
|
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52
52
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fasteners==0.19
|
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53
53
|
# via mdanalysis
|
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54
|
-
fonttools==4.
|
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+
fonttools==4.55.1
|
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55
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# via matplotlib
|
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56
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griddataformats==1.0.2
|
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57
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# via mdanalysis
|
|
@@ -59,7 +59,7 @@ h5py==3.12.1
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# via phonopy
|
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idna==3.10
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# via requests
|
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imageio==2.36.
|
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+
imageio==2.36.1
|
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# via scikit-image
|
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inflect==7.4.0
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65
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# via robocrys
|
|
@@ -98,24 +98,30 @@ matminer==0.9.3
|
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# via
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# emmet-builders (setup.py)
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# robocrys
|
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matplotlib==3.9.
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+
matplotlib==3.9.3
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# via
|
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# ase
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# mdanalysis
|
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+
# pathsimanalysis
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# phonopy
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# pymatgen
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# seaborn
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# solvation-analysis
|
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mda-xdrlib==0.2.0
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# via mdanalysis
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-
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+
mdahole2==0.5.0
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# via mdanalysis
|
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+
mdanalysis==2.8.0
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# via
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# emmet-builders (setup.py)
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# emmet-core
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# mdahole2
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+
# pathsimanalysis
|
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# solvation-analysis
|
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+
# waterdynamics
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mmtf-python==1.1.3
|
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# via mdanalysis
|
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-
mongomock==4.
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+
mongomock==4.3.0
|
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# via maggma
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monty==2024.10.21
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# via
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|
@@ -127,7 +133,7 @@ monty==2024.10.21
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# via inflect
|
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mp-api==0.
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mp-api==0.43.0
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# via robocrys
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mp-pyrho==0.4.5
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# via pymatgen-analysis-defects
|
|
@@ -160,6 +166,7 @@ numpy==1.26.4
|
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# monty
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# mrcfile
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# pandas
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# pathsimanalysis
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# patsy
|
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# phonopy
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# pymatgen
|
|
@@ -178,7 +185,8 @@ numpy==1.26.4
|
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# symfc
|
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# tifffile
|
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-
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+
# waterdynamics
|
|
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+
orjson==3.10.12
|
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|
# via maggma
|
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packaging==24.2
|
|
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# via
|
|
@@ -202,9 +210,11 @@ pandas==2.2.3
|
|
|
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# statsmodels
|
|
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paramiko==3.5.0
|
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# via sshtunnel
|
|
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-
|
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|
+
pathsimanalysis==1.2.0
|
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+
# via mdanalysis
|
|
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+
patsy==1.0.1
|
|
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# via statsmodels
|
|
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|
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phonopy==2.
|
|
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|
+
phonopy==2.31.2
|
|
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|
# via matcalc
|
|
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|
pillow==11.0.0
|
|
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# via
|
|
@@ -227,12 +237,12 @@ pybtex==0.24.0
|
|
|
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|
# robocrys
|
|
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238
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pycparser==2.22
|
|
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|
# via cffi
|
|
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|
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pydantic==2.
|
|
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|
+
pydantic==2.10.3
|
|
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|
# via
|
|
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|
# emmet-core
|
|
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|
# maggma
|
|
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|
# pydantic-settings
|
|
235
|
-
pydantic-core==2.
|
|
245
|
+
pydantic-core==2.27.1
|
|
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|
# via pydantic
|
|
237
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|
pydantic-settings==2.6.1
|
|
238
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|
# via
|
|
@@ -240,7 +250,7 @@ pydantic-settings==2.6.1
|
|
|
240
250
|
# maggma
|
|
241
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|
pydash==8.0.4
|
|
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|
# via maggma
|
|
243
|
-
pymatgen==2024.
|
|
253
|
+
pymatgen==2024.11.13
|
|
244
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|
# via
|
|
245
255
|
# emmet-core
|
|
246
256
|
# matcalc
|
|
@@ -265,7 +275,7 @@ pynacl==1.5.0
|
|
|
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# via paramiko
|
|
266
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|
pyparsing==3.2.0
|
|
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|
# via matplotlib
|
|
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|
-
pytest==8.3.
|
|
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|
+
pytest==8.3.4
|
|
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|
# via solvation-analysis
|
|
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|
python-dateutil==2.9.0.post0
|
|
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|
# via
|
|
@@ -298,7 +308,7 @@ requests==2.32.3
|
|
|
298
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|
# pymatgen
|
|
299
309
|
robocrys==0.2.10
|
|
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|
# via emmet-core
|
|
301
|
-
rpds-py==0.
|
|
311
|
+
rpds-py==0.22.1
|
|
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|
# via
|
|
303
313
|
# jsonschema
|
|
304
314
|
# referencing
|
|
@@ -310,7 +320,7 @@ ruamel-yaml==0.18.6
|
|
|
310
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|
# robocrys
|
|
311
321
|
ruamel-yaml-clib==0.2.12
|
|
312
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|
# via ruamel-yaml
|
|
313
|
-
s3transfer==0.10.
|
|
323
|
+
s3transfer==0.10.4
|
|
314
324
|
# via boto3
|
|
315
325
|
scikit-image==0.24.0
|
|
316
326
|
# via pymatgen-analysis-defects
|
|
@@ -321,6 +331,7 @@ scipy==1.14.1
|
|
|
321
331
|
# ase
|
|
322
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|
# griddataformats
|
|
323
333
|
# mdanalysis
|
|
334
|
+
# pathsimanalysis
|
|
324
335
|
# phonopy
|
|
325
336
|
# pymatgen
|
|
326
337
|
# robocrys
|
|
@@ -339,7 +350,6 @@ shapely==2.0.6
|
|
|
339
350
|
# via pymatgen-analysis-alloys
|
|
340
351
|
six==1.16.0
|
|
341
352
|
# via
|
|
342
|
-
# patsy
|
|
343
353
|
# pybtex
|
|
344
354
|
# python-dateutil
|
|
345
355
|
smart-open==7.0.5
|
|
@@ -359,7 +369,7 @@ sshtunnel==0.4.0
|
|
|
359
369
|
# via maggma
|
|
360
370
|
statsmodels==0.14.4
|
|
361
371
|
# via solvation-analysis
|
|
362
|
-
symfc==1.1.
|
|
372
|
+
symfc==1.1.6
|
|
363
373
|
# via phonopy
|
|
364
374
|
sympy==1.13.3
|
|
365
375
|
# via
|
|
@@ -375,9 +385,9 @@ threadpoolctl==3.5.0
|
|
|
375
385
|
# scikit-learn
|
|
376
386
|
tifffile==2024.9.20
|
|
377
387
|
# via scikit-image
|
|
378
|
-
tomli==2.
|
|
388
|
+
tomli==2.2.1
|
|
379
389
|
# via pytest
|
|
380
|
-
tqdm==4.67.
|
|
390
|
+
tqdm==4.67.1
|
|
381
391
|
# via
|
|
382
392
|
# maggma
|
|
383
393
|
# matminer
|
|
@@ -401,7 +411,9 @@ urllib3==2.2.3
|
|
|
401
411
|
# via
|
|
402
412
|
# botocore
|
|
403
413
|
# requests
|
|
404
|
-
|
|
414
|
+
waterdynamics==1.2.0
|
|
415
|
+
# via mdanalysis
|
|
416
|
+
wrapt==1.17.0
|
|
405
417
|
# via smart-open
|
|
406
418
|
|
|
407
419
|
# The following packages are considered to be unsafe in a requirements file:
|
{emmet-builders-0.84.3rc4 → emmet_builders-0.84.3rc6}/requirements/ubuntu-latest_py3.10_extras.txt
RENAMED
|
@@ -4,9 +4,9 @@
|
|
|
4
4
|
#
|
|
5
5
|
# pip-compile --all-extras --output-file=requirements/ubuntu-latest_py3.10_extras.txt
|
|
6
6
|
#
|
|
7
|
-
aiohappyeyeballs==2.4.
|
|
7
|
+
aiohappyeyeballs==2.4.4
|
|
8
8
|
# via aiohttp
|
|
9
|
-
aiohttp==3.
|
|
9
|
+
aiohttp==3.11.9
|
|
10
10
|
# via fsspec
|
|
11
11
|
aioitertools==0.12.0
|
|
12
12
|
# via maggma
|
|
@@ -20,7 +20,7 @@ ase==3.23.0
|
|
|
20
20
|
# matcalc
|
|
21
21
|
# matgl
|
|
22
22
|
# pymatgen-analysis-diffusion
|
|
23
|
-
async-timeout==
|
|
23
|
+
async-timeout==5.0.1
|
|
24
24
|
# via aiohttp
|
|
25
25
|
attrs==24.2.0
|
|
26
26
|
# via
|
|
@@ -28,11 +28,11 @@ attrs==24.2.0
|
|
|
28
28
|
# jsonlines
|
|
29
29
|
# jsonschema
|
|
30
30
|
# referencing
|
|
31
|
-
bcrypt==4.2.
|
|
31
|
+
bcrypt==4.2.1
|
|
32
32
|
# via paramiko
|
|
33
|
-
boto3==1.35.
|
|
33
|
+
boto3==1.35.73
|
|
34
34
|
# via maggma
|
|
35
|
-
botocore==1.35.
|
|
35
|
+
botocore==1.35.73
|
|
36
36
|
# via
|
|
37
37
|
# boto3
|
|
38
38
|
# s3transfer
|
|
@@ -56,11 +56,11 @@ click==8.1.7
|
|
|
56
56
|
# mkdocstrings
|
|
57
57
|
colorama==0.4.6
|
|
58
58
|
# via griffe
|
|
59
|
-
contourpy==1.3.
|
|
59
|
+
contourpy==1.3.1
|
|
60
60
|
# via matplotlib
|
|
61
|
-
coverage[toml]==7.6.
|
|
61
|
+
coverage[toml]==7.6.8
|
|
62
62
|
# via pytest-cov
|
|
63
|
-
cryptography==
|
|
63
|
+
cryptography==44.0.0
|
|
64
64
|
# via paramiko
|
|
65
65
|
csscompressor==0.9.5
|
|
66
66
|
# via mkdocs-minify-plugin
|
|
@@ -93,7 +93,7 @@ filelock==3.16.1
|
|
|
93
93
|
# virtualenv
|
|
94
94
|
flake8==7.1.1
|
|
95
95
|
# via emmet-builders (setup.py)
|
|
96
|
-
fonttools==4.
|
|
96
|
+
fonttools==4.55.1
|
|
97
97
|
# via matplotlib
|
|
98
98
|
frozenlist==1.5.0
|
|
99
99
|
# via
|
|
@@ -114,13 +114,13 @@ h5py==3.12.1
|
|
|
114
114
|
# via phonopy
|
|
115
115
|
htmlmin2==0.1.13
|
|
116
116
|
# via mkdocs-minify-plugin
|
|
117
|
-
identify==2.6.
|
|
117
|
+
identify==2.6.3
|
|
118
118
|
# via pre-commit
|
|
119
119
|
idna==3.10
|
|
120
120
|
# via
|
|
121
121
|
# requests
|
|
122
122
|
# yarl
|
|
123
|
-
imageio==2.36.
|
|
123
|
+
imageio==2.36.1
|
|
124
124
|
# via scikit-image
|
|
125
125
|
inflect==7.4.0
|
|
126
126
|
# via robocrys
|
|
@@ -160,7 +160,7 @@ lazy-loader==0.4
|
|
|
160
160
|
# via scikit-image
|
|
161
161
|
lightning==2.4.0
|
|
162
162
|
# via matgl
|
|
163
|
-
lightning-utilities==0.11.
|
|
163
|
+
lightning-utilities==0.11.9
|
|
164
164
|
# via
|
|
165
165
|
# lightning
|
|
166
166
|
# pytorch-lightning
|
|
@@ -192,10 +192,11 @@ matminer==0.9.3
|
|
|
192
192
|
# via
|
|
193
193
|
# emmet-builders (setup.py)
|
|
194
194
|
# robocrys
|
|
195
|
-
matplotlib==3.9.
|
|
195
|
+
matplotlib==3.9.3
|
|
196
196
|
# via
|
|
197
197
|
# ase
|
|
198
198
|
# mdanalysis
|
|
199
|
+
# pathsimanalysis
|
|
199
200
|
# phonopy
|
|
200
201
|
# pymatgen
|
|
201
202
|
# seaborn
|
|
@@ -204,12 +205,17 @@ mccabe==0.7.0
|
|
|
204
205
|
# via flake8
|
|
205
206
|
mda-xdrlib==0.2.0
|
|
206
207
|
# via mdanalysis
|
|
207
|
-
|
|
208
|
+
mdahole2==0.5.0
|
|
209
|
+
# via mdanalysis
|
|
210
|
+
mdanalysis==2.8.0
|
|
208
211
|
# via
|
|
209
212
|
# emmet-builders (setup.py)
|
|
210
213
|
# emmet-core
|
|
214
|
+
# mdahole2
|
|
215
|
+
# pathsimanalysis
|
|
211
216
|
# solvation-analysis
|
|
212
217
|
# transport-analysis
|
|
218
|
+
# waterdynamics
|
|
213
219
|
mergedeep==1.3.4
|
|
214
220
|
# via
|
|
215
221
|
# mkdocs
|
|
@@ -249,7 +255,7 @@ mkdocstrings-python==1.12.2
|
|
|
249
255
|
# via mkdocstrings
|
|
250
256
|
mmtf-python==1.1.3
|
|
251
257
|
# via mdanalysis
|
|
252
|
-
mongomock==4.
|
|
258
|
+
mongomock==4.3.0
|
|
253
259
|
# via maggma
|
|
254
260
|
monty==2024.10.21
|
|
255
261
|
# via
|
|
@@ -261,7 +267,7 @@ monty==2024.10.21
|
|
|
261
267
|
# robocrys
|
|
262
268
|
more-itertools==10.5.0
|
|
263
269
|
# via inflect
|
|
264
|
-
mp-api==0.
|
|
270
|
+
mp-api==0.43.0
|
|
265
271
|
# via robocrys
|
|
266
272
|
mp-pyrho==0.4.5
|
|
267
273
|
# via pymatgen-analysis-defects
|
|
@@ -312,6 +318,7 @@ numpy==1.26.4
|
|
|
312
318
|
# monty
|
|
313
319
|
# mrcfile
|
|
314
320
|
# pandas
|
|
321
|
+
# pathsimanalysis
|
|
315
322
|
# patsy
|
|
316
323
|
# phonopy
|
|
317
324
|
# pymatgen
|
|
@@ -332,6 +339,7 @@ numpy==1.26.4
|
|
|
332
339
|
# tidynamics
|
|
333
340
|
# tifffile
|
|
334
341
|
# torchmetrics
|
|
342
|
+
# waterdynamics
|
|
335
343
|
nvidia-cublas-cu12==12.4.5.8
|
|
336
344
|
# via
|
|
337
345
|
# nvidia-cudnn-cu12
|
|
@@ -366,7 +374,7 @@ nvidia-nvjitlink-cu12==12.4.127
|
|
|
366
374
|
# torch
|
|
367
375
|
nvidia-nvtx-cu12==12.4.127
|
|
368
376
|
# via torch
|
|
369
|
-
orjson==3.10.
|
|
377
|
+
orjson==3.10.12
|
|
370
378
|
# via maggma
|
|
371
379
|
packaging==24.2
|
|
372
380
|
# via
|
|
@@ -395,11 +403,13 @@ pandas==2.2.3
|
|
|
395
403
|
# statsmodels
|
|
396
404
|
paramiko==3.5.0
|
|
397
405
|
# via sshtunnel
|
|
406
|
+
pathsimanalysis==1.2.0
|
|
407
|
+
# via mdanalysis
|
|
398
408
|
pathspec==0.12.1
|
|
399
409
|
# via mkdocs
|
|
400
|
-
patsy==0.
|
|
410
|
+
patsy==1.0.1
|
|
401
411
|
# via statsmodels
|
|
402
|
-
phonopy==2.
|
|
412
|
+
phonopy==2.31.2
|
|
403
413
|
# via matcalc
|
|
404
414
|
pillow==11.0.0
|
|
405
415
|
# via
|
|
@@ -420,8 +430,10 @@ pluggy==1.5.0
|
|
|
420
430
|
# via pytest
|
|
421
431
|
pre-commit==4.0.1
|
|
422
432
|
# via emmet-builders (setup.py)
|
|
423
|
-
propcache==0.2.
|
|
424
|
-
# via
|
|
433
|
+
propcache==0.2.1
|
|
434
|
+
# via
|
|
435
|
+
# aiohttp
|
|
436
|
+
# yarl
|
|
425
437
|
psutil==6.1.0
|
|
426
438
|
# via dgl
|
|
427
439
|
pubchempy==1.0.4
|
|
@@ -437,13 +449,13 @@ pycodestyle==2.12.1
|
|
|
437
449
|
# flake8
|
|
438
450
|
pycparser==2.22
|
|
439
451
|
# via cffi
|
|
440
|
-
pydantic==2.
|
|
452
|
+
pydantic==2.10.3
|
|
441
453
|
# via
|
|
442
454
|
# emmet-core
|
|
443
455
|
# maggma
|
|
444
456
|
# matgl
|
|
445
457
|
# pydantic-settings
|
|
446
|
-
pydantic-core==2.
|
|
458
|
+
pydantic-core==2.27.1
|
|
447
459
|
# via pydantic
|
|
448
460
|
pydantic-settings==2.6.1
|
|
449
461
|
# via
|
|
@@ -457,7 +469,7 @@ pyflakes==3.2.0
|
|
|
457
469
|
# via flake8
|
|
458
470
|
pygments==2.18.0
|
|
459
471
|
# via mkdocs-material
|
|
460
|
-
pymatgen==2024.
|
|
472
|
+
pymatgen==2024.11.13
|
|
461
473
|
# via
|
|
462
474
|
# chgnet
|
|
463
475
|
# emmet-core
|
|
@@ -488,7 +500,7 @@ pynacl==1.5.0
|
|
|
488
500
|
# via paramiko
|
|
489
501
|
pyparsing==3.2.0
|
|
490
502
|
# via matplotlib
|
|
491
|
-
pytest==8.3.
|
|
503
|
+
pytest==8.3.4
|
|
492
504
|
# via
|
|
493
505
|
# emmet-builders (setup.py)
|
|
494
506
|
# pytest-cov
|
|
@@ -541,7 +553,7 @@ requests==2.32.3
|
|
|
541
553
|
# torchdata
|
|
542
554
|
robocrys==0.2.10
|
|
543
555
|
# via emmet-core
|
|
544
|
-
rpds-py==0.
|
|
556
|
+
rpds-py==0.22.1
|
|
545
557
|
# via
|
|
546
558
|
# jsonschema
|
|
547
559
|
# referencing
|
|
@@ -553,7 +565,7 @@ ruamel-yaml==0.18.6
|
|
|
553
565
|
# robocrys
|
|
554
566
|
ruamel-yaml-clib==0.2.12
|
|
555
567
|
# via ruamel-yaml
|
|
556
|
-
s3transfer==0.10.
|
|
568
|
+
s3transfer==0.10.4
|
|
557
569
|
# via boto3
|
|
558
570
|
scikit-image==0.24.0
|
|
559
571
|
# via pymatgen-analysis-defects
|
|
@@ -565,6 +577,7 @@ scipy==1.14.1
|
|
|
565
577
|
# dgl
|
|
566
578
|
# griddataformats
|
|
567
579
|
# mdanalysis
|
|
580
|
+
# pathsimanalysis
|
|
568
581
|
# phonopy
|
|
569
582
|
# pymatgen
|
|
570
583
|
# robocrys
|
|
@@ -583,7 +596,6 @@ shapely==2.0.6
|
|
|
583
596
|
# via pymatgen-analysis-alloys
|
|
584
597
|
six==1.16.0
|
|
585
598
|
# via
|
|
586
|
-
# patsy
|
|
587
599
|
# pybtex
|
|
588
600
|
# python-dateutil
|
|
589
601
|
smart-open==7.0.5
|
|
@@ -605,7 +617,7 @@ sshtunnel==0.4.0
|
|
|
605
617
|
# via maggma
|
|
606
618
|
statsmodels==0.14.4
|
|
607
619
|
# via solvation-analysis
|
|
608
|
-
symfc==1.1.
|
|
620
|
+
symfc==1.1.6
|
|
609
621
|
# via phonopy
|
|
610
622
|
sympy==1.13.1
|
|
611
623
|
# via
|
|
@@ -624,7 +636,7 @@ tidynamics==1.1.2
|
|
|
624
636
|
# via transport-analysis
|
|
625
637
|
tifffile==2024.9.20
|
|
626
638
|
# via scikit-image
|
|
627
|
-
tomli==2.
|
|
639
|
+
tomli==2.2.1
|
|
628
640
|
# via
|
|
629
641
|
# coverage
|
|
630
642
|
# mypy
|
|
@@ -641,13 +653,13 @@ torchdata==0.7.1
|
|
|
641
653
|
# via
|
|
642
654
|
# dgl
|
|
643
655
|
# matgl
|
|
644
|
-
torchmetrics==1.
|
|
656
|
+
torchmetrics==1.6.0
|
|
645
657
|
# via
|
|
646
658
|
# lightning
|
|
647
659
|
# pytorch-lightning
|
|
648
|
-
tornado==6.4.
|
|
660
|
+
tornado==6.4.2
|
|
649
661
|
# via livereload
|
|
650
|
-
tqdm==4.67.
|
|
662
|
+
tqdm==4.67.1
|
|
651
663
|
# via
|
|
652
664
|
# dgl
|
|
653
665
|
# lightning
|
|
@@ -664,7 +676,7 @@ typeguard==4.4.1
|
|
|
664
676
|
# via inflect
|
|
665
677
|
types-requests==2.32.0.20241016
|
|
666
678
|
# via emmet-builders (setup.py)
|
|
667
|
-
types-setuptools==75.
|
|
679
|
+
types-setuptools==75.6.0.20241126
|
|
668
680
|
# via emmet-builders (setup.py)
|
|
669
681
|
typing-extensions==4.12.2
|
|
670
682
|
# via
|
|
@@ -691,17 +703,19 @@ urllib3==2.2.3
|
|
|
691
703
|
# requests
|
|
692
704
|
# torchdata
|
|
693
705
|
# types-requests
|
|
694
|
-
virtualenv==20.
|
|
706
|
+
virtualenv==20.28.0
|
|
695
707
|
# via pre-commit
|
|
696
708
|
watchdog==6.0.0
|
|
697
709
|
# via mkdocs
|
|
710
|
+
waterdynamics==1.2.0
|
|
711
|
+
# via mdanalysis
|
|
698
712
|
wcmatch==10.0
|
|
699
713
|
# via mkdocs-awesome-pages-plugin
|
|
700
714
|
wincertstore==0.2.1
|
|
701
715
|
# via emmet-builders (setup.py)
|
|
702
|
-
wrapt==1.
|
|
716
|
+
wrapt==1.17.0
|
|
703
717
|
# via smart-open
|
|
704
|
-
yarl==1.
|
|
718
|
+
yarl==1.18.3
|
|
705
719
|
# via aiohttp
|
|
706
720
|
|
|
707
721
|
# The following packages are considered to be unsafe in a requirements file:
|