emmet-builders 0.84.2rc10__tar.gz → 0.84.3rc2__tar.gz

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  1. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/PKG-INFO +1 -1
  2. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/vasp/materials.py +3 -1
  3. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet_builders.egg-info/PKG-INFO +1 -1
  4. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/requirements/ubuntu-latest_py3.10.txt +50 -18
  5. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/requirements/ubuntu-latest_py3.10_extras.txt +64 -30
  6. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/requirements/ubuntu-latest_py3.11.txt +49 -17
  7. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/requirements/ubuntu-latest_py3.11_extras.txt +63 -29
  8. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/test_elasticity.py +1 -1
  9. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/test_utils.py +3 -1
  10. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/MANIFEST.in +0 -0
  11. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/__init__.py +0 -0
  12. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/abinit/__init__.py +0 -0
  13. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/abinit/phonon.py +0 -0
  14. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/abinit/sound_velocity.py +0 -0
  15. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/feff/__init__.py +0 -0
  16. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/feff/xas.py +0 -0
  17. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/__init__.py +0 -0
  18. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/absorption_spectrum.py +0 -0
  19. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/alloys.py +0 -0
  20. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/basic_descriptors.py +0 -0
  21. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/bonds.py +0 -0
  22. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/chemenv.py +0 -0
  23. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/corrected_entries.py +0 -0
  24. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/dielectric.py +0 -0
  25. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/elasticity.py +0 -0
  26. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/electrodes.py +0 -0
  27. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/electronic_structure.py +0 -0
  28. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/magnetism.py +0 -0
  29. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/ml.py +0 -0
  30. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/optimade.py +0 -0
  31. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/oxidation_states.py +0 -0
  32. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/piezoelectric.py +0 -0
  33. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/provenance.py +0 -0
  34. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/robocrys.py +0 -0
  35. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/similarity.py +0 -0
  36. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/substrates.py +0 -0
  37. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/summary.py +0 -0
  38. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/materials/thermo.py +0 -0
  39. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/matscholar/missing_compositions.py +0 -0
  40. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/mobility/__init__.py +0 -0
  41. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/mobility/migration_graph.py +0 -0
  42. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/molecules/__init__.py +0 -0
  43. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/molecules/atomic.py +0 -0
  44. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/molecules/bonds.py +0 -0
  45. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/molecules/metal_binding.py +0 -0
  46. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/molecules/orbitals.py +0 -0
  47. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/molecules/redox.py +0 -0
  48. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/molecules/summary.py +0 -0
  49. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/molecules/thermo.py +0 -0
  50. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/molecules/vibration.py +0 -0
  51. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/qchem/__init__.py +0 -0
  52. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/qchem/molecules.py +0 -0
  53. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/settings.py +0 -0
  54. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/utils.py +0 -0
  55. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/vasp/__init__.py +0 -0
  56. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/vasp/mp_potcar_stats.json.gz +0 -0
  57. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet/builders/vasp/task_validator.py +0 -0
  58. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet_builders.egg-info/SOURCES.txt +0 -0
  59. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet_builders.egg-info/dependency_links.txt +0 -0
  60. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet_builders.egg-info/not-zip-safe +0 -0
  61. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet_builders.egg-info/requires.txt +0 -0
  62. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/emmet_builders.egg-info/top_level.txt +0 -0
  63. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/requirements/deployment.txt +0 -0
  64. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/setup.cfg +0 -0
  65. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/setup.py +0 -0
  66. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/__init__.py +0 -0
  67. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/conftest.py +0 -0
  68. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/molecules/__init__.py +0 -0
  69. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/molecules/test_atomic.py +0 -0
  70. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/molecules/test_bonds.py +0 -0
  71. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/molecules/test_metal_binding.py +0 -0
  72. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/molecules/test_orbitals.py +0 -0
  73. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/molecules/test_redox.py +0 -0
  74. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/molecules/test_summary.py +0 -0
  75. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/molecules/test_thermo.py +0 -0
  76. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/molecules/test_vibration.py +0 -0
  77. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/test_absorption.py +0 -0
  78. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/test_basic_descriptors.py +0 -0
  79. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/test_chemenv.py +0 -0
  80. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/test_corrected_entries_thermo.py +0 -0
  81. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/test_dielectric.py +0 -0
  82. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/test_electronic_structure.py +0 -0
  83. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/test_magnetism.py +0 -0
  84. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/test_materials.py +0 -0
  85. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/test_ml.py +0 -0
  86. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/test_mobility.py +0 -0
  87. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/test_oxidation.py +0 -0
  88. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/test_piezoelectric.py +0 -0
  89. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/test_qchem.py +0 -0
  90. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/test_similarity.py +0 -0
  91. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/test_summary.py +0 -0
  92. {emmet-builders-0.84.2rc10 → emmet-builders-0.84.3rc2}/tests/test_vasp.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: emmet-builders
3
- Version: 0.84.2rc10
3
+ Version: 0.84.3rc2
4
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  Summary: Builders for the Emmet Library
5
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  Home-page: https://github.com/materialsproject/emmet
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  Author: The Materials Project
@@ -238,9 +238,11 @@ class MaterialsBuilder(Builder):
238
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  grouped_tasks = self.filter_and_group_tasks(tasks, task_transformations)
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  materials = []
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  for group in grouped_tasks:
241
+ # commercial_license == True means that the default CC-BY license is applied
242
+ # commercial_license == False means that a CC-BY-NC license is applied
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  commercial_license = True
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  for task_doc in group:
243
- if set(task_doc.tags).intersection(
245
+ if task_doc.tags and set(task_doc.tags).intersection(
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  set(self.settings.NON_COMMERCIAL_TAGS)
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  ):
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  commercial_license = False
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: emmet-builders
3
- Version: 0.84.2rc10
3
+ Version: 0.84.3rc2
4
4
  Summary: Builders for the Emmet Library
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  Home-page: https://github.com/materialsproject/emmet
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  Author: The Materials Project
@@ -9,7 +9,9 @@ aioitertools==0.12.0
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  annotated-types==0.7.0
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  # via pydantic
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  ase==3.23.0
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- # via matcalc
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+ # via
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+ # matcalc
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+ # pymatgen-analysis-diffusion
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  attrs==24.2.0
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  # via
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  # jsonlines
@@ -17,9 +19,9 @@ attrs==24.2.0
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  # referencing
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  bcrypt==4.2.0
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  # via paramiko
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- boto3==1.35.22
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+ boto3==1.35.34
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  # via maggma
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- botocore==1.35.22
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+ botocore==1.35.34
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  # via
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  # boto3
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  # s3transfer
@@ -37,11 +39,11 @@ cryptography==43.0.1
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  # via paramiko
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  cycler==0.12.1
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  # via matplotlib
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- dnspython==2.6.1
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+ dnspython==2.7.0
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  # via
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  # maggma
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  # pymongo
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- emmet-core[all]==0.84.1
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+ emmet-core[all]==0.84.2
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  # via
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  # emmet-builders (setup.py)
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  # mp-api
@@ -49,14 +51,16 @@ exceptiongroup==1.2.2
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  # via pytest
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  fasteners==0.19
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  # via mdanalysis
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- fonttools==4.53.1
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+ fonttools==4.54.1
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  # via matplotlib
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  griddataformats==1.0.2
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  # via mdanalysis
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- h5py==3.11.0
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+ h5py==3.12.1
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  # via phonopy
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  idna==3.10
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  # via requests
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+ imageio==2.35.1
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+ # via scikit-image
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  inflect==7.4.0
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  # via robocrys
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  iniconfig==2.0.0
@@ -82,13 +86,15 @@ kiwisolver==1.4.7
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  # via matplotlib
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  latexcodec==3.0.0
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  # via pybtex
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- maggma==0.69.3
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+ lazy-loader==0.4
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+ # via scikit-image
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+ maggma==0.69.4
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  # via
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  # emmet-builders (setup.py)
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  # mp-api
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  matcalc==0.0.4
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  # via emmet-core
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- matminer==0.9.2
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+ matminer==0.9.3
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  # via
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  # emmet-builders (setup.py)
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  # robocrys
@@ -98,6 +104,7 @@ matplotlib==3.9.2
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  # mdanalysis
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  # phonopy
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  # pymatgen
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+ # seaborn
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  # solvation-analysis
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  mda-xdrlib==0.2.0
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  # via mdanalysis
@@ -122,6 +129,8 @@ more-itertools==10.5.0
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  # via inflect
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  mp-api==0.42.2
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  # via robocrys
132
+ mp-pyrho==0.4.4
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+ # via pymatgen-analysis-defects
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  mpmath==1.3.0
126
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  # via sympy
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  mrcfile==1.5.3
@@ -135,6 +144,7 @@ networkx==3.3
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  # via
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  # pymatgen
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  # robocrys
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+ # scikit-image
138
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  numpy==1.26.4
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  # via
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  # ase
@@ -142,6 +152,7 @@ numpy==1.26.4
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  # emmet-core
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  # griddataformats
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  # h5py
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+ # imageio
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  # maggma
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  # matminer
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  # matplotlib
@@ -151,32 +162,40 @@ numpy==1.26.4
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  # patsy
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  # phonopy
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  # pymatgen
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+ # pymatgen-analysis-defects
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+ # pymatgen-analysis-diffusion
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  # rdkit
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  # robocrys
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+ # scikit-image
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  # scikit-learn
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  # scipy
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+ # seaborn
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  # seekpath
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  # shapely
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  # solvation-analysis
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  # spglib
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  # statsmodels
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+ # tifffile
163
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  orjson==3.10.7
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  # via maggma
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  packaging==24.1
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  # via
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+ # lazy-loader
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  # matplotlib
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  # mdanalysis
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  # mongomock
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  # plotly
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  # pytest
189
+ # scikit-image
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  # statsmodels
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  palettable==3.3.3
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  # via pymatgen
175
- pandas==2.2.2
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+ pandas==2.2.3
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  # via
177
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  # maggma
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  # matminer
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  # pymatgen
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+ # seaborn
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  # solvation-analysis
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  # statsmodels
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  paramiko==3.5.0
@@ -187,8 +206,10 @@ phonopy==2.28.0
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  # via matcalc
188
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  pillow==10.4.0
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  # via
209
+ # imageio
190
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  # matplotlib
191
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  # rdkit
212
+ # scikit-image
192
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  plotly==5.24.1
193
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  # via
194
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  # pymatgen
@@ -217,20 +238,24 @@ pydantic-settings==2.5.2
217
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  # maggma
218
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  pydash==8.0.3
219
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  # via maggma
220
- pymatgen==2024.4.13
241
+ pymatgen==2024.10.3
221
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  # via
222
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  # emmet-core
223
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  # matcalc
224
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  # matminer
225
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  # mp-api
247
+ # mp-pyrho
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  # pymatgen-analysis-alloys
249
+ # pymatgen-analysis-defects
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  # pymatgen-analysis-diffusion
228
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  # robocrys
229
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  pymatgen-analysis-alloys==0.0.6
230
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  # via emmet-core
231
- pymatgen-analysis-diffusion==2023.8.15
254
+ pymatgen-analysis-defects==2024.7.19
255
+ # via emmet-core
256
+ pymatgen-analysis-diffusion==2024.7.15
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  # via emmet-core
233
- pymongo==4.9.1
258
+ pymongo==4.10.1
234
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  # via
235
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  # maggma
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  # matminer
@@ -269,7 +294,7 @@ requests==2.32.3
269
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  # matminer
270
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  # mp-api
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  # pymatgen
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- robocrys==0.2.9
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+ robocrys==0.2.10
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  # via emmet-core
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  rpds-py==0.20.0
275
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  # via
@@ -284,6 +309,8 @@ ruamel-yaml-clib==0.2.8
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  # via ruamel-yaml
285
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  s3transfer==0.10.2
286
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  # via boto3
312
+ scikit-image==0.24.0
313
+ # via pymatgen-analysis-defects
287
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  scikit-learn==1.5.2
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  # via matminer
289
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  scipy==1.14.1
@@ -293,9 +320,12 @@ scipy==1.14.1
293
320
  # mdanalysis
294
321
  # pymatgen
295
322
  # robocrys
323
+ # scikit-image
296
324
  # scikit-learn
297
325
  # solvation-analysis
298
326
  # statsmodels
327
+ seaborn==0.13.2
328
+ # via pymatgen-analysis-diffusion
299
329
  seekpath==2.1.0
300
330
  # via emmet-core
301
331
  sentinels==1.0.0
@@ -307,7 +337,7 @@ six==1.16.0
307
337
  # patsy
308
338
  # pybtex
309
339
  # python-dateutil
310
- smart-open==7.0.4
340
+ smart-open==7.0.5
311
341
  # via mp-api
312
342
  solvation-analysis==0.4.1
313
343
  # via
@@ -321,7 +351,7 @@ spglib==2.5.0
321
351
  # seekpath
322
352
  sshtunnel==0.4.0
323
353
  # via maggma
324
- statsmodels==0.14.3
354
+ statsmodels==0.14.4
325
355
  # via solvation-analysis
326
356
  sympy==1.13.3
327
357
  # via
@@ -335,7 +365,9 @@ threadpoolctl==3.5.0
335
365
  # via
336
366
  # mdanalysis
337
367
  # scikit-learn
338
- tomli==2.0.1
368
+ tifffile==2024.9.20
369
+ # via scikit-image
370
+ tomli==2.0.2
339
371
  # via pytest
340
372
  tqdm==4.66.5
341
373
  # via
@@ -353,7 +385,7 @@ typing-extensions==4.12.2
353
385
  # pydantic-core
354
386
  # pydash
355
387
  # typeguard
356
- tzdata==2024.1
388
+ tzdata==2024.2
357
389
  # via pandas
358
390
  uncertainties==3.2.2
359
391
  # via pymatgen
@@ -4,9 +4,9 @@
4
4
  #
5
5
  # pip-compile --all-extras --output-file=requirements/ubuntu-latest_py3.10_extras.txt
6
6
  #
7
- aiohappyeyeballs==2.4.0
7
+ aiohappyeyeballs==2.4.3
8
8
  # via aiohttp
9
- aiohttp==3.10.5
9
+ aiohttp==3.10.9
10
10
  # via fsspec
11
11
  aioitertools==0.12.0
12
12
  # via maggma
@@ -19,6 +19,7 @@ ase==3.23.0
19
19
  # chgnet
20
20
  # matcalc
21
21
  # matgl
22
+ # pymatgen-analysis-diffusion
22
23
  async-timeout==4.0.3
23
24
  # via aiohttp
24
25
  attrs==24.2.0
@@ -29,13 +30,13 @@ attrs==24.2.0
29
30
  # referencing
30
31
  bcrypt==4.2.0
31
32
  # via paramiko
32
- boto3==1.35.22
33
+ boto3==1.35.34
33
34
  # via maggma
34
- botocore==1.35.22
35
+ botocore==1.35.34
35
36
  # via
36
37
  # boto3
37
38
  # s3transfer
38
- bracex==2.5
39
+ bracex==2.5.post1
39
40
  # via wcmatch
40
41
  certifi==2024.8.30
41
42
  # via requests
@@ -47,7 +48,7 @@ cfgv==3.4.0
47
48
  # via pre-commit
48
49
  charset-normalizer==3.3.2
49
50
  # via requests
50
- chgnet==0.3.8
51
+ chgnet==0.4.0
51
52
  # via emmet-core
52
53
  click==8.1.7
53
54
  # via
@@ -68,14 +69,16 @@ cycler==0.12.1
68
69
  cython==3.0.11
69
70
  # via chgnet
70
71
  dgl==2.1.0
71
- # via matgl
72
+ # via
73
+ # emmet-core
74
+ # matgl
72
75
  distlib==0.3.8
73
76
  # via virtualenv
74
- dnspython==2.6.1
77
+ dnspython==2.7.0
75
78
  # via
76
79
  # maggma
77
80
  # pymongo
78
- emmet-core[all,ml]==0.84.1
81
+ emmet-core[all,ml]==0.84.2
79
82
  # via
80
83
  # emmet-builders (setup.py)
81
84
  # mp-api
@@ -90,7 +93,7 @@ filelock==3.16.1
90
93
  # virtualenv
91
94
  flake8==7.1.1
92
95
  # via emmet-builders (setup.py)
93
- fonttools==4.53.1
96
+ fonttools==4.54.1
94
97
  # via matplotlib
95
98
  frozenlist==1.4.1
96
99
  # via
@@ -105,9 +108,9 @@ ghp-import==2.1.0
105
108
  # via mkdocs
106
109
  griddataformats==1.0.2
107
110
  # via mdanalysis
108
- griffe==1.3.1
111
+ griffe==1.3.2
109
112
  # via mkdocstrings-python
110
- h5py==3.11.0
113
+ h5py==3.12.1
111
114
  # via phonopy
112
115
  htmlmin2==0.1.13
113
116
  # via mkdocs-minify-plugin
@@ -117,6 +120,8 @@ idna==3.10
117
120
  # via
118
121
  # requests
119
122
  # yarl
123
+ imageio==2.35.1
124
+ # via scikit-image
120
125
  inflect==7.4.0
121
126
  # via robocrys
122
127
  iniconfig==2.0.0
@@ -151,6 +156,8 @@ kiwisolver==1.4.7
151
156
  # via matplotlib
152
157
  latexcodec==3.0.0
153
158
  # via pybtex
159
+ lazy-loader==0.4
160
+ # via scikit-image
154
161
  lightning==2.4.0
155
162
  # via matgl
156
163
  lightning-utilities==0.11.7
@@ -160,7 +167,7 @@ lightning-utilities==0.11.7
160
167
  # torchmetrics
161
168
  livereload==2.7.0
162
169
  # via emmet-builders (setup.py)
163
- maggma==0.69.3
170
+ maggma==0.69.4
164
171
  # via
165
172
  # emmet-builders (setup.py)
166
173
  # mp-api
@@ -181,7 +188,7 @@ matcalc==0.0.4
181
188
  # via emmet-core
182
189
  matgl==1.1.3
183
190
  # via emmet-core
184
- matminer==0.9.2
191
+ matminer==0.9.3
185
192
  # via
186
193
  # emmet-builders (setup.py)
187
194
  # robocrys
@@ -191,6 +198,7 @@ matplotlib==3.9.2
191
198
  # mdanalysis
192
199
  # phonopy
193
200
  # pymatgen
201
+ # seaborn
194
202
  # solvation-analysis
195
203
  mccabe==0.7.0
196
204
  # via flake8
@@ -255,6 +263,8 @@ more-itertools==10.5.0
255
263
  # via inflect
256
264
  mp-api==0.42.2
257
265
  # via robocrys
266
+ mp-pyrho==0.4.4
267
+ # via pymatgen-analysis-defects
258
268
  mpmath==1.3.0
259
269
  # via sympy
260
270
  mrcfile==1.5.3
@@ -281,6 +291,7 @@ networkx==3.3
281
291
  # dgl
282
292
  # pymatgen
283
293
  # robocrys
294
+ # scikit-image
284
295
  # torch
285
296
  nodeenv==1.9.1
286
297
  # via pre-commit
@@ -293,6 +304,7 @@ numpy==1.26.4
293
304
  # emmet-core
294
305
  # griddataformats
295
306
  # h5py
307
+ # imageio
296
308
  # maggma
297
309
  # matminer
298
310
  # matplotlib
@@ -302,16 +314,21 @@ numpy==1.26.4
302
314
  # patsy
303
315
  # phonopy
304
316
  # pymatgen
317
+ # pymatgen-analysis-defects
318
+ # pymatgen-analysis-diffusion
305
319
  # rdkit
306
320
  # robocrys
321
+ # scikit-image
307
322
  # scikit-learn
308
323
  # scipy
324
+ # seaborn
309
325
  # seekpath
310
326
  # shapely
311
327
  # solvation-analysis
312
328
  # spglib
313
329
  # statsmodels
314
330
  # tidynamics
331
+ # tifffile
315
332
  # torchmetrics
316
333
  nvidia-cublas-cu12==12.1.3.1
317
334
  # via
@@ -340,7 +357,7 @@ nvidia-ml-py3==7.352.0
340
357
  # via chgnet
341
358
  nvidia-nccl-cu12==2.20.5
342
359
  # via torch
343
- nvidia-nvjitlink-cu12==12.6.68
360
+ nvidia-nvjitlink-cu12==12.6.77
344
361
  # via
345
362
  # nvidia-cusolver-cu12
346
363
  # nvidia-cusparse-cu12
@@ -350,6 +367,7 @@ orjson==3.10.7
350
367
  # via maggma
351
368
  packaging==24.1
352
369
  # via
370
+ # lazy-loader
353
371
  # lightning
354
372
  # lightning-utilities
355
373
  # matplotlib
@@ -359,15 +377,17 @@ packaging==24.1
359
377
  # plotly
360
378
  # pytest
361
379
  # pytorch-lightning
380
+ # scikit-image
362
381
  # statsmodels
363
382
  # torchmetrics
364
383
  palettable==3.3.3
365
384
  # via pymatgen
366
- pandas==2.2.2
385
+ pandas==2.2.3
367
386
  # via
368
387
  # maggma
369
388
  # matminer
370
389
  # pymatgen
390
+ # seaborn
371
391
  # solvation-analysis
372
392
  # statsmodels
373
393
  paramiko==3.5.0
@@ -380,8 +400,10 @@ phonopy==2.28.0
380
400
  # via matcalc
381
401
  pillow==10.4.0
382
402
  # via
403
+ # imageio
383
404
  # matplotlib
384
405
  # rdkit
406
+ # scikit-image
385
407
  platformdirs==4.3.6
386
408
  # via
387
409
  # mkdocs-get-deps
@@ -393,7 +415,7 @@ plotly==5.24.1
393
415
  # solvation-analysis
394
416
  pluggy==1.5.0
395
417
  # via pytest
396
- pre-commit==3.8.0
418
+ pre-commit==4.0.0
397
419
  # via emmet-builders (setup.py)
398
420
  psutil==6.0.0
399
421
  # via dgl
@@ -430,7 +452,7 @@ pyflakes==3.2.0
430
452
  # via flake8
431
453
  pygments==2.18.0
432
454
  # via mkdocs-material
433
- pymatgen==2024.4.13
455
+ pymatgen==2024.10.3
434
456
  # via
435
457
  # chgnet
436
458
  # emmet-core
@@ -438,18 +460,22 @@ pymatgen==2024.4.13
438
460
  # matgl
439
461
  # matminer
440
462
  # mp-api
463
+ # mp-pyrho
441
464
  # pymatgen-analysis-alloys
465
+ # pymatgen-analysis-defects
442
466
  # pymatgen-analysis-diffusion
443
467
  # robocrys
444
468
  pymatgen-analysis-alloys==0.0.6
445
469
  # via emmet-core
446
- pymatgen-analysis-diffusion==2023.8.15
470
+ pymatgen-analysis-defects==2024.7.19
447
471
  # via emmet-core
448
- pymdown-extensions==10.9
472
+ pymatgen-analysis-diffusion==2024.7.15
473
+ # via emmet-core
474
+ pymdown-extensions==10.11.2
449
475
  # via
450
476
  # mkdocs-material
451
477
  # mkdocstrings
452
- pymongo==4.9.1
478
+ pymongo==4.10.1
453
479
  # via
454
480
  # maggma
455
481
  # matminer
@@ -508,7 +534,7 @@ requests==2.32.3
508
534
  # mp-api
509
535
  # pymatgen
510
536
  # torchdata
511
- robocrys==0.2.9
537
+ robocrys==0.2.10
512
538
  # via emmet-core
513
539
  rpds-py==0.20.0
514
540
  # via
@@ -523,6 +549,8 @@ ruamel-yaml-clib==0.2.8
523
549
  # via ruamel-yaml
524
550
  s3transfer==0.10.2
525
551
  # via boto3
552
+ scikit-image==0.24.0
553
+ # via pymatgen-analysis-defects
526
554
  scikit-learn==1.5.2
527
555
  # via matminer
528
556
  scipy==1.14.1
@@ -533,9 +561,12 @@ scipy==1.14.1
533
561
  # mdanalysis
534
562
  # pymatgen
535
563
  # robocrys
564
+ # scikit-image
536
565
  # scikit-learn
537
566
  # solvation-analysis
538
567
  # statsmodels
568
+ seaborn==0.13.2
569
+ # via pymatgen-analysis-diffusion
539
570
  seekpath==2.1.0
540
571
  # via emmet-core
541
572
  sentinels==1.0.0
@@ -547,7 +578,7 @@ six==1.16.0
547
578
  # patsy
548
579
  # pybtex
549
580
  # python-dateutil
550
- smart-open==7.0.4
581
+ smart-open==7.0.5
551
582
  # via mp-api
552
583
  snowballstemmer==2.2.0
553
584
  # via pydocstyle
@@ -563,7 +594,7 @@ spglib==2.5.0
563
594
  # seekpath
564
595
  sshtunnel==0.4.0
565
596
  # via maggma
566
- statsmodels==0.14.3
597
+ statsmodels==0.14.4
567
598
  # via solvation-analysis
568
599
  sympy==1.13.3
569
600
  # via
@@ -580,7 +611,9 @@ threadpoolctl==3.5.0
580
611
  # scikit-learn
581
612
  tidynamics==1.1.2
582
613
  # via transport-analysis
583
- tomli==2.0.1
614
+ tifffile==2024.9.20
615
+ # via scikit-image
616
+ tomli==2.0.2
584
617
  # via
585
618
  # coverage
586
619
  # mypy
@@ -624,6 +657,7 @@ types-setuptools==75.1.0.20240917
624
657
  # via emmet-builders (setup.py)
625
658
  typing-extensions==4.12.2
626
659
  # via
660
+ # chgnet
627
661
  # emmet-core
628
662
  # lightning
629
663
  # lightning-utilities
@@ -636,7 +670,7 @@ typing-extensions==4.12.2
636
670
  # pytorch-lightning
637
671
  # torch
638
672
  # typeguard
639
- tzdata==2024.1
673
+ tzdata==2024.2
640
674
  # via pandas
641
675
  uncertainties==3.2.2
642
676
  # via pymatgen
@@ -646,17 +680,17 @@ urllib3==2.2.3
646
680
  # requests
647
681
  # torchdata
648
682
  # types-requests
649
- virtualenv==20.26.5
683
+ virtualenv==20.26.6
650
684
  # via pre-commit
651
- watchdog==5.0.2
685
+ watchdog==5.0.3
652
686
  # via mkdocs
653
- wcmatch==9.0
687
+ wcmatch==10.0
654
688
  # via mkdocs-awesome-pages-plugin
655
689
  wincertstore==0.2.1
656
690
  # via emmet-builders (setup.py)
657
691
  wrapt==1.16.0
658
692
  # via smart-open
659
- yarl==1.11.1
693
+ yarl==1.13.1
660
694
  # via aiohttp
661
695
 
662
696
  # The following packages are considered to be unsafe in a requirements file: