emdbva 0.0.1.dev148__tar.gz → 0.0.1.dev151__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (56) hide show
  1. {emdbva-0.0.1.dev148/emdbva.egg-info → emdbva-0.0.1.dev151}/PKG-INFO +1 -1
  2. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151/emdbva.egg-info}/PKG-INFO +1 -1
  3. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/phaserandomization.py +1 -1
  4. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/prepareandrun_codon_airflow.py +0 -0
  5. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/validationanalysis.py +2 -2
  6. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/version.py +1 -1
  7. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/LICENSE +0 -0
  8. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/MANIFEST.in +0 -0
  9. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/README.rst +0 -0
  10. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/emdbva.egg-info/SOURCES.txt +0 -0
  11. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/emdbva.egg-info/dependency_links.txt +0 -0
  12. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/emdbva.egg-info/entry_points.txt +0 -0
  13. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/emdbva.egg-info/requires.txt +0 -0
  14. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/emdbva.egg-info/top_level.txt +0 -0
  15. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/setup.cfg +0 -0
  16. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/setup.py +0 -0
  17. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/PATHS_codon_airflow.py +0 -0
  18. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/__init__.py +0 -0
  19. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/audit/__init__.py +0 -0
  20. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/audit/cif_revision.py +0 -0
  21. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/mainva.py +0 -0
  22. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/__init__.py +0 -0
  23. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/bars.py +0 -0
  24. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/connected_percentage.py +0 -0
  25. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/contour_level_predicator.py +0 -0
  26. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/emda_mmcc.py +0 -0
  27. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/emringer.py +0 -0
  28. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/inclusion.py +0 -0
  29. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/map_data_validation.py +0 -0
  30. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/map_map_cc.py +0 -0
  31. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/overlap_percentage.py +0 -0
  32. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/phenix_cc.py +0 -0
  33. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/phenix_mm.py +0 -0
  34. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/projections.py +0 -0
  35. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/qscore.py +0 -0
  36. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/residue_locres.py +0 -0
  37. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/resmap.py +0 -0
  38. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/smoc.py +0 -0
  39. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/strudel.py +0 -0
  40. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/surfaces.py +0 -0
  41. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/threedfsc.py +0 -0
  42. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/preparation.py +0 -0
  43. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/qscores.csv +0 -0
  44. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/schemas/__init__.py +0 -0
  45. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/schemas/emdb_entry_full.schema.json +0 -0
  46. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/schemas/loader.py +0 -0
  47. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/utils/Checker.py +0 -0
  48. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/utils/ChimeraxViews.py +0 -0
  49. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/utils/MapProcessor.py +0 -0
  50. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/utils/Model.py +0 -0
  51. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/utils/__init__.py +0 -0
  52. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/utils/cl_weights.pth +0 -0
  53. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/utils/log_utils.py +0 -0
  54. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/utils/misc.py +0 -0
  55. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/utils/rescolor.py +0 -0
  56. {emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/utils/stars.py +0 -0
{emdbva-0.0.1.dev148/emdbva.egg-info → emdbva-0.0.1.dev151}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: emdbva
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- Version: 0.0.1.dev148
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+ Version: 0.0.1.dev151
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  Summary: CryoEM validation toolkit
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  Home-page: https://test.pypi.org/project/va/
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  Author: Zhe Wang
{emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151/emdbva.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: emdbva
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- Version: 0.0.1.dev148
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+ Version: 0.0.1.dev151
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  Summary: CryoEM validation toolkit
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  Home-page: https://test.pypi.org/project/va/
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  Author: Zhe Wang
{emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/metrics/phaserandomization.py RENAMED
@@ -221,7 +221,7 @@ def relion_auto_mask_fast(data, threshold, extend_pixels, edge_width, verbose=Tr
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  steps = []
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  if verbose:
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  steps = tqdm(total=3, desc="Masking Steps", unit="step")
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-
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+
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  # Step 1: Initial binary mask
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  mask = (data >= threshold).astype(np.float32)
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  if verbose:
{emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/validationanalysis.py RENAMED
@@ -228,8 +228,8 @@ class ValidationAnalysis:
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  self.get_resolution()
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  self.relion_mask = None
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  self.masked_rawmap = None
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- # if self.rawmap:
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- # self.relion_mask = self.get_relion_mask()
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+ if self.rawmap:
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+ self.relion_mask = self.get_relion_mask()
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  # make a symbolic link for relion_mask in the va folder
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  if self.relion_mask:
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  mask_name = os.path.basename(self.relion_mask)
{emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/va/version.py RENAMED
@@ -18,5 +18,5 @@ under the License.
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  """
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- __version__ = '0.0.1.dev148'
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+ __version__ = '0.0.1.dev151'
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  __em_statistics_version__ = '202505.v01'
{emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/LICENSE RENAMED
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{emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/MANIFEST.in RENAMED
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{emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/README.rst RENAMED
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{emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/setup.cfg RENAMED
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{emdbva-0.0.1.dev148 → emdbva-0.0.1.dev151}/setup.py RENAMED
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