emdbva 0.0.1.dev137__tar.gz → 0.0.1.dev140__tar.gz

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Files changed (50) hide show
  1. {emdbva-0.0.1.dev137/emdbva.egg-info → emdbva-0.0.1.dev140}/PKG-INFO +1 -1
  2. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140/emdbva.egg-info}/PKG-INFO +1 -1
  3. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/emdbva.egg-info/SOURCES.txt +1 -0
  4. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/mainva.py +3 -3
  5. emdbva-0.0.1.dev140/va/metrics/map_data_validation.py +781 -0
  6. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/preparation.py +307 -11
  7. emdbva-0.0.1.dev140/va/prepareandrun_codon_airflow.py +1170 -0
  8. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/validationanalysis.py +67 -20
  9. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/version.py +1 -1
  10. emdbva-0.0.1.dev137/va/metrics/map_data_validation.py +0 -59
  11. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/LICENSE +0 -0
  12. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/MANIFEST.in +0 -0
  13. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/README.rst +0 -0
  14. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/emdbva.egg-info/dependency_links.txt +0 -0
  15. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/emdbva.egg-info/entry_points.txt +0 -0
  16. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/emdbva.egg-info/requires.txt +0 -0
  17. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/emdbva.egg-info/top_level.txt +0 -0
  18. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/setup.cfg +0 -0
  19. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/setup.py +0 -0
  20. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/__init__.py +0 -0
  21. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/metrics/__init__.py +0 -0
  22. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/metrics/bars.py +0 -0
  23. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/metrics/connected_percentage.py +0 -0
  24. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/metrics/contour_level_predicator.py +0 -0
  25. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/metrics/emda_mmcc.py +0 -0
  26. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/metrics/emringer.py +0 -0
  27. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/metrics/inclusion.py +0 -0
  28. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/metrics/overlap_percentage.py +0 -0
  29. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/metrics/phaserandomization.py +0 -0
  30. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/metrics/phenix_cc.py +0 -0
  31. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/metrics/phenix_mm.py +0 -0
  32. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/metrics/projections.py +0 -0
  33. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/metrics/qscore.py +0 -0
  34. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/metrics/residue_locres.py +0 -0
  35. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/metrics/resmap.py +0 -0
  36. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/metrics/smoc.py +0 -0
  37. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/metrics/strudel.py +0 -0
  38. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/metrics/surfaces.py +0 -0
  39. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/metrics/threedfsc.py +0 -0
  40. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/qscores.csv +0 -0
  41. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/utils/Checker.py +0 -0
  42. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/utils/ChimeraxViews.py +0 -0
  43. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/utils/MapProcessor.py +0 -0
  44. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/utils/Model.py +0 -0
  45. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/utils/__init__.py +0 -0
  46. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/utils/cl_weights.pth +0 -0
  47. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/utils/log_utils.py +0 -0
  48. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/utils/misc.py +0 -0
  49. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/utils/rescolor.py +0 -0
  50. {emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/utils/stars.py +0 -0
{emdbva-0.0.1.dev137/emdbva.egg-info → emdbva-0.0.1.dev140}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: emdbva
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- Version: 0.0.1.dev137
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+ Version: 0.0.1.dev140
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  Summary: CryoEM validation toolkit
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  Home-page: https://test.pypi.org/project/va/
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  Author: Zhe Wang
{emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140/emdbva.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: emdbva
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- Version: 0.0.1.dev137
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+ Version: 0.0.1.dev140
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  Summary: CryoEM validation toolkit
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  Home-page: https://test.pypi.org/project/va/
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  Author: Zhe Wang
{emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/emdbva.egg-info/SOURCES.txt RENAMED
@@ -11,6 +11,7 @@ emdbva.egg-info/top_level.txt
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  va/__init__.py
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  va/mainva.py
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  va/preparation.py
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+ va/prepareandrun_codon_airflow.py
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  va/qscores.csv
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  va/validationanalysis.py
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  va/version.py
{emdbva-0.0.1.dev137 → emdbva-0.0.1.dev140}/va/mainva.py RENAMED
@@ -121,9 +121,9 @@ def allruns(validationobj, runs):
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  if 'symmetry' in runs:
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  validationobj.symmetry()
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- # Strudel
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- if 'strudel' in runs:
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- validationobj.strudel()
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+ # Strudel (turning off)
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+ # if 'strudel' in runs:
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+ # validationobj.strudel()
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  # Q-score
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  if 'qscore' in runs: