emdbva 0.0.1.dev131__tar.gz → 0.0.1.dev132__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (47) hide show
  1. {emdbva-0.0.1.dev131/emdbva.egg-info → emdbva-0.0.1.dev132}/PKG-INFO +1 -1
  2. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132/emdbva.egg-info}/PKG-INFO +1 -1
  3. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/utils/stars.py +10 -2
  4. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/version.py +1 -1
  5. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/LICENSE +0 -0
  6. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/MANIFEST.in +0 -0
  7. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/README.rst +0 -0
  8. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/emdbva.egg-info/SOURCES.txt +0 -0
  9. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/emdbva.egg-info/dependency_links.txt +0 -0
  10. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/emdbva.egg-info/entry_points.txt +0 -0
  11. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/emdbva.egg-info/requires.txt +0 -0
  12. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/emdbva.egg-info/top_level.txt +0 -0
  13. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/setup.cfg +0 -0
  14. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/setup.py +0 -0
  15. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/__init__.py +0 -0
  16. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/mainva.py +0 -0
  17. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/metrics/__init__.py +0 -0
  18. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/metrics/bars.py +0 -0
  19. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/metrics/connected_percentage.py +0 -0
  20. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/metrics/contour_level_predicator.py +0 -0
  21. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/metrics/emda_mmcc.py +0 -0
  22. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/metrics/emringer.py +0 -0
  23. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/metrics/inclusion.py +0 -0
  24. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/metrics/overlap_percentage.py +0 -0
  25. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/metrics/phaserandomization.py +0 -0
  26. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/metrics/phenix_cc.py +0 -0
  27. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/metrics/phenix_mm.py +0 -0
  28. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/metrics/projections.py +0 -0
  29. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/metrics/qscore.py +0 -0
  30. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/metrics/residue_locres.py +0 -0
  31. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/metrics/resmap.py +0 -0
  32. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/metrics/smoc.py +0 -0
  33. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/metrics/strudel.py +0 -0
  34. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/metrics/surfaces.py +0 -0
  35. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/metrics/threedfsc.py +0 -0
  36. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/preparation.py +0 -0
  37. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/qscores.csv +0 -0
  38. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/utils/Checker.py +0 -0
  39. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/utils/ChimeraxViews.py +0 -0
  40. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/utils/MapProcessor.py +0 -0
  41. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/utils/Model.py +0 -0
  42. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/utils/__init__.py +0 -0
  43. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/utils/cl_weights.pth +0 -0
  44. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/utils/log_utils.py +0 -0
  45. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/utils/misc.py +0 -0
  46. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/utils/rescolor.py +0 -0
  47. {emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/validationanalysis.py +0 -0
{emdbva-0.0.1.dev131/emdbva.egg-info → emdbva-0.0.1.dev132}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: emdbva
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- Version: 0.0.1.dev131
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+ Version: 0.0.1.dev132
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  Summary: CryoEM validation toolkit
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  Home-page: https://test.pypi.org/project/va/
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  Author: Zhe Wang
{emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132/emdbva.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: emdbva
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- Version: 0.0.1.dev131
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+ Version: 0.0.1.dev132
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  Summary: CryoEM validation toolkit
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  Home-page: https://test.pypi.org/project/va/
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  Author: Zhe Wang
{emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/utils/stars.py RENAMED
@@ -66,10 +66,16 @@ class GetStars:
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  def bfactor_sharpen(self):
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  """
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- Get the resolution value that Relion is use for the phase randomization calculation
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+ Get the B-factor value that Relion is use for the sharpening of the map in postprocess
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  """
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  return float(self.data_general_block()['_rlnBfactorUsedForSharpening'])
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+ def guinier_correlation(self):
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+ """
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+ Get the correlation value of the Guinier plot
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+ """
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+ return float(self.data_general_block()['_rlnCorrelationFitGuinierPlot'])
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+
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  def data_fsc_block(self):
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  """
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  Get the data_fsc block
@@ -222,6 +228,7 @@ class GetStars:
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  phase_rand = data_fsc_block.get('CorrectedFourierShellCorrelationPhaseRandomizedMaskedMaps', None)
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  randomise_from = self.randomise_from()
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  sharpen_bfactor = self.bfactor_sharpen()
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+ guinier_correlation = self.guinier_correlation()
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  x_gold, y_gold = interpolated_intercept(x, correlation, gold)
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  x_half, y_half = interpolated_intercept(x, correlation, half)
@@ -289,7 +296,8 @@ class GetStars:
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  'phase_randomized_half': {'x': x_phase_half, 'y': y_phase_half},
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  'phase_randomized_halfbit': {'x': x_phase_halfbit, 'y': y_phase_halfbit},
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  'randomise_from': randomise_from,
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- 'sharpen_bfactor': sharpen_bfactor
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+ 'sharpen_bfactor': sharpen_bfactor,
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+ 'guinier_correlation': guinier_correlation
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  }
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  }
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{emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/va/version.py RENAMED
@@ -18,5 +18,5 @@ under the License.
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  """
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- __version__ = '0.0.1.dev131'
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+ __version__ = '0.0.1.dev132'
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  __em_statistics_version__ = '202505.v01'
{emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/LICENSE RENAMED
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{emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/MANIFEST.in RENAMED
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{emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/README.rst RENAMED
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{emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/setup.cfg RENAMED
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{emdbva-0.0.1.dev131 → emdbva-0.0.1.dev132}/setup.py RENAMED
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