embasi 0.1.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- embasi-0.1.0/.gitignore +5 -0
- embasi-0.1.0/LICENSE +21 -0
- embasi-0.1.0/PKG-INFO +52 -0
- embasi-0.1.0/README.md +14 -0
- embasi-0.1.0/docs/Makefile +20 -0
- embasi-0.1.0/docs/_build/doctrees/ASI_Embedding.doctree +0 -0
- embasi-0.1.0/docs/_build/doctrees/codeintegration.doctree +0 -0
- embasi-0.1.0/docs/_build/doctrees/environment.pickle +0 -0
- embasi-0.1.0/docs/_build/doctrees/explainer.doctree +0 -0
- embasi-0.1.0/docs/_build/doctrees/index.doctree +0 -0
- embasi-0.1.0/docs/_build/doctrees/installation.doctree +0 -0
- embasi-0.1.0/docs/_build/doctrees/modules.doctree +0 -0
- embasi-0.1.0/docs/_build/doctrees/tutorials.doctree +0 -0
- embasi-0.1.0/docs/_build/html/.buildinfo +4 -0
- embasi-0.1.0/docs/_build/html/ASI_Embedding.html +893 -0
- embasi-0.1.0/docs/_build/html/_images/plant_asiembedding_classes.png +0 -0
- embasi-0.1.0/docs/_build/html/_images/plant_asiembedding_devroadmap.png +0 -0
- embasi-0.1.0/docs/_build/html/_images/plant_flow.png +0 -0
- embasi-0.1.0/docs/_build/html/_modules/ASI_Embedding/atoms_embedding_asi.html +622 -0
- embasi-0.1.0/docs/_build/html/_modules/ASI_Embedding/basis_info.html +197 -0
- embasi-0.1.0/docs/_build/html/_modules/ASI_Embedding/embedding.html +601 -0
- embasi-0.1.0/docs/_build/html/_modules/ASI_Embedding/parallel_utils.html +125 -0
- embasi-0.1.0/docs/_build/html/_modules/asiembedding/atoms_embedding_asi.html +621 -0
- embasi-0.1.0/docs/_build/html/_modules/asiembedding/basis_info.html +197 -0
- embasi-0.1.0/docs/_build/html/_modules/asiembedding/embedding.html +601 -0
- embasi-0.1.0/docs/_build/html/_modules/asiembedding/parallel_utils.html +172 -0
- embasi-0.1.0/docs/_build/html/_modules/index.html +109 -0
- embasi-0.1.0/docs/_build/html/_sources/ASI_Embedding.rst.txt +45 -0
- embasi-0.1.0/docs/_build/html/_sources/codeintegration.rst.txt +22 -0
- embasi-0.1.0/docs/_build/html/_sources/explainer.rst.txt +15 -0
- embasi-0.1.0/docs/_build/html/_sources/index.rst.txt +26 -0
- embasi-0.1.0/docs/_build/html/_sources/installation.rst.txt +55 -0
- embasi-0.1.0/docs/_build/html/_sources/modules.rst.txt +7 -0
- embasi-0.1.0/docs/_build/html/_sources/tutorials.rst.txt +18 -0
- embasi-0.1.0/docs/_build/html/_static/_sphinx_javascript_frameworks_compat.js +123 -0
- embasi-0.1.0/docs/_build/html/_static/basic.css +925 -0
- embasi-0.1.0/docs/_build/html/_static/css/badge_only.css +1 -0
- embasi-0.1.0/docs/_build/html/_static/css/fonts/Roboto-Slab-Bold.woff +0 -0
- embasi-0.1.0/docs/_build/html/_static/css/fonts/Roboto-Slab-Bold.woff2 +0 -0
- embasi-0.1.0/docs/_build/html/_static/css/fonts/Roboto-Slab-Regular.woff +0 -0
- embasi-0.1.0/docs/_build/html/_static/css/fonts/Roboto-Slab-Regular.woff2 +0 -0
- embasi-0.1.0/docs/_build/html/_static/css/fonts/fontawesome-webfont.eot +0 -0
- embasi-0.1.0/docs/_build/html/_static/css/fonts/fontawesome-webfont.svg +2671 -0
- embasi-0.1.0/docs/_build/html/_static/css/fonts/fontawesome-webfont.ttf +0 -0
- embasi-0.1.0/docs/_build/html/_static/css/fonts/fontawesome-webfont.woff +0 -0
- embasi-0.1.0/docs/_build/html/_static/css/fonts/fontawesome-webfont.woff2 +0 -0
- embasi-0.1.0/docs/_build/html/_static/css/fonts/lato-bold-italic.woff +0 -0
- embasi-0.1.0/docs/_build/html/_static/css/fonts/lato-bold-italic.woff2 +0 -0
- embasi-0.1.0/docs/_build/html/_static/css/fonts/lato-bold.woff +0 -0
- embasi-0.1.0/docs/_build/html/_static/css/fonts/lato-bold.woff2 +0 -0
- embasi-0.1.0/docs/_build/html/_static/css/fonts/lato-normal-italic.woff +0 -0
- embasi-0.1.0/docs/_build/html/_static/css/fonts/lato-normal-italic.woff2 +0 -0
- embasi-0.1.0/docs/_build/html/_static/css/fonts/lato-normal.woff +0 -0
- embasi-0.1.0/docs/_build/html/_static/css/fonts/lato-normal.woff2 +0 -0
- embasi-0.1.0/docs/_build/html/_static/css/theme.css +4 -0
- embasi-0.1.0/docs/_build/html/_static/doctools.js +156 -0
- embasi-0.1.0/docs/_build/html/_static/documentation_options.js +13 -0
- embasi-0.1.0/docs/_build/html/_static/file.png +0 -0
- embasi-0.1.0/docs/_build/html/_static/jquery.js +2 -0
- embasi-0.1.0/docs/_build/html/_static/js/badge_only.js +1 -0
- embasi-0.1.0/docs/_build/html/_static/js/html5shiv-printshiv.min.js +4 -0
- embasi-0.1.0/docs/_build/html/_static/js/html5shiv.min.js +4 -0
- embasi-0.1.0/docs/_build/html/_static/js/theme.js +1 -0
- embasi-0.1.0/docs/_build/html/_static/language_data.js +199 -0
- embasi-0.1.0/docs/_build/html/_static/minus.png +0 -0
- embasi-0.1.0/docs/_build/html/_static/plus.png +0 -0
- embasi-0.1.0/docs/_build/html/_static/pygments.css +75 -0
- embasi-0.1.0/docs/_build/html/_static/searchtools.js +620 -0
- embasi-0.1.0/docs/_build/html/_static/sphinx_highlight.js +154 -0
- embasi-0.1.0/docs/_build/html/codeintegration.html +138 -0
- embasi-0.1.0/docs/_build/html/explainer.html +123 -0
- embasi-0.1.0/docs/_build/html/genindex.html +467 -0
- embasi-0.1.0/docs/_build/html/index.html +144 -0
- embasi-0.1.0/docs/_build/html/installation.html +171 -0
- embasi-0.1.0/docs/_build/html/modules.html +220 -0
- embasi-0.1.0/docs/_build/html/objects.inv +0 -0
- embasi-0.1.0/docs/_build/html/py-modindex.html +145 -0
- embasi-0.1.0/docs/_build/html/search.html +125 -0
- embasi-0.1.0/docs/_build/html/searchindex.js +1 -0
- embasi-0.1.0/docs/_build/html/tutorials.html +117 -0
- embasi-0.1.0/docs/codeintegration.rst +22 -0
- embasi-0.1.0/docs/conf.py +35 -0
- embasi-0.1.0/docs/embasi.rst +45 -0
- embasi-0.1.0/docs/explainer.rst +15 -0
- embasi-0.1.0/docs/images/plant_embasi_classes.png +0 -0
- embasi-0.1.0/docs/images/plant_embasi_devroadmap.png +0 -0
- embasi-0.1.0/docs/images/plant_flow.png +0 -0
- embasi-0.1.0/docs/index.rst +26 -0
- embasi-0.1.0/docs/installation.rst +55 -0
- embasi-0.1.0/docs/make.bat +35 -0
- embasi-0.1.0/docs/modules.rst +7 -0
- embasi-0.1.0/docs/plant_flow.png +0 -0
- embasi-0.1.0/docs/tutorials.rst +18 -0
- embasi-0.1.0/embasi/__init__.py +4 -0
- embasi-0.1.0/embasi/asi_default_callbacks.py +126 -0
- embasi-0.1.0/embasi/atoms_embedding_asi.py +669 -0
- embasi-0.1.0/embasi/basis_info.py +109 -0
- embasi-0.1.0/embasi/embedding.py +749 -0
- embasi-0.1.0/embasi/parallel_utils.py +104 -0
- embasi-0.1.0/embasi/roothan_hall_eigensolver.py +85 -0
- embasi-0.1.0/embasi/roothan_hall_eigensolver_scalapack.py +288 -0
- embasi-0.1.0/embasi.egg-info/PKG-INFO +52 -0
- embasi-0.1.0/embasi.egg-info/SOURCES.txt +113 -0
- embasi-0.1.0/embasi.egg-info/dependency_links.txt +1 -0
- embasi-0.1.0/embasi.egg-info/requires.txt +2 -0
- embasi-0.1.0/embasi.egg-info/top_level.txt +1 -0
- embasi-0.1.0/examples/FHIaims/BEA_embed/bea.py +21 -0
- embasi-0.1.0/examples/FHIaims/BEA_embed/truncation_example.py +108 -0
- embasi-0.1.0/examples/FHIaims/BEA_embed/zeolite.xyz +35 -0
- embasi-0.1.0/examples/FHIaims/basis_truncation/decanol.xyz +35 -0
- embasi-0.1.0/examples/FHIaims/basis_truncation/truncation_example.py +151 -0
- embasi-0.1.0/examples/FHIaims/projection_embedding/dimer_meoh_example.py +118 -0
- embasi-0.1.0/examples/eigensolvers/test_pdsyevx.py +19 -0
- embasi-0.1.0/pyproject.toml +28 -0
- embasi-0.1.0/setup.cfg +4 -0
embasi-0.1.0/.gitignore
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embasi-0.1.0/LICENSE
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MIT License
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Copyright (c) 2024 Gabriel A. Bramley
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.
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embasi-0.1.0/PKG-INFO
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Metadata-Version: 2.4
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Name: embasi
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Version: 0.1.0
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Summary: A generalised workflow for QM/QM Embedding
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Author-email: Gabriel Bramley <BramleyG@cardiff.ac.uk>
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License: MIT License
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Copyright (c) 2024 Gabriel A. Bramley
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.
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Project-URL: Homepage, https://github.com/logsdail/EmbASI
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Project-URL: Issues, https://github.com/logsdail/EmbASI/issues
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Classifier: Programming Language :: Python :: 3
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Classifier: License :: OSI Approved :: MIT License
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Classifier: Operating System :: OS Independent
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Requires-Python: >=3.9
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Description-Content-Type: text/markdown
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License-File: LICENSE
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Requires-Dist: ase==3.24.0
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Requires-Dist: asi4py>=1.4.1
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Dynamic: license-file
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# EmbASI
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EmbASI is a python-based wrapper for QM/QM embedding simulations using the ASI (Atomic Simulation Interface). The wrapper handles communication between QM code library calls through C-based callbacks, and imports/exports relevant matices such as density matrices and hamiltonians required for embedding schemes such as Projection-Based Embedding (PbE). Atomic information is communicated through Atomic Simulation Environment (ASE) atoms objects.
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# Supported QM Pakage(s)
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- FHI-aims
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# Requires
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- Python >=3.8
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- ASE <=2.3.1
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- asi4py (Bespoke version currently)
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- Shared-object library for relevant QM driver
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embasi-0.1.0/README.md
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# EmbASI
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EmbASI is a python-based wrapper for QM/QM embedding simulations using the ASI (Atomic Simulation Interface). The wrapper handles communication between QM code library calls through C-based callbacks, and imports/exports relevant matices such as density matrices and hamiltonians required for embedding schemes such as Projection-Based Embedding (PbE). Atomic information is communicated through Atomic Simulation Environment (ASE) atoms objects.
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# Supported QM Pakage(s)
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- FHI-aims
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# Requires
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- Python >=3.8
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- ASE <=2.3.1
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- asi4py (Bespoke version currently)
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- Shared-object library for relevant QM driver
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# Minimal makefile for Sphinx documentation
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#
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# You can set these variables from the command line, and also
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# from the environment for the first two.
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SPHINXOPTS ?=
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SPHINXBUILD ?= sphinx-build
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SOURCEDIR = .
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BUILDDIR = _build
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# Put it first so that "make" without argument is like "make help".
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help:
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@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
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.PHONY: help Makefile
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# Catch-all target: route all unknown targets to Sphinx using the new
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# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS).
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%: Makefile
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@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
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