eegdash 0.4.0.dev171__tar.gz → 0.4.0.dev173__tar.gz

{eegdash-0.4.0.dev171/eegdash.egg-info → eegdash-0.4.0.dev173}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: eegdash
-Version: 0.4.0.dev171
+Version: 0.4.0.dev173
 Summary: EEG data for machine learning
 Author-email: Young Truong <dt.young112@gmail.com>, Arnaud Delorme <adelorme@gmail.com>, Aviv Dotan <avivd220@gmail.com>, Oren Shriki <oren70@gmail.com>, Bruno Aristimunha <b.aristimunha@gmail.com>
 License-Expression: GPL-3.0-only
@@ -29,11 +29,9 @@ Requires-Dist: mne_bids>=0.17.0
 Requires-Dist: numba
 Requires-Dist: numpy
 Requires-Dist: pandas
-Requires-Dist: pybids
 Requires-Dist: pymongo
 Requires-Dist: python-dotenv
 Requires-Dist: s3fs
-Requires-Dist: scipy
 Requires-Dist: tqdm
 Requires-Dist: h5io>=0.2.4
 Requires-Dist: pymatreader
@@ -44,6 +42,7 @@ Requires-Dist: rich
 Provides-Extra: tests
 Requires-Dist: pytest; extra == "tests"
 Requires-Dist: pytest-cov; extra == "tests"
+Requires-Dist: pytest-sugar; extra == "tests"
 Requires-Dist: codecov; extra == "tests"
 Requires-Dist: pytest_cases; extra == "tests"
 Requires-Dist: pytest-benchmark; extra == "tests"
@@ -66,10 +65,13 @@ Requires-Dist: lightgbm; extra == "docs"
 Requires-Dist: plotly; extra == "docs"
 Requires-Dist: nbformat; extra == "docs"
 Requires-Dist: graphviz; extra == "docs"
+Provides-Extra: digestion
+Requires-Dist: pybids; extra == "digestion"
 Provides-Extra: all
 Requires-Dist: eegdash[docs]; extra == "all"
 Requires-Dist: eegdash[dev]; extra == "all"
 Requires-Dist: eegdash[tests]; extra == "all"
+Requires-Dist: eegdash[digestion]; extra == "all"
 Dynamic: license-file
 
 # EEG-Dash

{eegdash-0.4.0.dev171 → eegdash-0.4.0.dev173}/eegdash/__init__.py

@@ -18,4 +18,4 @@ _init_mongo_client()
 
 __all__ = ["EEGDash", "EEGDashDataset", "EEGChallengeDataset", "preprocessing"]
 
-__version__ = "0.4.0.dev171"
+__version__ = "0.4.0.dev173"

{eegdash-0.4.0.dev171 → eegdash-0.4.0.dev173}/eegdash/data_utils.py

@@ -22,10 +22,10 @@ import mne
 import mne_bids
 import numpy as np
 import pandas as pd
-from bids import BIDSLayout
 from joblib import Parallel, delayed
 from mne._fiff.utils import _read_segments_file
 from mne.io import BaseRaw
+from mne.utils.check import _soft_import
 from mne_bids import BIDSPath
 
 from braindecode.datasets import BaseDataset
@@ -348,6 +348,14 @@ class EEGBIDSDataset:
         data_dir=None,  # location of bids dataset
         dataset="",  # dataset name
     ):
+        bids_lib = _soft_import("bids", purpose="digestion of datasets", strict=False)
+
+        if bids_lib is None:
+            raise ImportError(
+                "The 'pybids' package is required to use EEGBIDSDataset. "
+                "Please install it via 'pip install eegdash[digestion]'."
+            )
+
         if data_dir is None or not os.path.exists(data_dir):
             raise ValueError("data_dir must be specified and must exist")
         self.bidsdir = Path(data_dir)
@@ -359,7 +367,7 @@ class EEGBIDSDataset:
             raise AssertionError(
                 f"BIDS directory '{dir_name}' does not correspond to dataset '{self.dataset}'"
             )
-        self.layout = BIDSLayout(data_dir)
+        self.layout = bids_lib.BIDSLayout(data_dir)
 
         # get all recording files in the bids directory
         self.files = self._get_recordings(self.layout)
@@ -379,7 +387,7 @@ class EEGBIDSDataset:
         """
         return self.get_bids_file_attribute("modality", self.files[0]).lower() == "eeg"
 
-    def _get_recordings(self, layout: BIDSLayout) -> list[str]:
+    def _get_recordings(self, layout) -> list[str]:
         """Get a list of all EEG recording files in the BIDS layout."""
         files = []
         for ext, exts in self.RAW_EXTENSIONS.items():

{eegdash-0.4.0.dev171 → eegdash-0.4.0.dev173/eegdash.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: eegdash
-Version: 0.4.0.dev171
+Version: 0.4.0.dev173
 Summary: EEG data for machine learning
 Author-email: Young Truong <dt.young112@gmail.com>, Arnaud Delorme <adelorme@gmail.com>, Aviv Dotan <avivd220@gmail.com>, Oren Shriki <oren70@gmail.com>, Bruno Aristimunha <b.aristimunha@gmail.com>
 License-Expression: GPL-3.0-only
@@ -29,11 +29,9 @@ Requires-Dist: mne_bids>=0.17.0
 Requires-Dist: numba
 Requires-Dist: numpy
 Requires-Dist: pandas
-Requires-Dist: pybids
 Requires-Dist: pymongo
 Requires-Dist: python-dotenv
 Requires-Dist: s3fs
-Requires-Dist: scipy
 Requires-Dist: tqdm
 Requires-Dist: h5io>=0.2.4
 Requires-Dist: pymatreader
@@ -44,6 +42,7 @@ Requires-Dist: rich
 Provides-Extra: tests
 Requires-Dist: pytest; extra == "tests"
 Requires-Dist: pytest-cov; extra == "tests"
+Requires-Dist: pytest-sugar; extra == "tests"
 Requires-Dist: codecov; extra == "tests"
 Requires-Dist: pytest_cases; extra == "tests"
 Requires-Dist: pytest-benchmark; extra == "tests"
@@ -66,10 +65,13 @@ Requires-Dist: lightgbm; extra == "docs"
 Requires-Dist: plotly; extra == "docs"
 Requires-Dist: nbformat; extra == "docs"
 Requires-Dist: graphviz; extra == "docs"
+Provides-Extra: digestion
+Requires-Dist: pybids; extra == "digestion"
 Provides-Extra: all
 Requires-Dist: eegdash[docs]; extra == "all"
 Requires-Dist: eegdash[dev]; extra == "all"
 Requires-Dist: eegdash[tests]; extra == "all"
+Requires-Dist: eegdash[digestion]; extra == "all"
 Dynamic: license-file
 
 # EEG-Dash

{eegdash-0.4.0.dev171 → eegdash-0.4.0.dev173}/eegdash.egg-info/requires.txt

@@ -3,11 +3,9 @@ mne_bids>=0.17.0
 numba
 numpy
 pandas
-pybids
 pymongo
 python-dotenv
 s3fs
-scipy
 tqdm
 h5io>=0.2.4
 pymatreader
@@ -20,11 +18,15 @@ rich
 eegdash[docs]
 eegdash[dev]
 eegdash[tests]
+eegdash[digestion]
 
 [dev]
 pre-commit
 ipykernel
 
+[digestion]
+pybids
+
 [docs]
 sphinx
 sphinx_design
@@ -45,6 +47,7 @@ graphviz
 [tests]
 pytest
 pytest-cov
+pytest-sugar
 codecov
 pytest_cases
 pytest-benchmark

{eegdash-0.4.0.dev171 → eegdash-0.4.0.dev173}/pyproject.toml

@@ -40,11 +40,9 @@ dependencies = [
   "numba",
   "numpy",
   "pandas",
-  "pybids",
   "pymongo",
   "python-dotenv",
   "s3fs",
-  "scipy",
   "tqdm",
   "h5io >= 0.2.4",
   "pymatreader",
@@ -63,6 +61,7 @@ Issues   = "https://github.com/sccn/EEG-Dash-Data/issues"
 tests = [
     'pytest',
     'pytest-cov',
+    'pytest-sugar',
     'codecov',
     'pytest_cases',
     'pytest-benchmark',
@@ -90,10 +89,15 @@ docs = [
   "graphviz",
 ]
 
+digestion = [
+  "pybids",
+]
+
 all = [
   "eegdash[docs]",
   "eegdash[dev]",
   "eegdash[tests]",
+  "eegdash[digestion]",
 ]
 
 [tool.setuptools]