eegdash 0.4.0.dev153__tar.gz → 0.4.0.dev173498563__tar.gz

{eegdash-0.4.0.dev153/eegdash.egg-info → eegdash-0.4.0.dev173498563}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: eegdash
-Version: 0.4.0.dev153
+Version: 0.4.0.dev173498563
 Summary: EEG data for machine learning
 Author-email: Young Truong <dt.young112@gmail.com>, Arnaud Delorme <adelorme@gmail.com>, Aviv Dotan <avivd220@gmail.com>, Oren Shriki <oren70@gmail.com>, Bruno Aristimunha <b.aristimunha@gmail.com>
 License-Expression: GPL-3.0-only

{eegdash-0.4.0.dev153 → eegdash-0.4.0.dev173498563}/docs/source/dataset_summary/bubble.rst

@@ -1,3 +1,5 @@
+.. title:: Dataset landscape
+
 .. rubric:: Dataset landscape
 
 .. raw:: html

{eegdash-0.4.0.dev153 → eegdash-0.4.0.dev173498563}/docs/source/dataset_summary/kde.rst

@@ -1,4 +1,6 @@
-.. rubric:: Participant Distribution by Modality
+.. title:: Participant Distribution by Modality
+
+.. rubric:: Distribution of Sample Sizes Varies by Experimental Modality
 
 .. raw:: html
 

eegdash-0.4.0.dev173498563/docs/source/dataset_summary/sankey.rst

@@ -0,0 +1,20 @@
+.. title:: Dataset flow
+
+.. rubric:: Sankey diagrams of EEGDash Datasets by Population, Modality, and Cognitive Domain
+
+.. raw:: html
+
+   <figure class="eegdash-figure" style="margin: 0 0 1.25rem 0;">
+
+.. raw:: html
+   :file: ../_static/dataset_generated/dataset_sankey.html
+
+.. raw:: html
+
+   <figcaption class="eegdash-caption">
+     Figure: Dataset flow across population, modality, and cognitive domain.
+     Link thickness is proportional to the total number of subjects, and the tooltip
+     reports both subject and dataset counts. Hover and click legend entries to
+     explore specific segments.
+   </figcaption>
+   </figure>

eegdash-0.4.0.dev173498563/docs/source/dataset_summary/table.rst

@@ -0,0 +1,27 @@
+.. title:: EEG Datasets Table
+
+.. rubric:: EEG Datasets Table
+
+The data in EEG-DaSh originates from a collaboration involving 25 laboratories, encompassing 27,053 participants. This extensive collection includes M-EEG data, which is a combination of EEG and MEG signals. The data is sourced from various studies conducted by these labs,
+involving both healthy subjects and clinical populations with conditions such as ADHD, depression, schizophrenia, dementia, autism, and psychosis. Additionally, data spans different mental states like sleep, meditation, and cognitive tasks.
+
+In addition, EEG-DaSh will incorporate a subset of the data converted from `NEMAR <https://nemar.org/>`__, which includes 330 MEEG BIDS-formatted datasets, further expanding the archive with well-curated, standardized neuroelectromagnetic data.
+
+.. raw:: html
+
+   <figure class="eegdash-figure" style="margin: 0 0 1.25rem 0;">
+
+.. raw:: html
+   :file: ../_static/dataset_generated/dataset_summary_table.html
+
+.. raw:: html
+
+   <figcaption class="eegdash-caption">
+     Table: Sortable catalogue of EEG‑DaSh datasets. Use the “Filters” button to open column filters;
+     click a column header to jump directly to a filter pane. The Total row is pinned at the bottom.
+     * means that we use the median value across multiple recordings in the dataset, and empty cells
+     when the metainformation is not extracted yet.
+   </figcaption>
+   </figure>
+
+Pathology, modality, and dataset type now surface as consistent color-coded tags so you can scan the table at a glance.

{eegdash-0.4.0.dev153 → eegdash-0.4.0.dev173498563}/docs/source/dataset_summary.rst

@@ -10,13 +10,11 @@
 
 .. rst-class:: dataset-summary-article
 
-Datasets 
-=========
+Datasets Catalog
+================
 
 To leverage recent and ongoing advancements in large-scale computational methods and to ensure the preservation of scientific data generated from publicly funded research, the EEG-DaSh data archive will create a data-sharing resource for MEEG (EEG, MEG) data contributed by collaborators for machine learning (ML) and deep learning (DL) applications.
 
-The archive is currently still in :bdg-danger:`beta testing` mode, so be kind. 
-
 .. raw:: html
 
    <script src="https://cdn.plot.ly/plotly-3.1.0.min.js"></script>
@@ -27,10 +25,16 @@ The archive is currently still in :bdg-danger:`beta testing` mode, so be kind.
 
       .. include:: dataset_summary/table.rst
 
-   .. tab-item:: Participant KDE
+   .. tab-item:: Participant Distribution
 
       .. include:: dataset_summary/kde.rst
 
-   .. tab-item:: Landscape
+   .. tab-item:: Dataset Flow
+
+      .. include:: dataset_summary/sankey.rst
+
+   .. tab-item:: Scatter of Sample Size vs. Recording Duration
 
       .. include:: dataset_summary/bubble.rst
+
+The archive is currently still in :bdg-danger:`beta testing` mode, so be kind. 

{eegdash-0.4.0.dev153 → eegdash-0.4.0.dev173498563}/docs/source/index.rst

@@ -20,11 +20,14 @@ EEG Dash Homepage
 
 
 .. rst-class:: h4 text-center font-weight-light my-4
-
 The EEG-DaSh data archive will establish a data-sharing resource for MEEG (EEG, MEG) data, enabling 
 large-scale computational advancements to preserve and share scientific data from publicly funded 
 research for machine learning and deep learning applications.
 
+.. rst-class:: text-center
+
+**Note:** The "DaSh" in EEG-DaSh stands for **Data Share**.
+
 The EEG-DaSh data archive is a collaborative effort led by the University of California, San Diego (UCSD) and Ben-Gurion University of the Negev (BGU) and partially funded by the National Science Foundation (NSF). All are welcome to contribute to the https://github.com/sccn/EEGDash project.
 
 The archive is currently still in :bdg-danger:`beta testing` mode, so be kind. 

{eegdash-0.4.0.dev153 → eegdash-0.4.0.dev173498563}/eegdash/__init__.py

@@ -18,4 +18,4 @@ _init_mongo_client()
 
 __all__ = ["EEGDash", "EEGDashDataset", "EEGChallengeDataset", "preprocessing"]
 
-__version__ = "0.4.0.dev153"
+__version__ = "0.4.0.dev173498563"

{eegdash-0.4.0.dev153 → eegdash-0.4.0.dev173498563}/eegdash/dataset/dataset_summary.csv

@@ -198,7 +198,7 @@
 197,ds003751,38,38,1,128,250,19.95,4.71 GB,5057922307,0,ds003751,Healthy,other,Multisensory,Affect
 198,ds003421,80,20,1,257,1000,11.604,76.77 GB,82433418198,0,ds003421,Healthy,10-20,Multisensory,Decision-making
 199,ds002158,117,20,1,,,0.0,428.59 GB,460190030981,0,ds002158,Healthy,10-20,Visual,Affect
-200,ds004951,23,11,1,63,1000,29.563,22.00 GB,23627352274,0,ds004951,?,,Tactile,Learning
+200,ds004951,23,11,1,63,1000,29.563,22.00 GB,23627352274,0,ds004951,,,Tactile,Learning
 201,ds004802,38,38,1,65,"2048,512",0.0,29.34 GB,31504070800,0,ds004802,Other,,Visual,Affect
 202,ds004816,20,20,1,63,1000,0.0,23.31 GB,25028989553,0,ds004816,Healthy,,Visual,Attention
 203,ds005873,2850,125,1,2,256,11935.09,117.21 GB,125851664268,0,,,,,

{eegdash-0.4.0.dev153 → eegdash-0.4.0.dev173498563/eegdash.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: eegdash
-Version: 0.4.0.dev153
+Version: 0.4.0.dev173498563
 Summary: EEG data for machine learning
 Author-email: Young Truong <dt.young112@gmail.com>, Arnaud Delorme <adelorme@gmail.com>, Aviv Dotan <avivd220@gmail.com>, Oren Shriki <oren70@gmail.com>, Bruno Aristimunha <b.aristimunha@gmail.com>
 License-Expression: GPL-3.0-only

{eegdash-0.4.0.dev153 → eegdash-0.4.0.dev173498563}/eegdash.egg-info/SOURCES.txt

@@ -14,6 +14,7 @@ docs/source/api/api_core.rst
 docs/source/api/api_features.rst
 docs/source/dataset_summary/bubble.rst
 docs/source/dataset_summary/kde.rst
+docs/source/dataset_summary/sankey.rst
 docs/source/dataset_summary/table.rst
 docs/source/install/install.rst
 docs/source/install/install_pip.rst

eegdash-0.4.0.dev153/docs/source/dataset_summary/table.rst

@@ -1,174 +0,0 @@
-.. rubric:: EEG Datasets Table
-
-The data in EEG-DaSh originates from a collaboration involving 25 laboratories, encompassing 27,053 participants. This extensive collection includes M-EEG data, which is a combination of EEG and MEG signals. The data is sourced from various studies conducted by these labs,
-involving both healthy subjects and clinical populations with conditions such as ADHD, depression, schizophrenia, dementia, autism, and psychosis. Additionally, data spans different mental states like sleep, meditation, and cognitive tasks.
-
-In addition, EEG-DaSh will incorporate a subset of the data converted from `NEMAR <https://nemar.org/>`__, which includes 330 MEEG BIDS-formatted datasets, further expanding the archive with well-curated, standardized neuroelectromagnetic data.
-
-.. raw:: html
-
-   <figure class="eegdash-figure" style="margin: 0 0 1.25rem 0;">
-
-.. raw:: html
-   :file: ../_static/dataset_generated/dataset_summary_table.html
-
-.. raw:: html
-
-   <figcaption class="eegdash-caption">
-     Table: Sortable catalogue of EEG‑DaSh datasets. Use the “Filters” button to open column filters;
-     click a column header to jump directly to a filter pane. The Total row is pinned at the bottom.
-     * means that we use the median value across multiple recordings in the dataset, and empty cells
-     when the metainformation is not extracted yet.
-   </figcaption>
-   </figure>
-
-Pathology, modality, and dataset type now surface as consistent color-coded tags so you can scan the table at a glance and reuse the same visual language as the model catalog.
-
-.. raw:: html
-
-  <!-- jQuery + DataTables core -->
-  <script src="https://code.jquery.com/jquery-3.7.1.min.js"></script>
-  <link rel="stylesheet" href="https://cdn.datatables.net/v/bm/dt-1.13.4/datatables.min.css"/>
-  <script src="https://cdn.datatables.net/v/bm/dt-1.13.4/datatables.min.js"></script>
-
-  <!-- Buttons + SearchPanes (+ Select required by SearchPanes) -->
-  <link rel="stylesheet" href="https://cdn.datatables.net/buttons/2.4.2/css/buttons.dataTables.min.css">
-  <script src="https://cdn.datatables.net/buttons/2.4.2/js/dataTables.buttons.min.js"></script>
-  <link rel="stylesheet" href="https://cdn.datatables.net/select/1.7.0/css/select.dataTables.min.css">
-  <link rel="stylesheet" href="https://cdn.datatables.net/searchpanes/2.3.1/css/searchPanes.dataTables.min.css">
-  <script src="https://cdn.datatables.net/select/1.7.0/js/dataTables.select.min.js"></script>
-  <script src="https://cdn.datatables.net/searchpanes/2.3.1/js/dataTables.searchPanes.min.js"></script>
-
-  <style>
-    /* Styling for the Total row (placed in tfoot) */
-    table.sd-table tfoot td {
-      font-weight: 600;
-      border-top: 2px solid rgba(0,0,0,0.2);
-      background: #f9fafb;
-      /* Match body cell padding to keep perfect alignment */
-      padding: 8px 10px !important;
-      vertical-align: middle;
-    }
-
-    /* Right-align numeric-like columns (2..8) consistently for body & footer */
-    table.sd-table tbody td:nth-child(n+2),
-    table.sd-table tfoot td:nth-child(n+2) {
-      text-align: right;
-    }
-    /* Keep first column (Dataset/Total) left-aligned */
-    table.sd-table tbody td:first-child,
-    table.sd-table tfoot td:first-child {
-      text-align: left;
-    }
-  </style>
-
-  <script>
-  // Helper: robustly extract values for SearchPanes when needed
-  function tagsArrayFromHtml(html) {
-    if (html == null) return [];
-    // If it's numeric or plain text, just return as a single value
-    if (typeof html === 'number') return [String(html)];
-    if (typeof html === 'string' && html.indexOf('<') === -1) return [html.trim()];
-    // Else parse any .tag elements inside HTML
-    var tmp = document.createElement('div');
-    tmp.innerHTML = html;
-    var tags = Array.from(tmp.querySelectorAll('.tag')).map(function(el){
-      return (el.textContent || '').trim();
-    });
-    return tags.length ? tags : [tmp.textContent.trim()];
-  }
-
-  // Helper: parse human-readable sizes like "4.31 GB" into bytes (number)
-  function parseSizeToBytes(text) {
-    if (!text) return 0;
-    var s = String(text).trim();
-    var m = s.match(/([\d,.]+)\s*(TB|GB|MB|KB|B)/i);
-    if (!m) return 0;
-    var value = parseFloat(m[1].replace(/,/g, ''));
-    var unit = m[2].toUpperCase();
-    var factor = { B:1, KB:1024, MB:1024**2, GB:1024**3, TB:1024**4 }[unit] || 1;
-    return value * factor;
-  }
-
-  $(function () {
-    var $table = $('#datasets-table');
-    if (!$table.length) {
-      return;
-    }
-    if ($.fn.DataTable && $.fn.DataTable.isDataTable($table[0])) {
-      return;
-    }
-
-    // 1) Move the "Total" row into <tfoot> so sorting/filtering never moves it
-    var $tbody = $table.find('tbody');
-    var $total = $tbody.find('tr').filter(function(){
-      return $(this).find('td').eq(0).text().trim() === 'Total';
-    });
-    if ($total.length) {
-      var $tfoot = $table.find('tfoot');
-      if (!$tfoot.length) $tfoot = $('<tfoot/>').appendTo($table);
-      $total.appendTo($tfoot);
-    }
-
-    // 2) Initialize DataTable with SearchPanes button
-    var FILTER_COLS = [1,2,3,4,5,6];
-    // Detect the index of the size column by header text
-    var sizeIdx = (function(){
-      var idx = -1;
-      $table.find('thead th').each(function(i){
-        var t = $(this).text().trim().toLowerCase();
-        if (t === 'size on disk' || t === 'size') idx = i;
-      });
-      return idx;
-    })();
-
-    var table = $table.DataTable({
-      dom: 'Blfrtip',
-      paging: false,
-      searching: true,
-      info: false,
-      language: {
-        search: 'Filter dataset:',
-        searchPanes: { collapse: { 0: 'Filters', _: 'Filters (%d)' } }
-      },
-      buttons: [{
-        extend: 'searchPanes',
-        text: 'Filters',
-        config: { cascadePanes: true, viewTotal: true, layout: 'columns-4', initCollapsed: false }
-      }],
-      columnDefs: (function(){
-        var defs = [
-          { searchPanes: { show: true }, targets: FILTER_COLS }
-        ];
-        if (sizeIdx !== -1) {
-          defs.push({
-            targets: sizeIdx,
-            render: function(data, type) {
-              if (type === 'sort' || type === 'type') {
-                return parseSizeToBytes(data);
-              }
-              return data;
-            }
-          });
-        }
-        return defs;
-      })()
-    });
-
-    // 3) UX: click a header to open the relevant filter pane
-    $table.find('thead th').each(function (i) {
-      if ([1,2,3,4].indexOf(i) === -1) return;
-      $(this).css('cursor','pointer').attr('title','Click to filter this column');
-      $(this).on('click', function () {
-        table.button('.buttons-searchPanes').trigger();
-        setTimeout(function () {
-          var idx = [1,2,3,4].indexOf(i);
-          var $container = $(table.searchPanes.container());
-          var $pane = $container.find('.dtsp-pane').eq(idx);
-          var $title = $pane.find('.dtsp-title');
-          if ($title.length) $title.trigger('click');
-        }, 0);
-      });
-    });
-  });
-  </script>