eegdash 0.3.5.dev77__tar.gz → 0.3.5.dev83__tar.gz

{eegdash-0.3.5.dev77/eegdash.egg-info → eegdash-0.3.5.dev83}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: eegdash
-Version: 0.3.5.dev77
+Version: 0.3.5.dev83
 Summary: EEG data for machine learning
 Author-email: Young Truong <dt.young112@gmail.com>, Arnaud Delorme <adelorme@gmail.com>, Aviv Dotan <avivd220@gmail.com>, Oren Shriki <oren70@gmail.com>, Bruno Aristimunha <b.aristimunha@gmail.com>
 License-Expression: GPL-3.0-only
@@ -54,6 +54,7 @@ Requires-Dist: sphinx_design; extra == "docs"
 Requires-Dist: sphinx_gallery; extra == "docs"
 Requires-Dist: sphinx_rtd_theme; extra == "docs"
 Requires-Dist: pydata-sphinx-theme; extra == "docs"
+Requires-Dist: sphinx-autobuild; extra == "docs"
 Requires-Dist: numpydoc; extra == "docs"
 Requires-Dist: memory_profiler; extra == "docs"
 Requires-Dist: ipython; extra == "docs"
@@ -70,6 +71,7 @@ Requires-Dist: sphinx_design; extra == "all"
 Requires-Dist: sphinx_gallery; extra == "all"
 Requires-Dist: sphinx_rtd_theme; extra == "all"
 Requires-Dist: pydata-sphinx-theme; extra == "all"
+Requires-Dist: sphinx-autobuild; extra == "all"
 Requires-Dist: numpydoc; extra == "all"
 Requires-Dist: memory_profiler; extra == "all"
 Requires-Dist: ipython; extra == "all"

{eegdash-0.3.5.dev77 → eegdash-0.3.5.dev83}/docs/source/dataset_summary.rst

@@ -9,11 +9,16 @@
 
 .. currentmodule:: eegdash.dataset
 
+To leverage recent and ongoing advancements in large-scale computational methods and to ensure the preservation of scientific data generated from publicly funded research, the EEG-DaSh data archive will create a data-sharing resource for MEEG (EEG, MEG) data contributed by collaborators for machine learning (ML) and deep learning (DL) applications.
+
+The archive is currently still in <span style="color: red;">beta testing</span> mode, so be kind. 
+
 EEG Dash Datasets
 ==================
 
+The data in EEG-DaSh originates from a collaboration involving 25 laboratories, encompassing 27,053 participants. This extensive collection includes MEEG data, which is a combination of EEG and MEG signals. The data is sourced from various studies conducted by these labs, involving both healthy subjects and clinical populations with conditions such as ADHD, depression, schizophrenia, dementia, autism, and psychosis. Additionally, data spans different mental states like sleep, meditation, and cognitive tasks. In addition, EEG-DaSh will incorporate a subset of the data converted from NEMAR, which includes 330 MEEG BIDS-formatted datasets, further expanding the archive with well-curated, standardized neuroelectromagnetic data.
 
-Columns definitions:
+Columns definitions for the table below:
    - **dataset**: Name of the dataset.
    - **n_records**: Number of EEG records in the dataset.
    - **n_subjects**: Number of subjects in the dataset.

{eegdash-0.3.5.dev77 → eegdash-0.3.5.dev83}/docs/source/index.rst

@@ -25,6 +25,10 @@ The EEG-DaSh data archive will establish a data-sharing resource for MEEG (EEG,
 large-scale computational advancements to preserve and share scientific data from publicly funded 
 research for machine learning and deep learning applications.
 
+The EEG-DaSh data archive is a collaborative effort led by the University of California, San Diego (UCSD) and Ben-Gurion University of the Negev (BGU) and partially funded by the National Science Foundation (NSF). All are welcome to contribute to the project to the https://github.com/sccn/EEGDash project.
+
+The archive is currently still in <span style="color: red;">beta testing</span> mode, so be kind. 
+
 .. raw:: html
 
     <h2 style="text-align: center;">Institutions</h2>

{eegdash-0.3.5.dev77 → eegdash-0.3.5.dev83}/eegdash/__init__.py

@@ -7,4 +7,4 @@ __init__mongo_client()
 
 __all__ = ["EEGDash", "EEGDashDataset", "EEGChallengeDataset"]
 
-__version__ = "0.3.5.dev77"
+__version__ = "0.3.5.dev83"

{eegdash-0.3.5.dev77 → eegdash-0.3.5.dev83}/eegdash/api.py

@@ -676,6 +676,7 @@ class EEGDashDataset(BaseConcatDataset):
 
         try:
             if records is not None:
+                self.records = records
                 datasets = [
                     EEGDashBaseDataset(
                         record,
@@ -683,16 +684,16 @@ class EEGDashDataset(BaseConcatDataset):
                         self.s3_bucket,
                         **base_dataset_kwargs,
                     )
-                    for record in records
+                    for record in self.records
                 ]
             elif data_dir:
                 # This path loads from a local directory and is not affected by DB query logic
-                if isinstance(data_dir, str):
+                if isinstance(data_dir, str) or isinstance(data_dir, Path):
                     datasets = self.load_bids_dataset(
-                        dataset,
-                        data_dir,
-                        description_fields,
-                        s3_bucket,
+                        dataset=dataset,
+                        data_dir=data_dir,
+                        description_fields=description_fields,
+                        s3_bucket=s3_bucket,
                         **base_dataset_kwargs,
                     )
                 else:
@@ -703,10 +704,10 @@ class EEGDashDataset(BaseConcatDataset):
                     for i, _ in enumerate(data_dir):
                         datasets.extend(
                             self.load_bids_dataset(
-                                dataset[i],
-                                data_dir[i],
-                                description_fields,
-                                s3_bucket,
+                                dataset=dataset[i],
+                                data_dir=data_dir[i],
+                                description_fields=description_fields,
+                                s3_bucket=s3_bucket,
                                 **base_dataset_kwargs,
                             )
                         )
@@ -773,9 +774,9 @@ class EEGDashDataset(BaseConcatDataset):
         """
         datasets: list[EEGDashBaseDataset] = []
 
-        records = self.eeg_dash.find(query, **query_kwargs)
+        self.records = self.eeg_dash.find(query, **query_kwargs)
 
-        for record in records:
+        for record in self.records:
             description = {}
             for field in description_fields:
                 value = self.find_key_in_nested_dict(record, field)
@@ -794,8 +795,8 @@ class EEGDashDataset(BaseConcatDataset):
 
     def load_bids_dataset(
         self,
-        dataset,
-        data_dir,
+        dataset: str,
+        data_dir: str | Path,
         description_fields: list[str],
         s3_bucket: str | None = None,
         **kwargs,

{eegdash-0.3.5.dev77 → eegdash-0.3.5.dev83/eegdash.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: eegdash
-Version: 0.3.5.dev77
+Version: 0.3.5.dev83
 Summary: EEG data for machine learning
 Author-email: Young Truong <dt.young112@gmail.com>, Arnaud Delorme <adelorme@gmail.com>, Aviv Dotan <avivd220@gmail.com>, Oren Shriki <oren70@gmail.com>, Bruno Aristimunha <b.aristimunha@gmail.com>
 License-Expression: GPL-3.0-only
@@ -54,6 +54,7 @@ Requires-Dist: sphinx_design; extra == "docs"
 Requires-Dist: sphinx_gallery; extra == "docs"
 Requires-Dist: sphinx_rtd_theme; extra == "docs"
 Requires-Dist: pydata-sphinx-theme; extra == "docs"
+Requires-Dist: sphinx-autobuild; extra == "docs"
 Requires-Dist: numpydoc; extra == "docs"
 Requires-Dist: memory_profiler; extra == "docs"
 Requires-Dist: ipython; extra == "docs"
@@ -70,6 +71,7 @@ Requires-Dist: sphinx_design; extra == "all"
 Requires-Dist: sphinx_gallery; extra == "all"
 Requires-Dist: sphinx_rtd_theme; extra == "all"
 Requires-Dist: pydata-sphinx-theme; extra == "all"
+Requires-Dist: sphinx-autobuild; extra == "all"
 Requires-Dist: numpydoc; extra == "all"
 Requires-Dist: memory_profiler; extra == "all"
 Requires-Dist: ipython; extra == "all"

{eegdash-0.3.5.dev77 → eegdash-0.3.5.dev83}/eegdash.egg-info/requires.txt

@@ -27,6 +27,7 @@ sphinx_design
 sphinx_gallery
 sphinx_rtd_theme
 pydata-sphinx-theme
+sphinx-autobuild
 numpydoc
 memory_profiler
 ipython
@@ -41,6 +42,7 @@ sphinx_design
 sphinx_gallery
 sphinx_rtd_theme
 pydata-sphinx-theme
+sphinx-autobuild
 numpydoc
 memory_profiler
 ipython

{eegdash-0.3.5.dev77 → eegdash-0.3.5.dev83}/pyproject.toml

@@ -76,6 +76,7 @@ docs = [
   "sphinx_gallery",
   "sphinx_rtd_theme",
   "pydata-sphinx-theme",
+  "sphinx-autobuild",
   "numpydoc",
   "memory_profiler",
   "ipython",
@@ -94,6 +95,7 @@ all = [
   "sphinx_gallery",
   "sphinx_rtd_theme",
   "pydata-sphinx-theme",
+  "sphinx-autobuild",
   "numpydoc",
   "memory_profiler",
   "ipython",