eegdash 0.3.4__tar.gz → 0.3.4.dev70__tar.gz

{eegdash-0.3.4/eegdash.egg-info → eegdash-0.3.4.dev70}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: eegdash
-Version: 0.3.4
+Version: 0.3.4.dev70
 Summary: EEG data for machine learning
 Author-email: Young Truong <dt.young112@gmail.com>, Arnaud Delorme <adelorme@gmail.com>, Aviv Dotan <avivd220@gmail.com>, Oren Shriki <oren70@gmail.com>, Bruno Aristimunha <b.aristimunha@gmail.com>
 License-Expression: GPL-3.0-only
@@ -38,6 +38,7 @@ Requires-Dist: tqdm
 Requires-Dist: xarray
 Requires-Dist: h5io>=0.2.4
 Requires-Dist: pymatreader
+Requires-Dist: tabulate
 Provides-Extra: tests
 Requires-Dist: pytest; extra == "tests"
 Requires-Dist: pytest-cov; extra == "tests"

{eegdash-0.3.4 → eegdash-0.3.4.dev70}/docs/source/conf.py

@@ -96,7 +96,7 @@ html_sidebars = {"api": [], "dataset_summary": [], "installation": []}
 
 
 # -- Extension configurations ------------------------------------------------
-
+autoclass_content = "both"
 
 # Numpydoc
 numpydoc_show_class_members = False

{eegdash-0.3.4 → eegdash-0.3.4.dev70}/eegdash/__init__.py

@@ -7,4 +7,4 @@ __init__mongo_client()
 
 __all__ = ["EEGDash", "EEGDashDataset", "EEGChallengeDataset"]
 
-__version__ = "0.3.4"
+__version__ = "0.3.4.dev70"

{eegdash-0.3.4 → eegdash-0.3.4.dev70}/eegdash/dataset_summary.csv

@@ -1,255 +1,255 @@
-dataset,n_records,n_subjects,n_tasks,nchans_set,sampling_freqs,duration_hours_total
-ds002718,18,18,1,74,250,14.844
-ds005505,1342,136,10,129,500,125.366
-ds004745,6,6,1,,1000,0.0
-ds005514,2885,295,10,129,500,213.008
-ds005512,2320,257,10,129,500,196.205
-ds005510,1227,135,10,129,500,112.464
-ds005511,3100,381,10,"6,129",500,285.629
-ds005509,3326,330,10,129,500,274.559
-ds005508,3342,324,10,129,500,269.281
-ds005507,1812,184,10,129,500,168.649
-ds005506,1405,150,10,129,500,127.896
-ds004854,1,1,1,64,128,0.535
-ds004853,1,1,1,64,128,0.535
-ds004844,68,17,1,64,1024,21.252
-ds004843,92,14,1,64,256,29.834
-ds004842,102,14,1,64,256,20.102
-ds004852,1,1,1,64,128,0.535
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-ds004661,17,17,1,64,128,10.137
-ds004660,42,21,1,32,"2048,512",23.962
-ds004657,119,24,1,64,"1024,8192",27.205
-ds004362,1526,109,1,64,"128,160",48.592
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-ds004635,55,55,1,129,1000,20.068
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-ds004784,6,1,6,128,512,0.518
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-ds003518,137,110,1,64,500,89.888
-ds005207,39,20,1,"6,10,12,14,15,16,17,18","128,250",422.881
-ds005866,60,60,1,,500,15.976
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-ds004347,48,24,1,64,"128,512",6.389
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-ds003846,60,19,1,64,500,24.574
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eegdash-0.3.4.dev70/eegdash/registry.py

@@ -0,0 +1,136 @@
+from __future__ import annotations
+
+from pathlib import Path
+from typing import Any, Dict
+
+import pandas as pd
+from tabulate import tabulate
+
+
+def register_openneuro_datasets(
+    summary_file: str | Path,
+    *,
+    base_class=None,
+    namespace: Dict[str, Any] | None = None,
+    add_to_all: bool = True,
+) -> Dict[str, type]:
+    """Dynamically create dataset classes from a summary file."""
+    if base_class is None:
+        from .api import EEGDashDataset as base_class  # lazy import
+
+    summary_path = Path(summary_file)
+    namespace = namespace if namespace is not None else globals()
+    module_name = namespace.get("__name__", __name__)
+    registered: Dict[str, type] = {}
+
+    df = pd.read_csv(summary_path, comment="#", skip_blank_lines=True)
+    for _, row_series in df.iterrows():
+        row = row_series.tolist()
+        dataset_id = str(row[0]).strip()
+        if not dataset_id:
+            continue
+
+        class_name = dataset_id.upper()
+
+        # avoid zero-arg super() here
+        def make_init(_dataset: str):
+            def __init__(
+                self,
+                cache_dir: str,
+                query: dict | None = None,
+                s3_bucket: str | None = None,
+                **kwargs,
+            ):
+                q = {"dataset": _dataset}
+                if query:
+                    q.update(query)
+                # call base_class.__init__ directly
+                base_class.__init__(
+                    self,
+                    query=q,
+                    cache_dir=cache_dir,
+                    s3_bucket=s3_bucket,
+                    **kwargs,
+                )
+
+            return __init__
+
+        init = make_init(dataset_id)
+
+        doc = f"""Create an instance for OpenNeuro dataset ``{dataset_id}``.
+
+        {markdown_table(row_series)}
+
+        Parameters
+        ----------
+        cache_dir : str
+            Local cache directory.
+        query : dict | None
+            Extra Mongo query merged with ``{{'dataset': '{dataset_id}'}}``.
+        s3_bucket : str | None
+            Optional S3 bucket name.
+        **kwargs
+            Passed through to {base_class.__name__}.
+        """
+
+        init.__doc__ = doc
+
+        cls = type(
+            class_name,
+            (base_class,),
+            {
+                "_dataset": dataset_id,
+                "__init__": init,
+                "__doc__": doc,
+                "__module__": module_name,  #
+            },
+        )
+
+        namespace[class_name] = cls
+        registered[class_name] = cls
+
+        if add_to_all:
+            ns_all = namespace.setdefault("__all__", [])
+            if isinstance(ns_all, list) and class_name not in ns_all:
+                ns_all.append(class_name)
+
+    return registered
+
+
+def markdown_table(row_series: pd.Series) -> str:
+    """Create a reStructuredText grid table from a pandas Series."""
+    if row_series.empty:
+        return ""
+
+    # Prepare the dataframe with user's suggested logic
+    df = (
+        row_series.to_frame()
+        .T.rename(
+            columns={
+                "n_subjects": "#Subj",
+                "nchans_set": "#Chan",
+                "n_tasks": "#Classes",
+                "sampling_freqs": "Freq(Hz)",
+                "duration_hours_total": "Duration(H)",
+            }
+        )
+        .reindex(
+            columns=[
+                "dataset",
+                "#Subj",
+                "#Chan",
+                "#Classes",
+                "Freq(Hz)",
+                "Duration(H)",
+            ]
+        )
+        .infer_objects(copy=False)
+        .fillna("")
+    )
+
+    # Use tabulate for the final rst formatting
+    table = tabulate(df, headers="keys", tablefmt="rst", showindex=False)
+
+    # Indent the table to fit within the admonition block
+    indented_table = "\n".join("    " + line for line in table.split("\n"))
+    return f"\n\n{indented_table}"