ebi-eva-common-pyutils 0.8.0__tar.gz → 0.8.1__tar.gz

{ebi_eva_common_pyutils-0.8.0 → ebi_eva_common_pyutils-0.8.1}/CHANGELOG.md

@@ -2,6 +2,13 @@
 Changelog for ebi_eva_common_pyutils
 ===========================
 
+## 0.8.1 (2026-02-04)
+---------------------
+
+- Remove hard-coded accessioning job name from Spring properties generator
+- Set default readPreference to "primary" for accessioning properties
+
+
 ## 0.8.0 (2025-12-19)
 ---------------------
 

{ebi_eva_common_pyutils-0.8.0/ebi_eva_common_pyutils.egg-info → ebi_eva_common_pyutils-0.8.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: ebi_eva_common_pyutils
-Version: 0.8.0
+Version: 0.8.1
 Summary: EBI EVA - Common Python Utilities
 Home-page: https://github.com/EBIVariation/eva-common-pyutils
 License: Apache

{ebi_eva_common_pyutils-0.8.0 → ebi_eva_common_pyutils-0.8.1/ebi_eva_common_pyutils.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: ebi_eva_common_pyutils
-Version: 0.8.0
+Version: 0.8.1
 Summary: EBI EVA - Common Python Utilities
 Home-page: https://github.com/EBIVariation/eva-common-pyutils
 License: Apache

{ebi_eva_common_pyutils-0.8.0 → ebi_eva_common_pyutils-0.8.1}/ebi_eva_common_pyutils.egg-info/SOURCES.txt

@@ -5,7 +5,7 @@ README.md
 requirements.txt
 setup.cfg
 setup.py
-/tmp/ebi_eva_common_pyutils-v0.8.0-u40n3xv0/gitclone/ebi_eva_internal_pyutils/archive_directory.py
+/tmp/ebi_eva_common_pyutils-v0.8.1-r1lg01ob/gitclone/ebi_eva_internal_pyutils/archive_directory.py
 ebi_eva_common_pyutils/__init__.py
 ebi_eva_common_pyutils/assembly_utils.py
 ebi_eva_common_pyutils/biosamples_communicators.py

{ebi_eva_common_pyutils-0.8.0 → ebi_eva_common_pyutils-0.8.1}/ebi_eva_internal_pyutils/spring_properties.py

@@ -132,16 +132,16 @@ class SpringPropertiesGenerator:
         merge = {**self._common_accessioning_properties(assembly_accession, read_preference, chunk_size), **props}
         return merge
 
-    def get_accessioning_properties(self, *, target_assembly=None, fasta=None, assembly_report=None,
-                                    project_accession=None, aggregation='BASIC', taxonomy_accession=None,
-                                    vcf_file='', output_vcf='', chunk_size=100):
+    def get_accessioning_properties(self, *, read_preference='primary', job_name=None, target_assembly=None, fasta=None,
+                                    assembly_report=None, project_accession=None, aggregation='BASIC',
+                                    taxonomy_accession=None, vcf_file='', output_vcf='', chunk_size=100):
         """Properties for accessioning pipeline."""
         return self._format(
             self._common_accessioning_clustering_properties(assembly_accession=target_assembly,
-                                                            read_preference='secondaryPreferred',
+                                                            read_preference=read_preference,
                                                             chunk_size=chunk_size),
             {
-                'spring.batch.job.names': 'CREATE_SUBSNP_ACCESSION_JOB',
+                'spring.batch.job.names': job_name,
                 'parameters.assemblyReportUrl': self._format_str('file:{0}', assembly_report),
                 'parameters.contigNaming': 'NO_REPLACEMENT',
                 'parameters.fasta': fasta,

{ebi_eva_common_pyutils-0.8.0 → ebi_eva_common_pyutils-0.8.1}/setup.py

@@ -11,7 +11,7 @@ setup(
     name='ebi_eva_common_pyutils',
     scripts=[os.path.join(os.path.dirname(__file__), 'ebi_eva_internal_pyutils', 'archive_directory.py')],
     packages=find_packages(),
-    version='0.8.0',
+    version='0.8.1',
     license='Apache',
     description='EBI EVA - Common Python Utilities',
     url='https://github.com/EBIVariation/eva-common-pyutils',