ebi-eva-common-pyutils 0.7.1__tar.gz → 0.7.2__tar.gz

{ebi_eva_common_pyutils-0.7.1 → ebi_eva_common_pyutils-0.7.2}/CHANGELOG.md

@@ -2,6 +2,13 @@
 Changelog for ebi_eva_common_pyutils
 ===========================
 
+## 0.7.2 (2025-06-19)
+---------------------
+
+- Enable overwrite on existing config path.
+- Update lxml
+
+
 ## 0.7.1 (2025-05-21)
 ---------------------
 

{ebi_eva_common_pyutils-0.7.1 → ebi_eva_common_pyutils-0.7.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: ebi_eva_common_pyutils
-Version: 0.7.1
+Version: 0.7.2
 Summary: EBI EVA - Common Python Utilities
 Home-page: https://github.com/EBIVariation/eva-common-pyutils
 License: Apache

{ebi_eva_common_pyutils-0.7.1 → ebi_eva_common_pyutils-0.7.2}/ebi_eva_common_pyutils/config.py

@@ -2,6 +2,9 @@ import os
 
 import yaml
 
+from ebi_eva_common_pyutils.logger import logging_config as log_cfg
+
+logger = log_cfg.get_logger(__name__)
 
 class Configuration:
     """
@@ -120,6 +123,9 @@ class WritableConfig(Configuration):
         for p in path[:-1]:
             if p not in top_level:
                 top_level[p] = {}
+            elif not isinstance(top_level[p], dict):
+                logger.warning(f'Overwriting existing config path {".".join(path)}')
+                top_level[p] = {}
             top_level = top_level[p]
         top_level[path[-1]] = value
 

{ebi_eva_common_pyutils-0.7.1 → ebi_eva_common_pyutils-0.7.2}/ebi_eva_common_pyutils.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: ebi-eva-common-pyutils
-Version: 0.7.1
+Version: 0.7.2
 Summary: EBI EVA - Common Python Utilities
 Home-page: https://github.com/EBIVariation/eva-common-pyutils
 License: Apache

{ebi_eva_common_pyutils-0.7.1 → ebi_eva_common_pyutils-0.7.2}/ebi_eva_common_pyutils.egg-info/requires.txt

@@ -1,5 +1,5 @@
 requests==2.*
-lxml==4.*,>4.9
+lxml==5.*
 pyyaml==6.*
 cached-property==1.5.*
 retry==0.*,>0.9

{ebi_eva_common_pyutils-0.7.1 → ebi_eva_common_pyutils-0.7.2}/setup.py

@@ -1,19 +1,22 @@
 import os
 from distutils.core import setup
+from os.path import abspath, dirname, join
 
 from setuptools import find_packages
+base_dir = abspath(dirname(__file__))
+requirements_txt = join(base_dir, 'requirements.txt')
+requirements = [l.strip() for l in open(requirements_txt) if l and not l.startswith('#')]
 
 setup(
     name='ebi_eva_common_pyutils',
     scripts=[os.path.join(os.path.dirname(__file__), 'ebi_eva_internal_pyutils', 'archive_directory.py')],
     packages=find_packages(),
-    version='0.7.1',
+    version='0.7.2',
     license='Apache',
     description='EBI EVA - Common Python Utilities',
     url='https://github.com/EBIVariation/eva-common-pyutils',
     keywords=['EBI', 'EVA', 'PYTHON', 'UTILITIES'],
-    install_requires=['requests==2.*', 'lxml>4.9,==4.*', 'pyyaml==6.*', 'cached-property==1.5.*', 'retry>0.9,==0.*',
-                      'openpyxl==3.*'],
+    install_requires=requirements,
     extras_require={'eva-internal': ['psycopg2-binary', 'pymongo', 'networkx<=2.5']},
     classifiers=[
         'Development Status :: 5 - Production/Stable',