ebi-eva-common-pyutils 0.6.9__tar.gz → 0.6.10__tar.gz

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Files changed (45) hide show
  1. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/CHANGELOG.md +6 -0
  2. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/PKG-INFO +1 -1
  3. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/biosamples_communicators.py +7 -1
  4. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils.egg-info/PKG-INFO +1 -1
  5. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/setup.py +1 -1
  6. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/LICENSE +0 -0
  7. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/MANIFEST.in +0 -0
  8. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/README.md +0 -0
  9. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/__init__.py +0 -0
  10. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/assembly/__init__.py +0 -0
  11. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/assembly/assembly.py +0 -0
  12. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/assembly_utils.py +0 -0
  13. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/command_utils.py +0 -0
  14. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/common_utils.py +0 -0
  15. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/config.py +0 -0
  16. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/contig_alias/__init__.py +0 -0
  17. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/contig_alias/contig_alias.py +0 -0
  18. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/ena_utils.py +0 -0
  19. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/file_utils.py +0 -0
  20. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/logger.py +0 -0
  21. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/ncbi_utils.py +0 -0
  22. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/network_utils.py +0 -0
  23. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/reference/__init__.py +0 -0
  24. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/reference/assembly.py +0 -0
  25. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/reference/sequence.py +0 -0
  26. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/taxonomy/__init__.py +0 -0
  27. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/taxonomy/taxonomy.py +0 -0
  28. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/variation/__init__.py +0 -0
  29. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/variation/contig_utils.py +0 -0
  30. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils.egg-info/SOURCES.txt +0 -0
  31. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils.egg-info/dependency_links.txt +0 -0
  32. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils.egg-info/requires.txt +0 -0
  33. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils.egg-info/top_level.txt +0 -0
  34. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_internal_pyutils/__init__.py +0 -0
  35. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_internal_pyutils/archive_directory.py +0 -0
  36. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_internal_pyutils/config_utils.py +0 -0
  37. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_internal_pyutils/metadata_utils.py +0 -0
  38. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_internal_pyutils/mongo_utils.py +0 -0
  39. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_internal_pyutils/mongodb/__init__.py +0 -0
  40. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_internal_pyutils/mongodb/mongo_database.py +0 -0
  41. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_internal_pyutils/nextflow/__init__.py +0 -0
  42. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_internal_pyutils/nextflow/nextflow_pipeline.py +0 -0
  43. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_internal_pyutils/pg_utils.py +0 -0
  44. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_internal_pyutils/spring_properties.py +0 -0
  45. {ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/setup.cfg +0 -0
{ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/CHANGELOG.md RENAMED
@@ -2,6 +2,12 @@
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  Changelog for ebi_eva_common_pyutils
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  ===========================
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+ ## 0.6.10 (2024-08-06)
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+ ----------------------
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+
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+ - Allow text to be returned from biosamples communicators
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+
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+
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  ## 0.6.9 (2024-07-29)
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  ---------------------
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{ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/PKG-INFO RENAMED
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  Metadata-Version: 2.1
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  Name: ebi_eva_common_pyutils
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- Version: 0.6.9
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+ Version: 0.6.10
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  Summary: EBI EVA - Common Python Utilities
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  Home-page: https://github.com/EBIVariation/eva-common-pyutils
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  License: Apache
{ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils/biosamples_communicators.py RENAMED
@@ -103,9 +103,15 @@ class HALCommunicator(AppLogger):
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  url = re.sub('{(' + k + ')(:.*)?}', v, url)
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  if join_url:
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  url += '/' + join_url
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+ text_only = False
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+ if 'text_only' in kwargs and kwargs.get('text_only'):
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+ text_only = kwargs.pop('text_only')
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  # Now query the url
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- json_response = self._req(method, url, **kwargs).json()
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+ response = self._req(method, url, **kwargs)
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+ if text_only:
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+ return response.text
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+ json_response = response.json()
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  # Depaginate the call if requested
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  if all_pages is True:
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  # This depagination code will iterate over all the pages available until the pages comes back without a
{ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/ebi_eva_common_pyutils.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: ebi-eva-common-pyutils
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- Version: 0.6.9
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+ Version: 0.6.10
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  Summary: EBI EVA - Common Python Utilities
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  Home-page: https://github.com/EBIVariation/eva-common-pyutils
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  License: Apache
{ebi_eva_common_pyutils-0.6.9 → ebi_eva_common_pyutils-0.6.10}/setup.py RENAMED
@@ -7,7 +7,7 @@ setup(
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  name='ebi_eva_common_pyutils',
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  scripts=[os.path.join(os.path.dirname(__file__), 'ebi_eva_internal_pyutils', 'archive_directory.py')],
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  packages=find_packages(),
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- version='0.6.9',
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+ version='0.6.10',
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  license='Apache',
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  description='EBI EVA - Common Python Utilities',
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  url='https://github.com/EBIVariation/eva-common-pyutils',