easyscience 0.0.1a0__tar.gz → 0.6.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- easyscience-0.6.0/.gitignore +49 -0
- easyscience-0.6.0/LICENSE +29 -0
- easyscience-0.6.0/PKG-INFO +116 -0
- easyscience-0.6.0/README.md +40 -0
- easyscience-0.6.0/pyproject.toml +160 -0
- easyscience-0.6.0/src/easyscience/Datasets/__init__.py +6 -0
- easyscience-0.6.0/src/easyscience/Datasets/xarray.py +824 -0
- easyscience-0.6.0/src/easyscience/Fitting/Constraints.py +492 -0
- easyscience-0.6.0/src/easyscience/Fitting/DFO_LS.py +288 -0
- easyscience-0.6.0/src/easyscience/Fitting/Fitting.py +473 -0
- easyscience-0.6.0/src/easyscience/Fitting/__init__.py +35 -0
- easyscience-0.6.0/src/easyscience/Fitting/bumps.py +314 -0
- easyscience-0.6.0/src/easyscience/Fitting/fitting_template.py +272 -0
- easyscience-0.6.0/src/easyscience/Fitting/lmfit.py +324 -0
- easyscience-0.6.0/src/easyscience/Objects/Borg.py +48 -0
- easyscience-0.6.0/src/easyscience/Objects/Graph.py +339 -0
- easyscience-0.6.0/src/easyscience/Objects/Groups.py +250 -0
- easyscience-0.6.0/src/easyscience/Objects/Inferface.py +228 -0
- easyscience-0.6.0/src/easyscience/Objects/Job/Analysis.py +21 -0
- easyscience-0.6.0/src/easyscience/Objects/Job/Experiment.py +21 -0
- easyscience-0.6.0/src/easyscience/Objects/Job/Job.py +86 -0
- easyscience-0.6.0/src/easyscience/Objects/Job/Theory.py +24 -0
- easyscience-0.6.0/src/easyscience/Objects/ObjectClasses.py +345 -0
- easyscience-0.6.0/src/easyscience/Objects/Variable.py +863 -0
- easyscience-0.6.0/src/easyscience/Objects/__init__.py +6 -0
- easyscience-0.6.0/src/easyscience/Objects/core.py +134 -0
- easyscience-0.6.0/src/easyscience/Objects/virtual.py +200 -0
- easyscience-0.6.0/src/easyscience/REDIRECT.py +9 -0
- easyscience-0.6.0/src/easyscience/Utils/Exceptions.py +15 -0
- easyscience-0.6.0/src/easyscience/Utils/Hugger/Hugger.py +224 -0
- easyscience-0.6.0/src/easyscience/Utils/Hugger/Property.py +272 -0
- easyscience-0.6.0/src/easyscience/Utils/Hugger/__init__.py +6 -0
- easyscience-0.6.0/src/easyscience/Utils/Logging.py +37 -0
- easyscience-0.6.0/src/easyscience/Utils/UndoRedo.py +491 -0
- easyscience-0.6.0/src/easyscience/Utils/__init__.py +6 -0
- easyscience-0.6.0/src/easyscience/Utils/classTools.py +72 -0
- easyscience-0.6.0/src/easyscience/Utils/classUtils.py +97 -0
- easyscience-0.6.0/src/easyscience/Utils/decorators.py +103 -0
- easyscience-0.6.0/src/easyscience/Utils/io/__init__.py +6 -0
- easyscience-0.6.0/src/easyscience/Utils/io/dict.py +128 -0
- easyscience-0.6.0/src/easyscience/Utils/io/json.py +171 -0
- easyscience-0.6.0/src/easyscience/Utils/io/star.py +520 -0
- easyscience-0.6.0/src/easyscience/Utils/io/template.py +302 -0
- easyscience-0.6.0/src/easyscience/Utils/io/xml.py +177 -0
- easyscience-0.6.0/src/easyscience/Utils/string.py +48 -0
- easyscience-0.6.0/src/easyscience/Utils/typing.py +14 -0
- easyscience-0.6.0/src/easyscience/__init__.py +18 -0
- easyscience-0.6.0/src/easyscience/__version__.py +1 -0
- easyscience-0.6.0/src/easyscience/models/__init__.py +6 -0
- easyscience-0.6.0/src/easyscience/models/polynomial.py +102 -0
- easyscience-0.0.1a0/PKG-INFO +0 -5
- easyscience-0.0.1a0/easyscience.egg-info/PKG-INFO +0 -5
- easyscience-0.0.1a0/easyscience.egg-info/SOURCES.txt +0 -6
- easyscience-0.0.1a0/easyscience.egg-info/dependency_links.txt +0 -1
- easyscience-0.0.1a0/easyscience.egg-info/top_level.txt +0 -1
- easyscience-0.0.1a0/pyproject.toml +0 -7
- easyscience-0.0.1a0/setup.cfg +0 -4
- {easyscience-0.0.1a0/easyscience → easyscience-0.6.0/src/easyscience/Objects/Job}/__init__.py +0 -0
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# Misc
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BSD 3-Clause License
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Copyright (c) 2024, Easyscience contributors (https://github.com/EasyScience)
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All rights reserved.
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Redistribution and use in source and binary forms, with or without
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modification, are permitted provided that the following conditions are met:
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list of conditions and the following disclaimer.
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2. Redistributions in binary form must reproduce the above copyright notice,
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this list of conditions and the following disclaimer in the documentation
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and/or other materials provided with the distribution.
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3. Neither the name of the copyright holder nor the names of its
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contributors may be used to endorse or promote products derived from
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this software without specific prior written permission.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
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FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
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OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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Metadata-Version: 2.1
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Name: EasyScience
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Version: 0.6.0
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Summary: Generic logic for easyScience libraries
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Project-URL: homepage, https://docs.easyscience.org
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Project-URL: documentation, https://docs.easyscience.org
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Author: EasyScience contributors
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License: BSD 3-Clause License
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Copyright (c) 2024, Easyscience contributors (https://github.com/EasyScience)
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All rights reserved.
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Redistribution and use in source and binary forms, with or without
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list of conditions and the following disclaimer.
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2. Redistributions in binary form must reproduce the above copyright notice,
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this list of conditions and the following disclaimer in the documentation
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and/or other materials provided with the distribution.
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3. Neither the name of the copyright holder nor the names of its
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contributors may be used to endorse or promote products derived from
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this software without specific prior written permission.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
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FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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License-File: LICENSE
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Classifier: Development Status :: 3 - Alpha
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Classifier: License :: OSI Approved :: BSD License
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Classifier: Operating System :: OS Independent
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Classifier: Programming Language :: Python :: 3
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Classifier: Programming Language :: Python :: 3 :: Only
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Classifier: Programming Language :: Python :: 3.8
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Classifier: Programming Language :: Python :: 3.9
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Classifier: Programming Language :: Python :: 3.10
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Classifier: Programming Language :: Python :: 3.11
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Classifier: Programming Language :: Python :: 3.12
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Classifier: Topic :: Scientific/Engineering
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Description-Content-Type: text/markdown
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[](CODE_OF_CONDUCT.md)
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[](https://pypi.python.org/pypi/EasyScience)
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[](LICENSE)
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# Easyscience
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## About
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EasyScience package is the foundation of the EasyScience family of projects, providing the building blocks for libraries and applications
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which aim to make scientific data simulation and analysis easier.
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## Install
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**EasyScience** can be downloaded using pip:
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```pip install easyscience```
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Or direct from the repository:
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```pip install https://github.com/easyScience/EasyScience```
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## Test
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## Documentation
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Documentation can be found at:
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[https://easyScience.github.io/EasyScience](https://easyScience.github.io/EasyScience)
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## Contributing
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We absolutely welcome contributions. **EasyScience** is maintained by the ESS and on a volunteer basis and thus we need to foster a community that can support user questions and develop new features to make this software a useful tool for all users while encouraging every member of the community to share their ideas.
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## License
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While **EasyScience** is under the BSD-3 license, DFO_LS is subject to the GPL license.
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[](CODE_OF_CONDUCT.md)
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[](https://pypi.python.org/pypi/EasyScience)
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# Easyscience
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## About
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EasyScience package is the foundation of the EasyScience family of projects, providing the building blocks for libraries and applications
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## Test
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## Documentation
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[https://easyScience.github.io/EasyScience](https://easyScience.github.io/EasyScience)
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## Contributing
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## License
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description = "Generic logic for easyScience libraries"
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readme = "README.md"
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authors = [{name = "EasyScience contributors"}]
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license = { file = "LICENSE" }
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"Programming Language :: Python :: 3.9",
|
|
26
|
+
"Programming Language :: Python :: 3.10",
|
|
27
|
+
"Programming Language :: Python :: 3.11",
|
|
28
|
+
"Programming Language :: Python :: 3.12",
|
|
29
|
+
"Development Status :: 3 - Alpha"
|
|
30
|
+
]
|
|
31
|
+
requires-python = ">=3.8,<3.12"
|
|
32
|
+
dependencies = [
|
|
33
|
+
"asteval",
|
|
34
|
+
"bumps",
|
|
35
|
+
"DFO-LS",
|
|
36
|
+
"lmfit",
|
|
37
|
+
"numpy",
|
|
38
|
+
"pint",
|
|
39
|
+
"uncertainties",
|
|
40
|
+
"xarray"
|
|
41
|
+
]
|
|
42
|
+
|
|
43
|
+
[project.optional-dependencies]
|
|
44
|
+
dev = [
|
|
45
|
+
"build",
|
|
46
|
+
"codecov",
|
|
47
|
+
"flake8",
|
|
48
|
+
"matplotlib",
|
|
49
|
+
"pytest",
|
|
50
|
+
"pytest-cov",
|
|
51
|
+
"ruff",
|
|
52
|
+
"tox-gh-actions"
|
|
53
|
+
]
|
|
54
|
+
docs = [
|
|
55
|
+
"doc8",
|
|
56
|
+
"readme-renderer",
|
|
57
|
+
"Sphinx",
|
|
58
|
+
"sphinx-rtd-theme",
|
|
59
|
+
"sphinx-autodoc-typehints",
|
|
60
|
+
"sphinx-gallery",
|
|
61
|
+
"toml"
|
|
62
|
+
]
|
|
63
|
+
|
|
64
|
+
[project.urls]
|
|
65
|
+
homepage = "https://docs.easyscience.org"
|
|
66
|
+
documentation = "https://docs.easyscience.org"
|
|
67
|
+
|
|
68
|
+
[tool.hatch.version]
|
|
69
|
+
path = "src/easyscience/__version__.py"
|
|
70
|
+
|
|
71
|
+
[tool.hatch.metadata]
|
|
72
|
+
allow-direct-references = true
|
|
73
|
+
|
|
74
|
+
[tool.hatch.build.targets.sdist]
|
|
75
|
+
packages = ["src"]
|
|
76
|
+
|
|
77
|
+
[tool.hatch.build.targets.wheel]
|
|
78
|
+
packages = ["src/easyscience"]
|
|
79
|
+
|
|
80
|
+
[tool.coverage.run]
|
|
81
|
+
source = ["src/easyscience"]
|
|
82
|
+
|
|
83
|
+
[tool.github.info]
|
|
84
|
+
organization = 'easyScience'
|
|
85
|
+
repo = "easyscience"
|
|
86
|
+
|
|
87
|
+
[tool.ruff]
|
|
88
|
+
line-length = 127
|
|
89
|
+
exclude = [
|
|
90
|
+
"docs",
|
|
91
|
+
"examples_old",
|
|
92
|
+
"tests"
|
|
93
|
+
]
|
|
94
|
+
|
|
95
|
+
[tool.ruff.format]
|
|
96
|
+
quote-style = "single"
|
|
97
|
+
|
|
98
|
+
[tool.ruff.per-file-ignores]
|
|
99
|
+
# allow asserts in test files
|
|
100
|
+
"*test_*.py" = ["S101"]
|
|
101
|
+
|
|
102
|
+
[tool.ruff.lint]
|
|
103
|
+
ignore-init-module-imports = true
|
|
104
|
+
select = [
|
|
105
|
+
# flake8 settings from existing CI setup
|
|
106
|
+
"E9", "F63", "F7", "F82",
|
|
107
|
+
# Code should be polished to fulfill all cases below
|
|
108
|
+
# https://docs.astral.sh/ruff/rules/
|
|
109
|
+
# pycodestyle
|
|
110
|
+
"E",
|
|
111
|
+
# Pyflakes
|
|
112
|
+
"F",
|
|
113
|
+
# pyupgrade
|
|
114
|
+
# "UP",
|
|
115
|
+
# flake8-bugbear
|
|
116
|
+
# "B",
|
|
117
|
+
# flake8-simplify
|
|
118
|
+
# "SIM",
|
|
119
|
+
# isort
|
|
120
|
+
"I",
|
|
121
|
+
# flake8-bandit
|
|
122
|
+
"S",
|
|
123
|
+
]
|
|
124
|
+
|
|
125
|
+
[tool.ruff.lint.isort]
|
|
126
|
+
force-single-line = true
|
|
127
|
+
|
|
128
|
+
[tool.tox]
|
|
129
|
+
legacy_tox_ini = """
|
|
130
|
+
[tox]
|
|
131
|
+
isolated_build = True
|
|
132
|
+
envlist = py{3.8,3.9,3.10,3.11,3.12}
|
|
133
|
+
[gh-actions]
|
|
134
|
+
python =
|
|
135
|
+
3.8: py38
|
|
136
|
+
3.9: py39
|
|
137
|
+
3.10: py310
|
|
138
|
+
3.11: py311
|
|
139
|
+
3.12: py312
|
|
140
|
+
[gh-actions:env]
|
|
141
|
+
PLATFORM =
|
|
142
|
+
ubuntu-latest: linux
|
|
143
|
+
macos-latest: macos
|
|
144
|
+
windows-latest: windows
|
|
145
|
+
[testenv]
|
|
146
|
+
passenv =
|
|
147
|
+
CI
|
|
148
|
+
GITHUB_ACTIONS
|
|
149
|
+
GITHUB_ACTION
|
|
150
|
+
GITHUB_REF
|
|
151
|
+
GITHUB_REPOSITORY
|
|
152
|
+
GITHUB_HEAD_REF
|
|
153
|
+
GITHUB_RUN_ID
|
|
154
|
+
GITHUB_SHA
|
|
155
|
+
COVERAGE_FILE
|
|
156
|
+
deps = coverage
|
|
157
|
+
commands =
|
|
158
|
+
pip install -e '.[dev]'
|
|
159
|
+
pytest --cov --cov-report=xml
|
|
160
|
+
"""
|
|
@@ -0,0 +1,6 @@
|
|
|
1
|
+
# SPDX-FileCopyrightText: 2023 EasyScience contributors <core@easyscience.software>
|
|
2
|
+
# SPDX-License-Identifier: BSD-3-Clause
|
|
3
|
+
# © 2021-2023 Contributors to the EasyScience project <https://github.com/easyScience/EasyScience
|
|
4
|
+
|
|
5
|
+
__author__ = "github.com/wardsimon"
|
|
6
|
+
__version__ = "0.1.0"
|