easyreflectometry 1.2.0__tar.gz → 1.3.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (53) hide show
  1. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/PKG-INFO +1 -1
  2. easyreflectometry-1.3.0/src/easyreflectometry/__version__.py +1 -0
  3. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/calculators/refl1d/wrapper.py +2 -2
  4. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/calculators/refnx/wrapper.py +2 -2
  5. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/calculators/wrapper_base.py +2 -2
  6. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/model/__init__.py +2 -2
  7. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/model/model.py +4 -4
  8. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/model/resolution_functions.py +4 -4
  9. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/project.py +2 -2
  10. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/summary/summary.py +1 -1
  11. easyreflectometry-1.2.0/src/easyreflectometry/__version__.py +0 -1
  12. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/.gitignore +0 -0
  13. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/AUTHORS.rst +0 -0
  14. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/LICENSE +0 -0
  15. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/README.md +0 -0
  16. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/pyproject.toml +0 -0
  17. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/__init__.py +0 -0
  18. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/calculators/__init__.py +0 -0
  19. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/calculators/bornagain/calculator.py +0 -0
  20. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/calculators/bornagain/wrapper.py +0 -0
  21. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/calculators/calculator_base.py +0 -0
  22. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/calculators/factory.py +0 -0
  23. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/calculators/refl1d/calculator.py +0 -0
  24. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/calculators/refnx/calculator.py +0 -0
  25. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/data/__init__.py +0 -0
  26. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/data/data_store.py +0 -0
  27. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/data/measurement.py +0 -0
  28. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/fitting.py +0 -0
  29. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/main.py +0 -0
  30. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/model/model_collection.py +0 -0
  31. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/plot.py +0 -0
  32. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/sample/__init__.py +0 -0
  33. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/sample/assemblies/base_assembly.py +0 -0
  34. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/sample/assemblies/gradient_layer.py +0 -0
  35. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/sample/assemblies/multilayer.py +0 -0
  36. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/sample/assemblies/repeating_multilayer.py +0 -0
  37. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/sample/assemblies/surfactant_layer.py +0 -0
  38. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/sample/base_core.py +0 -0
  39. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/sample/collections/base_collection.py +0 -0
  40. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/sample/collections/layer_collection.py +0 -0
  41. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/sample/collections/material_collection.py +0 -0
  42. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/sample/collections/sample.py +0 -0
  43. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/sample/elements/layers/layer.py +0 -0
  44. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/sample/elements/layers/layer_area_per_molecule.py +0 -0
  45. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/sample/elements/materials/material.py +0 -0
  46. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/sample/elements/materials/material_density.py +0 -0
  47. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/sample/elements/materials/material_mixture.py +0 -0
  48. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/sample/elements/materials/material_solvated.py +0 -0
  49. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/special/calculations.py +0 -0
  50. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/special/parsing.py +0 -0
  51. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/summary/__init__.py +0 -0
  52. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/summary/html_templates.py +0 -0
  53. {easyreflectometry-1.2.0 → easyreflectometry-1.3.0}/src/easyreflectometry/utils.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
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  Name: easyreflectometry
3
- Version: 1.2.0
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+ Version: 1.3.0
4
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  Summary: A reflectometry python package built on the EasyScience framework.
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  Project-URL: homepage, https://docs.easyreflectometry.org
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  Project-URL: documentation, https://docs.easyreflectometry.org
@@ -0,0 +1 @@
1
+ __version__ = '1.3.0'
@@ -6,7 +6,7 @@ import numpy as np
6
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  from refl1d import model
7
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  from refl1d import names
8
8
 
9
- from easyreflectometry.model import PercentageFhwm
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+ from easyreflectometry.model import PercentageFwhm
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10
 
11
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  from ..wrapper_base import WrapperBase
12
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@@ -157,7 +157,7 @@ class Refl1dWrapper(WrapperBase):
157
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  sample = _build_sample(self.storage, model_name)
158
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  dq_array = self._resolution_function.smearing(q_array)
159
159
 
160
- if isinstance(self._resolution_function, PercentageFhwm):
160
+ if isinstance(self._resolution_function, PercentageFwhm):
161
161
  # Get percentage of Q and change from sigma to FWHM
162
162
  dq_array = dq_array * q_array / 100 / (2 * np.sqrt(2 * np.log(2)))
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@@ -5,7 +5,7 @@ from typing import Tuple
5
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  import numpy as np
6
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  from refnx import reflect
7
7
 
8
- from easyreflectometry.model import PercentageFhwm
8
+ from easyreflectometry.model import PercentageFwhm
9
9
 
10
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  from ..wrapper_base import WrapperBase
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@@ -143,7 +143,7 @@ class RefnxWrapper(WrapperBase):
143
143
  )
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145
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  dq_vector = self._resolution_function.smearing(q_array)
146
- if isinstance(self._resolution_function, PercentageFhwm):
146
+ if isinstance(self._resolution_function, PercentageFwhm):
147
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  # FWHM Percentage resolution is constant given as
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148
  # For a constant resolution percentage refnx supports to pass a scalar value rather than a vector
149
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  dq_vector = dq_vector[0]
@@ -2,7 +2,7 @@ from abc import abstractmethod
2
2
 
3
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  import numpy as np
4
4
 
5
- from easyreflectometry.model import PercentageFhwm
5
+ from easyreflectometry.model import PercentageFwhm
6
6
  from easyreflectometry.model import ResolutionFunction
7
7
 
8
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@@ -16,7 +16,7 @@ class WrapperBase:
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  'item': {},
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  'model': {},
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  }
19
- self._resolution_function = PercentageFhwm()
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+ self._resolution_function = PercentageFwhm()
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20
 
21
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  def reset_storage(self):
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  """Reset the storage area to blank."""
@@ -1,12 +1,12 @@
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  from .model import Model
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  from .model_collection import ModelCollection
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  from .resolution_functions import LinearSpline
4
- from .resolution_functions import PercentageFhwm
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+ from .resolution_functions import PercentageFwhm
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5
  from .resolution_functions import ResolutionFunction
6
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7
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  __all__ = (
8
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  LinearSpline,
9
- PercentageFhwm,
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+ PercentageFwhm,
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  ResolutionFunction,
11
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  Model,
12
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  ModelCollection,
@@ -17,7 +17,7 @@ from easyreflectometry.sample import Sample
17
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  from easyreflectometry.utils import get_as_parameter
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  from easyreflectometry.utils import yaml_dump
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19
 
20
- from .resolution_functions import PercentageFhwm
20
+ from .resolution_functions import PercentageFwhm
21
21
  from .resolution_functions import ResolutionFunction
22
22
 
23
23
  DEFAULTS = {
@@ -71,7 +71,7 @@ class Model(BaseObj):
71
71
  :param scale: Scaling factor of profile.
72
72
  :param background: Linear background magnitude.
73
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  :param name: Name of the model, defaults to 'EasyModel'.
74
- :param resolution_function: Resolution function, defaults to PercentageFhwm.
74
+ :param resolution_function: Resolution function, defaults to PercentageFwhm.
75
75
  :param interface: Calculator interface, defaults to `None`.
76
76
 
77
77
  """
@@ -81,7 +81,7 @@ class Model(BaseObj):
81
81
  if sample is None:
82
82
  sample = Sample(interface=interface)
83
83
  if resolution_function is None:
84
- resolution_function = PercentageFhwm(DEFAULTS['resolution']['value'])
84
+ resolution_function = PercentageFwhm(DEFAULTS['resolution']['value'])
85
85
 
86
86
  scale = get_as_parameter('scale', scale, DEFAULTS)
87
87
  background = get_as_parameter('background', background, DEFAULTS)
@@ -168,7 +168,7 @@ class Model(BaseObj):
168
168
  @property
169
169
  def _dict_repr(self) -> dict[str, dict[str, str]]:
170
170
  """A simplified dict representation."""
171
- if isinstance(self._resolution_function, PercentageFhwm):
171
+ if isinstance(self._resolution_function, PercentageFwhm):
172
172
  resolution_value = self._resolution_function.as_dict()['constant']
173
173
  resolution = f'{resolution_value} %'
174
174
  else:
@@ -26,14 +26,14 @@ class ResolutionFunction:
26
26
 
27
27
  @classmethod
28
28
  def from_dict(cls, data: dict) -> ResolutionFunction:
29
- if data['smearing'] == 'PercentageFhwm':
30
- return PercentageFhwm(data['constant'])
29
+ if data['smearing'] == 'PercentageFwhm':
30
+ return PercentageFwhm(data['constant'])
31
31
  if data['smearing'] == 'LinearSpline':
32
32
  return LinearSpline(data['q_data_points'], data['fwhm_values'])
33
33
  raise ValueError('Unknown resolution function type')
34
34
 
35
35
 
36
- class PercentageFhwm(ResolutionFunction):
36
+ class PercentageFwhm(ResolutionFunction):
37
37
  def __init__(self, constant: Union[None, float] = None):
38
38
  if constant is None:
39
39
  constant = DEFAULT_RESOLUTION_FWHM_PERCENTAGE
@@ -45,7 +45,7 @@ class PercentageFhwm(ResolutionFunction):
45
45
  def as_dict(
46
46
  self, skip: Optional[List[str]] = None
47
47
  ) -> dict[str, str]: # skip is kept for consistency of the as_dict signature
48
- return {'smearing': 'PercentageFhwm', 'constant': self.constant}
48
+ return {'smearing': 'PercentageFwhm', 'constant': self.constant}
49
49
 
50
50
 
51
51
  class LinearSpline(ResolutionFunction):
@@ -21,7 +21,7 @@ from easyreflectometry.fitting import MultiFitter
21
21
  from easyreflectometry.model import LinearSpline
22
22
  from easyreflectometry.model import Model
23
23
  from easyreflectometry.model import ModelCollection
24
- from easyreflectometry.model import PercentageFhwm
24
+ from easyreflectometry.model import PercentageFwhm
25
25
  from easyreflectometry.sample import Layer
26
26
  from easyreflectometry.sample import Material
27
27
  from easyreflectometry.sample import MaterialCollection
@@ -266,7 +266,7 @@ class Project:
266
266
 
267
267
  def sample_data_for_model_at_index(self, index: int = 0, q_range: Optional[np.array] = None) -> DataSet1D:
268
268
  original_resolution_function = self.models[index].resolution_function
269
- self.models[index].resolution_function = PercentageFhwm(0)
269
+ self.models[index].resolution_function = PercentageFwhm(0)
270
270
  reflectivity_data = self.model_data_for_model_at_index(index, q_range)
271
271
  self.models[index].resolution_function = original_resolution_function
272
272
 
@@ -144,7 +144,7 @@ class Summary:
144
144
  experiment_name = experiment.name
145
145
  num_data_points = len(experiment.x)
146
146
  resolution_function = self._project.models[idx].resolution_function.as_dict()['smearing']
147
- if resolution_function == 'PercentageFhwm':
147
+ if resolution_function == 'PercentageFwhm':
148
148
  precentage = self._project.models[idx].resolution_function.as_dict()['constant']
149
149
  resolution_function = f'{resolution_function} {precentage}%'
150
150
  range_min = min(experiment.y)
@@ -1 +0,0 @@
1
- __version__ = '1.2.0'