easylink 0.1.4__tar.gz → 0.1.6__tar.gz

{easylink-0.1.4 → easylink-0.1.6}/CHANGELOG.rst

@@ -1,4 +1,12 @@
-**0.1.4 - 2/18/25**
+**0.1.6 - 2/21/25**
+
+ - Move test dictionaries to yaml files
+
+**0.1.5 - 2/20/25**
+
+ - Fix handling of templated steps when no looping or parallelism is requested
+
+**0.1.4 - 2/20/25**
 
  - Implement duplicate_template_step method on TemplatedStep class
 

{easylink-0.1.4 → easylink-0.1.6}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: easylink
-Version: 0.1.4
+Version: 0.1.6
 Summary: Research repository for the EasyLink ER ecosystem project.
 Home-page: https://github.com/ihmeuw/easylink
 Author: The EasyLink developers

easylink-0.1.6/docs/source/api_reference/pipeline_schema_constants/testing.rst

@@ -0,0 +1 @@
+.. automodule:: easylink.pipeline_schema_constants.testing

easylink-0.1.6/src/easylink/_version.py

@@ -0,0 +1 @@
+__version__ = "0.1.6"

{easylink-0.1.4 → easylink-0.1.6}/src/easylink/configuration.py

@@ -97,7 +97,7 @@ class Config(LayeredConfigTree):
     def __init__(
         self,
         config_params: dict[str, Any],
-        potential_schemas: list[PipelineSchema] | PipelineSchema = PIPELINE_SCHEMAS,
+        potential_schemas: PipelineSchema | list[PipelineSchema] = PIPELINE_SCHEMAS,
     ) -> None:
         super().__init__(layers=["initial_data", "default", "user_configured"])
         self.update(DEFAULT_ENVIRONMENT, layer="default")

easylink-0.1.6/src/easylink/pipeline_schema_constants/__init__.py

@@ -0,0 +1,12 @@
+from easylink.pipeline_schema_constants import development, testing
+
+ALLOWED_SCHEMA_PARAMS = {
+    "development": development.SCHEMA_PARAMS,
+}
+
+TESTING_SCHEMA_PARAMS = {
+    "integration": testing.SINGLE_STEP_SCHEMA_PARAMS,
+    "combine_bad_topology": testing.BAD_COMBINED_TOPOLOGY_SCHEMA_PARAMS,
+    "combine_bad_implementation_names": testing.BAD_COMBINED_TOPOLOGY_SCHEMA_PARAMS,
+    "nested_templated_steps": testing.NESTED_TEMPLATED_STEPS_SCHEMA_PARAMS,
+}

easylink-0.1.4/src/easylink/pipeline_schema_constants/tests.py → easylink-0.1.6/src/easylink/pipeline_schema_constants/testing.py

@@ -11,7 +11,14 @@ from easylink.graph_components import (
     OutputSlot,
     OutputSlotMapping,
 )
-from easylink.step import HierarchicalStep, InputStep, LoopStep, OutputStep, Step
+from easylink.step import (
+    HierarchicalStep,
+    InputStep,
+    LoopStep,
+    OutputStep,
+    ParallelStep,
+    Step,
+)
 from easylink.utilities.validation_utils import validate_input_file_dummy
 
 SINGLE_STEP_NODES = [
@@ -128,3 +135,85 @@ BAD_COMBINED_TOPOLOGY_NODES = [
 ]
 
 BAD_COMBINED_TOPOLOGY_SCHEMA_PARAMS = (BAD_COMBINED_TOPOLOGY_NODES, SINGLE_STEP_EDGES)
+
+
+NESTED_TEMPLATED_STEPS_NODES = [
+    InputStep(),
+    LoopStep(
+        template_step=ParallelStep(
+            template_step=HierarchicalStep(
+                step_name="step_1",
+                input_slots=[
+                    InputSlot(
+                        name="step_1_main_input",
+                        env_var="DUMMY_CONTAINER_MAIN_INPUT_FILE_PATHS",
+                        validator=validate_input_file_dummy,
+                    ),
+                ],
+                output_slots=[OutputSlot("step_1_main_output")],
+                nodes=[
+                    Step(
+                        step_name="step_1a",
+                        input_slots=[
+                            InputSlot(
+                                name="step_1a_main_input",
+                                env_var="DUMMY_CONTAINER_MAIN_INPUT_FILE_PATHS",
+                                validator=validate_input_file_dummy,
+                            ),
+                        ],
+                        output_slots=[OutputSlot("step_1a_main_output")],
+                    ),
+                    Step(
+                        step_name="step_1b",
+                        input_slots=[
+                            InputSlot(
+                                name="step_1b_main_input",
+                                env_var="DUMMY_CONTAINER_MAIN_INPUT_FILE_PATHS",
+                                validator=validate_input_file_dummy,
+                            ),
+                        ],
+                        output_slots=[OutputSlot("step_1b_main_output")],
+                    ),
+                ],
+                edges=[
+                    EdgeParams(
+                        source_node="step_1a",
+                        target_node="step_1b",
+                        output_slot="step_1a_main_output",
+                        input_slot="step_1b_main_input",
+                    ),
+                ],
+                input_slot_mappings=[
+                    InputSlotMapping(
+                        parent_slot="step_1_main_input",
+                        child_node="step_1a",
+                        child_slot="step_1a_main_input",
+                    ),
+                ],
+                output_slot_mappings=[
+                    OutputSlotMapping(
+                        parent_slot="step_1_main_output",
+                        child_node="step_1b",
+                        child_slot="step_1b_main_output",
+                    ),
+                ],
+            ),
+        ),
+        self_edges=[
+            EdgeParams(
+                source_node="step_1",
+                target_node="step_1",
+                output_slot="step_1_main_output",
+                input_slot="step_1_main_input",
+            ),
+        ],
+    ),
+    OutputStep(
+        input_slots=[
+            InputSlot(name="result", env_var=None, validator=validate_input_file_dummy)
+        ],
+    ),
+]
+
+
+NESTED_TEMPLATED_STEPS_SCHEMA_PARAMS = (NESTED_TEMPLATED_STEPS_NODES, SINGLE_STEP_EDGES)

{easylink-0.1.4 → easylink-0.1.6}/src/easylink/step.py

@@ -282,6 +282,17 @@ class Step:
     ) -> None:
         """Sets the configuration state for this ``Step``.
 
+        The so-called 'configuration state' for a given ``Step`` is backed up by
+        a :class:`ConfigurationState` class and is assigned to its :attr:`_configuration_state`
+        attribute. There are two possible ``ConfigurationStates``:
+        :class:`LeafConfigurationState` and :class:`NonLeafConfigurationState`.
+
+        This method sets the configuration state of this ``Step`` based on whether
+        or not a :attr:`config_key` is set *and exists is the ``Step's`` configuration*
+        (i.e. its portion of the user-suppled pipeline specification
+        file); any required deviation from this behavior requires special
+        handling.
+
         Parameters
         ----------
         parent_config
@@ -378,8 +389,9 @@ class Step:
     ) -> dict[str, list[str]]:
         """Validates a non-leaf ``Step``."""
         errors = {}
-        for node in self.step_graph.nodes:
-            step = self.step_graph.nodes[node]["step"]
+        nodes = self.step_graph.nodes
+        for node in nodes:
+            step = nodes[node]["step"]
             if isinstance(step, IOStep):
                 continue
             if step.name not in step_config:
@@ -390,7 +402,7 @@ class Step:
                 )
             if step_errors:
                 errors.update(step_errors)
-        extra_steps = set(step_config.keys()) - set(self.step_graph.nodes)
+        extra_steps = set(step_config.keys()) - set(nodes)
         for extra_step in extra_steps:
             errors[f"step {extra_step}"] = [f"{extra_step} is not a valid step."]
         return errors
@@ -807,12 +819,42 @@ class TemplatedStep(Step, ABC):
             The configuration for any implementations to be combined.
         input_data_config
             The input data configuration for the entire pipeline.
+
+        Notes
+        -----
+        A ``TemplatedStep`` is *always* assigned a :class:`NonLeafConfigurationState`
+        even if it has no multiplicity since (despite having no copies to make) we
+        still need to traverse the sub-``Steps`` to get to the one with a single
+        :class:`~easylink.implementation.Implementation`, i.e. the one with a
+        :class:`LeafConfigurationState`.
         """
-        num_repeats = len(self._get_config(parent_config[self.name]))
-        self.step_graph = self._update_step_graph(num_repeats)
-        self.slot_mappings = self._update_slot_mappings(num_repeats)
-        super().set_configuration_state(
-            parent_config, combined_implementations, input_data_config
+        step_config = parent_config[self.name]
+        if self.config_key not in step_config:
+            # Special handle the step_graph update
+            self.step_graph = StepGraph()
+            self.template_step.name = self.name
+            self.step_graph.add_node_from_step(self.template_step)
+            # Special handle the slot_mappings update
+            input_mappings = [
+                InputSlotMapping(slot, self.name, slot) for slot in self.input_slots
+            ]
+            output_mappings = [
+                OutputSlotMapping(slot, self.name, slot) for slot in self.output_slots
+            ]
+            self.slot_mappings = {"input": input_mappings, "output": output_mappings}
+            # Add the key back to the expanded config
+            expanded_config = LayeredConfigTree({self.name: step_config})
+        else:
+            expanded_config = self._get_config(step_config)
+            num_repeats = len(expanded_config)
+            self.step_graph = self._update_step_graph(num_repeats)
+            self.slot_mappings = self._update_slot_mappings(num_repeats)
+        # Manually set the configuration state to non-leaf instead of relying
+        # on super().get_configuration_state() because that method will erroneously
+        # set to leaf state in the event the user didn't include the config_key
+        # in the pipeline specification.
+        self._configuration_state = NonLeafConfigurationState(
+            self, expanded_config, combined_implementations, input_data_config
         )
 
     def _duplicate_template_step(self) -> Step:
@@ -1105,9 +1147,10 @@ class ChoiceStep(Step):
         initial ones are handled.
 
         We update the :class:`easylink.graph_components.StepGraph` and ``SlotMappings``
-        here as opposed to in :meth:`set_configuration_state` (as is done in :class:`TemplatedStep`)
-        because ``ChoiceStep`` validation happens prior to setting the configuration
-        state and actually requires the ``StepGraph`` and ``SlotMappings``.
+        in :meth:`validate_step` (as opposed to in :meth:`set_configuration_state`
+        as is done in :class:`TemplatedStep`) because :meth:`validate_step` is called
+        prior to :meth:`set_configuration_state`, but the validations itself actually
+        requires the updated ``StepGraph`` and ``SlotMappings``.
 
         We do not attempt to validate the subgraph here if the 'type' key is unable
         to be validated.
@@ -1136,7 +1179,7 @@ class ChoiceStep(Step):
                 ]
             }
 
-        # Handle the actual chosen step_config
+        # HACK: Update the step graph and mappings here because we need them for validation
         self.step_graph = self._update_step_graph(subgraph)
         self.slot_mappings = self._update_slot_mappings(subgraph)
         # NOTE: A ChoiceStep is by definition non-leaf step
@@ -1163,11 +1206,11 @@ class ChoiceStep(Step):
 
         Notes
         -----
-        We update the :class:`~easylink.graph_components.StepGraph` and
-        :class:`SlotMappings<easylink.graph_components.SlotMapping>` in
-        :meth:`validate_step` as opposed to here (as is done with
-        :class:`TemplatedSteps<TemplatedStep>`) because ``ChoiceStep`` validation
-        happens prior to this but requires the ``StepGraph`` and ``SlotMappings``.
+        We update the :class:`easylink.graph_components.StepGraph` and ``SlotMappings``
+        in :meth:`validate_step` (as opposed to in :meth:`set_configuration_state`
+        as is done in :class:`TemplatedStep`) because :meth:`validate_step` is called
+        prior to :meth:`set_configuration_state`, but the validations itself actually
+        requires the updated ``StepGraph`` and ``SlotMappings``.
         """
 
         chosen_parent_config = LayeredConfigTree(
@@ -1364,7 +1407,6 @@ class LeafConfigurationState(ConfigurationState):
             for mapping in mappings:
                 imp_edge = mapping.remap_edge(edge)
                 implementation_edges.append(imp_edge)
-
         elif edge.target_node == self._step.name:
             mappings = [
                 mapping
@@ -1520,7 +1562,6 @@ class NonLeafConfigurationState(ConfigurationState):
                 new_step = self._step.step_graph.nodes[mapping.child_node]["step"]
                 imp_edges = new_step.get_implementation_edges(new_edge)
                 implementation_edges.extend(imp_edges)
-
         elif edge.target_node == self._step.name:
             mappings = [
                 mapping
@@ -1544,8 +1585,9 @@ class NonLeafConfigurationState(ConfigurationState):
         This method recursively traverses the ``StepGraph`` and sets the configuration
         state for each ``Step`` until reaching all leaf nodes.
         """
-        for node in self._step.step_graph.nodes:
-            step = self._step.step_graph.nodes[node]["step"]
+        nodes = self._step.step_graph.nodes
+        for node in nodes:
+            step = nodes[node]["step"]
             step.set_configuration_state(
                 self.pipeline_config, self.combined_implementations, self.input_data_config
             )

{easylink-0.1.4 → easylink-0.1.6}/src/easylink.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: easylink
-Version: 0.1.4
+Version: 0.1.6
 Summary: Research repository for the EasyLink ER ecosystem project.
 Home-page: https://github.com/ihmeuw/easylink
 Author: The EasyLink developers

{easylink-0.1.4 → easylink-0.1.6}/src/easylink.egg-info/SOURCES.txt

@@ -35,7 +35,7 @@ docs/source/api_reference/runner.rst
 docs/source/api_reference/step.rst
 docs/source/api_reference/pipeline_schema_constants/development.rst
 docs/source/api_reference/pipeline_schema_constants/index.rst
-docs/source/api_reference/pipeline_schema_constants/tests.rst
+docs/source/api_reference/pipeline_schema_constants/testing.rst
 docs/source/api_reference/utilities/data_utils.rst
 docs/source/api_reference/utilities/general_utils.rst
 docs/source/api_reference/utilities/index.rst
@@ -71,7 +71,7 @@ src/easylink/images/spark_cluster/Dockerfile
 src/easylink/images/spark_cluster/README.md
 src/easylink/pipeline_schema_constants/__init__.py
 src/easylink/pipeline_schema_constants/development.py
-src/easylink/pipeline_schema_constants/tests.py
+src/easylink/pipeline_schema_constants/testing.py
 src/easylink/steps/dev/README.md
 src/easylink/steps/dev/build-containers-local.sh
 src/easylink/steps/dev/build-containers-remote.sh
@@ -112,6 +112,33 @@ tests/specifications/e2e/pipeline_expanded.yaml
 tests/specifications/integration/environment_spark_slurm.yaml
 tests/specifications/integration/pipeline.yaml
 tests/specifications/integration/pipeline_spark.yaml
+tests/specifications/unit/environment_minimum.yaml
+tests/specifications/unit/environment_spark_slurm.yaml
+tests/specifications/unit/pipeline.yaml
+tests/specifications/unit/pipeline_bad_combined_implementations.yaml
+tests/specifications/unit/pipeline_bad_implementation.yaml
+tests/specifications/unit/pipeline_bad_loop_formatting.yaml
+tests/specifications/unit/pipeline_bad_step.yaml
+tests/specifications/unit/pipeline_bad_type_key.yaml
+tests/specifications/unit/pipeline_combine_bad_implementation_names.yaml
+tests/specifications/unit/pipeline_combine_bad_topology.yaml
+tests/specifications/unit/pipeline_combine_two_steps.yaml
+tests/specifications/unit/pipeline_combine_with_extra_node.yaml
+tests/specifications/unit/pipeline_combine_with_iteration.yaml
+tests/specifications/unit/pipeline_combine_with_iteration_cycle.yaml
+tests/specifications/unit/pipeline_combine_with_missing_node.yaml
+tests/specifications/unit/pipeline_combine_with_parallel.yaml
+tests/specifications/unit/pipeline_missing_implementation_name.yaml
+tests/specifications/unit/pipeline_missing_implementations.yaml
+tests/specifications/unit/pipeline_missing_loop_nodes.yaml
+tests/specifications/unit/pipeline_missing_step.yaml
+tests/specifications/unit/pipeline_missing_substeps.yaml
+tests/specifications/unit/pipeline_missing_type_key.yaml
+tests/specifications/unit/pipeline_nested_templated_steps.yaml
+tests/specifications/unit/pipeline_out_of_order.yaml
+tests/specifications/unit/pipeline_spark.yaml
+tests/specifications/unit/pipeline_type_config_mismatch.yaml
+tests/specifications/unit/pipeline_wrong_parallel_split_keys.yaml
 tests/unit/__init__.py
 tests/unit/conftest.py
 tests/unit/test_cli.py

easylink-0.1.6/tests/specifications/unit/environment_minimum.yaml

@@ -0,0 +1,2 @@
+computing_environment: local
+container_engine: undefined

easylink-0.1.6/tests/specifications/unit/environment_spark_slurm.yaml

@@ -0,0 +1,15 @@
+computing_environment: slurm
+container_engine: singularity
+slurm:
+  account: some-account
+  partition: some-partition
+implementation_resources:
+  memory: 42
+  cpus: 42
+  time_limit: 42
+spark:
+  workers:
+    num_workers: 42
+    cpus_per_node: 42
+    mem_per_node: 42
+    time_limit: 42

easylink-0.1.6/tests/specifications/unit/pipeline.yaml

@@ -0,0 +1,15 @@
+steps:
+  step_1:
+    implementation:
+      name: step_1_python_pandas
+  step_2:
+    implementation:
+      name: step_2_python_pandas
+  step_3:
+    implementation:
+      name: step_3_python_pandas
+  choice_section:
+    type: simple
+    step_4:
+      implementation:
+        name: step_4_python_pandas

easylink-0.1.6/tests/specifications/unit/pipeline_bad_combined_implementations.yaml

@@ -0,0 +1,14 @@
+steps:
+  step_1:
+    implementation:
+      name: step_1_python_pandas
+  step_2:
+    implementation:
+      name: step_2_python_pandas
+  step_3:
+    combined_implementation_key: foo
+  choice_section:
+    type: simple
+    step_4:
+      implementation:
+        name: step_4_python_pandas

easylink-0.1.6/tests/specifications/unit/pipeline_bad_implementation.yaml

@@ -0,0 +1,15 @@
+steps:
+  step_1:
+    implementation:
+      name: foo  # not a valid/supported implementation
+  step_2:
+    implementation:
+      name: step_2_python_pandas
+  step_3:
+    implementation:
+      name: step_3_python_pandas
+  choice_section:
+    type: simple
+    step_4:
+      implementation:
+        name: step_4_python_pandas

easylink-0.1.6/tests/specifications/unit/pipeline_bad_loop_formatting.yaml

@@ -0,0 +1,15 @@
+steps:
+  step_1:
+    implementation:
+      name: step_1_python_pandas
+  step_2:
+    implementation:
+      name: step_2_python_pandas
+  step_3:
+    iterate:
+      implementation: step_3_python_pandas
+  choice_section:
+    type: simple
+    step_4:
+      implementation:
+        name: step_4_python_pandas

easylink-0.1.6/tests/specifications/unit/pipeline_bad_step.yaml

@@ -0,0 +1,18 @@
+steps:
+  foo:
+    implementation:
+      name: step_1_python_pandas
+  step_1:
+    implementation:
+      name: step_1_python_pandas
+  step_2:
+    implementation:
+      name: step_2_python_pandas
+  step_3:
+    implementation:
+      name: step_3_python_pandas
+  choice_section:
+    type: simple
+    step_4:
+      implementation:
+        name: step_4_python_pandas

easylink-0.1.6/tests/specifications/unit/pipeline_bad_type_key.yaml

@@ -0,0 +1,15 @@
+steps:
+  step_1:
+    implementation:
+      name: step_1_python_pandas
+  step_2:
+    implementation:
+      name: step_2_python_pandas
+  step_3:
+    implementation:
+      name: step_3_python_pandas
+  choice_section:
+    type: foo  # not a supported type
+    step_4:
+      implementation:
+        name: step_4_python_pandas

easylink-0.1.6/tests/specifications/unit/pipeline_combine_bad_implementation_names.yaml

@@ -0,0 +1,18 @@
+steps:
+  step_1:
+    implementation:
+      name: step_1_python_pandas
+  step_2:
+    implementation:
+      name: step_2_python_pandas
+    combined_implementation_key: step_3_4  # incorrect key
+  step_3:
+    implementation:
+      name: step_3_python_pandas
+  choice_section:
+    type: simple
+    step_4:
+      combined_implementation_key: step_3_4
+combined_implementations:
+  step_3_4:
+    name: step_3_and_step_4_combined_python_pandas

easylink-0.1.6/tests/specifications/unit/pipeline_combine_bad_topology.yaml

@@ -0,0 +1,18 @@
+steps:
+  step_1:
+    iterate:
+    - substeps:
+        step_1a:
+          implementation:
+            name: step_1a_python_pandas
+        step_1b:
+          combined_implementation_key: step_1a_1b
+    - substeps:
+        step_1a:
+          combined_implementation_key: step_1a_1b
+        step_1b:
+          implementation:
+            name: step_1b_python_pandas
+combined_implementations:
+  step_1a_1b:
+    name: step_1a_and_step_1b_combined_python_pandas

easylink-0.1.6/tests/specifications/unit/pipeline_combine_two_steps.yaml

@@ -0,0 +1,16 @@
+steps:
+  step_1:
+    implementation:
+      name: step_1_python_pandas
+  step_2:
+    implementation:
+      name: step_2_python_pandas
+  step_3:
+    combined_implementation_key: step_3_4
+  choice_section:
+    type: simple
+    step_4:
+      combined_implementation_key: step_3_4
+combined_implementations:
+  step_3_4:
+    name: step_3_and_step_4_combined_python_pandas

easylink-0.1.6/tests/specifications/unit/pipeline_combine_with_extra_node.yaml

@@ -0,0 +1,15 @@
+steps:
+  step_1:
+    implementation:
+      name: step_1_python_pandas
+  step_2:
+    combined_implementation_key: step_3_4
+  step_3:
+    combined_implementation_key: step_3_4
+  choice_section:
+    type: simple
+    step_4:
+      combined_implementation_key: step_3_4
+combined_implementations:
+  step_3_4:
+    name: step_3_and_step_4_combined_python_pandas

easylink-0.1.6/tests/specifications/unit/pipeline_combine_with_iteration.yaml

@@ -0,0 +1,19 @@
+steps:
+  step_1:
+    implementation:
+      name: step_1_python_pandas
+  step_2:
+    implementation:
+      name: step_2_python_pandas
+  step_3:
+    iterate:
+    - implementation:
+        name: step_3_python_pandas
+    - combined_implementation_key: step_3_4
+  choice_section:
+    type: simple
+    step_4:
+      combined_implementation_key: step_3_4
+combined_implementations:
+  step_3_4:
+    name: step_3_and_step_4_combined_python_pandas

easylink-0.1.6/tests/specifications/unit/pipeline_combine_with_iteration_cycle.yaml

@@ -0,0 +1,19 @@
+steps:
+  step_1:
+    implementation:
+      name: step_1_python_pandas
+  step_2:
+    implementation:
+      name: step_2_python_pandas
+  step_3:
+    iterate:
+    - combined_implementation_key: step_3_4
+    - implementation:
+        name: step_3_python_pandas
+  choice_section:
+    type: simple
+    step_4:
+      combined_implementation_key: step_3_4
+combined_implementations:
+  step_3_4:
+    name: step_3_and_step_4_combined_python_pandas

easylink-0.1.6/tests/specifications/unit/pipeline_combine_with_missing_node.yaml

@@ -0,0 +1,17 @@
+steps:
+  step_1:
+    implementation:
+      name: step_1_python_pandas
+  step_2:
+    implementation:
+      name: step_2_python_pandas
+  step_3:
+    implementation:
+      name: step_3_python_pandas
+  choice_section:
+    type: simple
+    step_4:
+      combined_implementation_key: step_3_4
+combined_implementations:
+  step_3_4:
+    name: step_3_and_step_4_combined_python_pandas

easylink-0.1.6/tests/specifications/unit/pipeline_combine_with_parallel.yaml

@@ -0,0 +1,24 @@
+steps:
+  step_1:
+    parallel:
+    - input_data_file: file1
+      implementation:
+        name: step_1_python_pandas
+    - input_data_file: file2
+      implementation:
+        name: step_1_python_pandas
+    - input_data_file: file2
+      combined_implementation_key: steps_1_and_2_combined
+  step_2:
+    combined_implementation_key: steps_1_and_2_combined
+  step_3:
+    implementation:
+      name: step_3_python_pandas
+  choice_section:
+    type: simple
+    step_4:
+      implementation:
+        name: step_4_python_pandas
+combined_implementations:
+  steps_1_and_2_combined:
+    name: step_1_and_step_2_combined_python_pandas

easylink-0.1.6/tests/specifications/unit/pipeline_missing_implementation_name.yaml

@@ -0,0 +1,15 @@
+steps:
+  step_1:
+    implementation:
+      foo: bar  # missing name key
+  step_2:
+    implementation:
+      name: step_2_python_pandas
+  step_3:
+    implementation:
+      name: step_3_python_pandas
+  choice_section:
+    type: simple
+    step_4:
+      implementation:
+        name: step_4_python_pandas