PyPI - easylink - Versions diffs - 0.1.25__tar.gz → 0.2.0__tar.gz - Mend

easylink 0.1.25tar.gz → 0.2.0tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (299) hide show

{easylink-0.1.25 → easylink-0.2.0}/.gitignore RENAMED Viewed

@@ -149,3 +149,5 @@ src/easylink/_version.py
 .specifications/
 .snakemake/
 */copilot-instructions.md
+results/

{easylink-0.1.25 → easylink-0.2.0}/CHANGELOG.rst RENAMED Viewed

@@ -1,3 +1,8 @@
+**0.2.0 - 6/30/25**
+ - Official demo release
+ - Add progress dots to terminal output
 **0.1.25 - 6/30/25**
  - Release new images

{easylink-0.1.25/src/easylink.egg-info → easylink-0.2.0}/PKG-INFO RENAMED Viewed

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: easylink
-Version: 0.1.25
+Version: 0.2.0
 Summary: Research repository for the EasyLink ER ecosystem project.
 Home-page: https://github.com/ihmeuw/easylink
 Author: The EasyLink developers

{easylink-0.1.25 → easylink-0.2.0}/docs/source/concepts/pipeline_schema/index.rst RENAMED Viewed

@@ -623,6 +623,8 @@ This step :ref:`has sub-steps <entity_resolution_sub_steps>`, which may be expan
   and similar incremental methods, the already-found clusters would be used directly
   and updated with new decisions about not-yet-clustered records.
+.. _canonicalizing:
 Canonicalizing and downstream analysis
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

{easylink-0.1.25 → easylink-0.2.0}/docs/source/user_guide/index.rst RENAMED Viewed

@@ -5,10 +5,6 @@ User Guide
 ==========
 Here we cover several core conceptual topics related using EasyLink.
-.. todo::
-   Everything
 .. toctree::
    :maxdepth: 2
    :glob:

easylink-0.2.0/docs/source/user_guide/tutorials/DAG-naive-pipeline.svg ADDED Viewed

@@ -0,0 +1,553 @@
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+<!-- 8&#45;&gt;27 -->
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+<title>8&#45;&gt;27</title>
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+<!-- 9&#45;&gt;8 -->
+<g id="edge20" class="edge">
+<title>9&#45;&gt;8</title>
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+<!-- 25 -->
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+<text text-anchor="middle" x="1365.38" y="-950.88" font-family="sans" font-size="10.00">default_schema_alignment_datasets_validator</text>
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+<!-- 9&#45;&gt;25 -->
+<g id="edge45" class="edge">
+<title>9&#45;&gt;25</title>
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+<!-- 10 -->
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+<title>10</title>
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+<text text-anchor="middle" x="1096.38" y="-1166.88" font-family="sans" font-size="10.00">determining_exclusions_and_removing_records_parallel_split_1_removing_records_default_removing_records</text>
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+<!-- 10&#45;&gt;9 -->
+<g id="edge23" class="edge">
+<title>10&#45;&gt;9</title>
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+<!-- 22 -->
+<g id="node23" class="node">
+<title>22</title>
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+<text text-anchor="middle" x="1096.38" y="-1094.88" font-family="sans" font-size="10.00">pre&#45;processing_parallel_split_1_pre&#45;processing_parallel_split_1_dummy_pre&#45;processing_dataset_validator</text>
+</g>
+<!-- 10&#45;&gt;22 -->
+<g id="edge38" class="edge">
+<title>10&#45;&gt;22</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M1096.38,-1151.34C1096.38,-1144.75 1096.38,-1137.08 1096.38,-1129.67"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="1099.88,-1129.93 1096.38,-1119.93 1092.88,-1129.93 1099.88,-1129.93"/>
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+<!-- 23 -->
+<g id="node24" class="node">
+<title>23</title>
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+<text text-anchor="middle" x="1623.38" y="-1022.88" font-family="sans" font-size="10.00">pre&#45;processing_parallel_split_2_pre&#45;processing_parallel_split_2_dummy_pre&#45;processing</text>
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+<!-- 10&#45;&gt;23 -->
+<g id="edge40" class="edge">
+<title>10&#45;&gt;23</title>
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+<!-- 24 -->
+<g id="node25" class="node">
+<title>24</title>
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+<text text-anchor="middle" x="1688.38" y="-1094.88" font-family="sans" font-size="10.00">pre&#45;processing_parallel_split_2_pre&#45;processing_parallel_split_2_dummy_pre&#45;processing_dataset_validator</text>
+</g>
+<!-- 10&#45;&gt;24 -->
+<g id="edge43" class="edge">
+<title>10&#45;&gt;24</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M1248.45,-1151.02C1332.6,-1141.07 1437.28,-1128.69 1523.41,-1118.51"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="1523.72,-1121.99 1533.24,-1117.34 1522.9,-1115.04 1523.72,-1121.99"/>
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+<!-- 11 -->
+<g id="node12" class="node">
+<title>11</title>
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+<text text-anchor="middle" x="704.38" y="-1310.88" font-family="sans" font-size="10.00">determining_exclusions_and_removing_records_parallel_split_1_determining_exclusions_default_determining_exclusions</text>
+</g>
+<!-- 11&#45;&gt;10 -->
+<g id="edge26" class="edge">
+<title>11&#45;&gt;10</title>
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+<!-- 15 -->
+<g id="node16" class="node">
+<title>15</title>
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+<text text-anchor="middle" x="1432.38" y="-1238.88" font-family="sans" font-size="10.00">determining_exclusions_and_removing_records_parallel_split_1_removing_records_default_removing_records_ids_to_remove_validator</text>
+</g>
+<!-- 11&#45;&gt;15 -->
+<g id="edge31" class="edge">
+<title>11&#45;&gt;15</title>
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+<polygon fill="grey" stroke="grey" stroke-width="2" points="1232.67,-1265.72 1242.28,-1261.28 1232,-1258.75 1232.67,-1265.72"/>
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+<!-- 12 -->
+<g id="node13" class="node">
+<title>12</title>
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+<text text-anchor="middle" x="368.38" y="-1382.88" font-family="sans" font-size="10.00">determining_exclusions_and_removing_records_parallel_split_1_determining_exclusions_default_determining_exclusions_input_datasets_validator</text>
+</g>
+<!-- 12&#45;&gt;11 -->
+<g id="edge29" class="edge">
+<title>12&#45;&gt;11</title>
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+<!-- 13 -->
+<g id="node14" class="node">
+<title>13</title>
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+<text text-anchor="middle" x="1125.38" y="-1382.88" font-family="sans" font-size="10.00">determining_exclusions_and_removing_records_parallel_split_1_determining_exclusions_default_determining_exclusions_known_clusters_validator</text>
+</g>
+<!-- 13&#45;&gt;11 -->
+<g id="edge30" class="edge">
+<title>13&#45;&gt;11</title>
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+<!-- 14 -->
+<g id="node15" class="node">
+<title>14</title>
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+<text text-anchor="middle" x="734.38" y="-1238.88" font-family="sans" font-size="10.00">determining_exclusions_and_removing_records_parallel_split_1_removing_records_default_removing_records_input_datasets_validator</text>
+</g>
+<!-- 14&#45;&gt;10 -->
+<g id="edge27" class="edge">
+<title>14&#45;&gt;10</title>
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+<!-- 15&#45;&gt;10 -->
+<g id="edge28" class="edge">
+<title>15&#45;&gt;10</title>
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+<!-- 16 -->
+<g id="node17" class="node">
+<title>16</title>
+<path fill="none" stroke="#d88d56" stroke-width="2" d="M2249.25,-1188C2249.25,-1188 1719.5,-1188 1719.5,-1188 1713.5,-1188 1707.5,-1182 1707.5,-1176 1707.5,-1176 1707.5,-1164 1707.5,-1164 1707.5,-1158 1713.5,-1152 1719.5,-1152 1719.5,-1152 2249.25,-1152 2249.25,-1152 2255.25,-1152 2261.25,-1158 2261.25,-1164 2261.25,-1164 2261.25,-1176 2261.25,-1176 2261.25,-1182 2255.25,-1188 2249.25,-1188"/>
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+<!-- 16&#45;&gt;9 -->
+<g id="edge24" class="edge">
+<title>16&#45;&gt;9</title>
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+<!-- 16&#45;&gt;22 -->
+<g id="edge39" class="edge">
+<title>16&#45;&gt;22</title>
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+<!-- 16&#45;&gt;23 -->
+<g id="edge41" class="edge">
+<title>16&#45;&gt;23</title>
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+<!-- 16&#45;&gt;24 -->
+<g id="edge44" class="edge">
+<title>16&#45;&gt;24</title>
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+<!-- 17 -->
+<g id="node18" class="node">
+<title>17</title>
+<path fill="none" stroke="#5673d8" stroke-width="2" d="M2429.75,-1332C2429.75,-1332 1843,-1332 1843,-1332 1837,-1332 1831,-1326 1831,-1320 1831,-1320 1831,-1308 1831,-1308 1831,-1302 1837,-1296 1843,-1296 1843,-1296 2429.75,-1296 2429.75,-1296 2435.75,-1296 2441.75,-1302 2441.75,-1308 2441.75,-1308 2441.75,-1320 2441.75,-1320 2441.75,-1326 2435.75,-1332 2429.75,-1332"/>
+<text text-anchor="middle" x="2136.38" y="-1310.88" font-family="sans" font-size="10.00">determining_exclusions_and_removing_records_parallel_split_2_determining_exclusions_default_determining_exclusions</text>
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+<!-- 17&#45;&gt;16 -->
+<g id="edge32" class="edge">
+<title>17&#45;&gt;16</title>
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+<g id="node22" class="node">
+<title>21</title>
+<path fill="none" stroke="#56d8a9" stroke-width="2" d="M3194.25,-1260C3194.25,-1260 2538.5,-1260 2538.5,-1260 2532.5,-1260 2526.5,-1254 2526.5,-1248 2526.5,-1248 2526.5,-1236 2526.5,-1236 2526.5,-1230 2532.5,-1224 2538.5,-1224 2538.5,-1224 3194.25,-1224 3194.25,-1224 3200.25,-1224 3206.25,-1230 3206.25,-1236 3206.25,-1236 3206.25,-1248 3206.25,-1248 3206.25,-1254 3200.25,-1260 3194.25,-1260"/>
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+<!-- 17&#45;&gt;21 -->
+<g id="edge37" class="edge">
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+<g id="node19" class="node">
+<title>18</title>
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+<!-- 18&#45;&gt;17 -->
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+<title>18&#45;&gt;17</title>
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+<!-- 19 -->
+<g id="node20" class="node">
+<title>19</title>
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+</g>
+<!-- 19&#45;&gt;17 -->
+<g id="edge36" class="edge">
+<title>19&#45;&gt;17</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M2635.75,-1367.02C2539.64,-1357.01 2419.94,-1344.54 2321.83,-1334.32"/>
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+<!-- 20 -->
+<g id="node21" class="node">
+<title>20</title>
+<path fill="none" stroke="#d85656" stroke-width="2" d="M2496.25,-1260C2496.25,-1260 1840.5,-1260 1840.5,-1260 1834.5,-1260 1828.5,-1254 1828.5,-1248 1828.5,-1248 1828.5,-1236 1828.5,-1236 1828.5,-1230 1834.5,-1224 1840.5,-1224 1840.5,-1224 2496.25,-1224 2496.25,-1224 2502.25,-1224 2508.25,-1230 2508.25,-1236 2508.25,-1236 2508.25,-1248 2508.25,-1248 2508.25,-1254 2502.25,-1260 2496.25,-1260"/>
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+</g>
+<!-- 20&#45;&gt;16 -->
+<g id="edge33" class="edge">
+<title>20&#45;&gt;16</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M2121.47,-1223.15C2097.77,-1214.14 2068.77,-1203.11 2043.55,-1193.51"/>
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+<!-- 21&#45;&gt;16 -->
+<g id="edge34" class="edge">
+<title>21&#45;&gt;16</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M2639.81,-1223.02C2512.37,-1212.9 2353.35,-1200.28 2223.86,-1190.01"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="2224.29,-1186.53 2214.04,-1189.23 2223.74,-1193.51 2224.29,-1186.53"/>
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+<!-- 22&#45;&gt;9 -->
+<g id="edge25" class="edge">
+<title>22&#45;&gt;9</title>
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+<!-- 23&#45;&gt;8 -->
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+<title>23&#45;&gt;8</title>
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+<!-- 23&#45;&gt;25 -->
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+<title>23&#45;&gt;25</title>
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+<!-- 24&#45;&gt;23 -->
+<g id="edge42" class="edge">
+<title>24&#45;&gt;23</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M1671.97,-1079.34C1664.94,-1071.77 1656.57,-1062.75 1648.77,-1054.35"/>
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+<!-- 25&#45;&gt;8 -->
+<g id="edge22" class="edge">
+<title>25&#45;&gt;8</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M1365.38,-935.34C1365.38,-928.75 1365.38,-921.08 1365.38,-913.67"/>
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+<!-- 26&#45;&gt;7 -->
+<g id="edge18" class="edge">
+<title>26&#45;&gt;7</title>
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+<polygon fill="grey" stroke="grey" stroke-width="2" points="1192.66,-767.07 1198.92,-758.53 1188.7,-761.3 1192.66,-767.07"/>
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+<!-- 27&#45;&gt;7 -->
+<g id="edge19" class="edge">
+<title>27&#45;&gt;7</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M1386.54,-791.06C1358.48,-781.88 1324.07,-770.63 1294.44,-760.94"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="1295.53,-757.61 1284.94,-757.83 1293.36,-764.27 1295.53,-757.61"/>
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+<!-- 28&#45;&gt;4 -->
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+<title>28&#45;&gt;4</title>
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+<title>29&#45;&gt;4</title>
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+<title>30&#45;&gt;3</title>
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+<title>31</title>
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easylink 0.1.25__tar.gz → 0.2.0__tar.gz

easylink 0.1.25tar.gz → 0.2.0tar.gz