easylink 0.1.21__tar.gz → 0.1.23__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (285) hide show
  1. {easylink-0.1.21 → easylink-0.1.23}/CHANGELOG.rst +9 -0
  2. {easylink-0.1.21 → easylink-0.1.23}/PKG-INFO +1 -1
  3. easylink-0.1.23/docs/source/user_guide/tutorials/2020/input_file_ssa.parquet +0 -0
  4. easylink-0.1.23/docs/source/user_guide/tutorials/2020/input_file_w2.parquet +0 -0
  5. easylink-0.1.23/docs/source/user_guide/tutorials/2030/input_file_ssa.parquet +0 -0
  6. easylink-0.1.23/docs/source/user_guide/tutorials/2030/input_file_w2.parquet +0 -0
  7. easylink-0.1.23/docs/source/user_guide/tutorials/create_inputs_demo.ipynb +776 -0
  8. {easylink-0.1.21 → easylink-0.1.23}/docs/source/user_guide/tutorials/getting_started.rst +10 -0
  9. easylink-0.1.23/docs/source/user_guide/tutorials/input_data_demo.yaml +3 -0
  10. easylink-0.1.23/docs/source/user_guide/tutorials/input_data_demo_2030.yaml +3 -0
  11. easylink-0.1.23/docs/source/user_guide/tutorials/pipeline_demo_improved.yaml +71 -0
  12. easylink-0.1.23/docs/source/user_guide/tutorials/pipeline_demo_naive.yaml +71 -0
  13. easylink-0.1.23/docs/source/user_guide/tutorials/print_fp_fn_w2_ssa.py +80 -0
  14. easylink-0.1.23/docs/source/user_guide/tutorials/print_metrics_w2_ssa.py +142 -0
  15. easylink-0.1.23/src/easylink/_version.py +1 -0
  16. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/configuration.py +4 -3
  17. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/implementation_metadata.yaml +53 -46
  18. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/pipeline_schema.py +3 -3
  19. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/pipeline_schema_constants/__init__.py +1 -0
  20. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/pipeline_schema_constants/testing.py +124 -1
  21. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/rule.py +5 -5
  22. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/step.py +46 -14
  23. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/cascading/exclude_clustered.py +2 -2
  24. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/cascading/exclude_none.py +2 -2
  25. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/cascading/update_clusters_by_connected_components.py +2 -2
  26. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/default/default_clusters_to_links.py +2 -2
  27. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/default/default_determining_exclusions.py +2 -2
  28. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/default/default_removing_records.py +2 -2
  29. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/default/default_schema_alignment.py +3 -2
  30. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/default/default_updating_clusters.py +2 -2
  31. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/dev/README.md +1 -1
  32. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/dev/python_pandas/dummy_step.py +4 -4
  33. easylink-0.1.23/src/easylink/steps/dev/python_pandas/python_pandas.def +22 -0
  34. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/dev/python_pyspark/dummy_step.py +5 -7
  35. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/dev/python_pyspark/python_pyspark.def +2 -12
  36. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/dev/r/dummy_step.R +2 -2
  37. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/dev/r/r-image.def +2 -12
  38. easylink-0.1.23/src/easylink/steps/example/middle_name_to_initial.def +22 -0
  39. easylink-0.1.23/src/easylink/steps/example/middle_name_to_initial.py +60 -0
  40. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/fastLink/fastLink_evaluating_pairs.R +4 -4
  41. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/fastLink/fastLink_links_to_clusters.R +2 -2
  42. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/output_dir/dummy_step_1_for_output_dir_example.py +1 -1
  43. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/output_dir/dummy_step_2_for_output_dir_example.py +2 -2
  44. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/rl-dummy/canonicalizing_and_downstream_analysis/dummy_canonicalizing_and_downstream_analysis.py +2 -2
  45. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/rl-dummy/pre-processing/dummy_pre-processing.py +2 -2
  46. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/splink/splink_blocking_and_filtering.def +1 -1
  47. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/splink/splink_blocking_and_filtering.py +32 -6
  48. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/splink/splink_evaluating_pairs.py +14 -4
  49. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/splink/splink_links_to_clusters.py +1 -1
  50. {easylink-0.1.21 → easylink-0.1.23}/src/easylink.egg-info/PKG-INFO +1 -1
  51. {easylink-0.1.21 → easylink-0.1.23}/src/easylink.egg-info/SOURCES.txt +18 -2
  52. easylink-0.1.23/tests/e2e/pipeline_improved_results.csv +25184 -0
  53. easylink-0.1.23/tests/e2e/pipeline_improved_results_2030.csv +28890 -0
  54. easylink-0.1.23/tests/e2e/pipeline_naive_results.csv +25184 -0
  55. {easylink-0.1.21 → easylink-0.1.23}/tests/e2e/test_easylink_run.py +1 -0
  56. {easylink-0.1.21 → easylink-0.1.23}/tests/e2e/test_pipelines_main_schema.py +83 -10
  57. {easylink-0.1.21 → easylink-0.1.23}/tests/e2e/test_step_types.py +1 -0
  58. easylink-0.1.23/tests/specifications/e2e/environment_slurm_4GB.yaml +16 -0
  59. {easylink-0.1.21 → easylink-0.1.23}/tests/specifications/e2e/pipeline_cascade.yaml +1 -1
  60. {easylink-0.1.21 → easylink-0.1.23}/tests/specifications/e2e/pipeline_expanded.yaml +1 -1
  61. {easylink-0.1.21 → easylink-0.1.23}/tests/specifications/integration/auto_parallel/pipeline_loop_step.yaml +1 -1
  62. {easylink-0.1.21 → easylink-0.1.23}/tests/specifications/unit/pipeline_bad_loop_formatting.yaml +1 -1
  63. {easylink-0.1.21 → easylink-0.1.23}/tests/specifications/unit/pipeline_combine_bad_topology.yaml +1 -1
  64. {easylink-0.1.21 → easylink-0.1.23}/tests/specifications/unit/pipeline_combine_with_iteration.yaml +1 -1
  65. {easylink-0.1.21 → easylink-0.1.23}/tests/specifications/unit/pipeline_combine_with_iteration_cycle.yaml +1 -1
  66. easylink-0.1.23/tests/specifications/unit/pipeline_default_implementations.yaml +24 -0
  67. {easylink-0.1.21 → easylink-0.1.23}/tests/specifications/unit/pipeline_missing_loop_nodes.yaml +1 -1
  68. {easylink-0.1.21 → easylink-0.1.23}/tests/specifications/unit/pipeline_nested_templated_steps.yaml +1 -1
  69. {easylink-0.1.21 → easylink-0.1.23}/tests/unit/rule_strings/auto_parallel_rule.txt +2 -2
  70. {easylink-0.1.21 → easylink-0.1.23}/tests/unit/rule_strings/implemented_rule_local.txt +2 -2
  71. {easylink-0.1.21 → easylink-0.1.23}/tests/unit/rule_strings/implemented_rule_slurm.txt +2 -2
  72. {easylink-0.1.21 → easylink-0.1.23}/tests/unit/rule_strings/pipeline_local.txt +8 -8
  73. {easylink-0.1.21 → easylink-0.1.23}/tests/unit/rule_strings/pipeline_slurm.txt +8 -8
  74. easylink-0.1.23/tests/unit/test_pipeline_schema.py +338 -0
  75. {easylink-0.1.21 → easylink-0.1.23}/tests/unit/test_rule.py +4 -4
  76. {easylink-0.1.21 → easylink-0.1.23}/tests/unit/test_step.py +8 -5
  77. {easylink-0.1.21 → easylink-0.1.23}/tests/unit/test_validations.py +1 -1
  78. easylink-0.1.21/src/easylink/_version.py +0 -1
  79. easylink-0.1.21/src/easylink/images/spark_cluster/Dockerfile +0 -16
  80. easylink-0.1.21/src/easylink/images/spark_cluster/README.md +0 -15
  81. easylink-0.1.21/src/easylink/steps/dev/python_pandas/python_pandas.def +0 -33
  82. easylink-0.1.21/tests/unit/test_pipeline_schema.py +0 -182
  83. {easylink-0.1.21 → easylink-0.1.23}/.bandit +0 -0
  84. {easylink-0.1.21 → easylink-0.1.23}/.flake8 +0 -0
  85. {easylink-0.1.21 → easylink-0.1.23}/.github/CODEOWNERS +0 -0
  86. {easylink-0.1.21 → easylink-0.1.23}/.github/pull_request_template.md +0 -0
  87. {easylink-0.1.21 → easylink-0.1.23}/.github/workflows/deploy.yml +0 -0
  88. {easylink-0.1.21 → easylink-0.1.23}/.github/workflows/update_readme.yml +0 -0
  89. {easylink-0.1.21 → easylink-0.1.23}/.gitignore +0 -0
  90. {easylink-0.1.21 → easylink-0.1.23}/.readthedocs.yml +0 -0
  91. {easylink-0.1.21 → easylink-0.1.23}/CONTRIBUTING.rst +0 -0
  92. {easylink-0.1.21 → easylink-0.1.23}/Jenkinsfile +0 -0
  93. {easylink-0.1.21 → easylink-0.1.23}/LICENSE +0 -0
  94. {easylink-0.1.21 → easylink-0.1.23}/Makefile +0 -0
  95. {easylink-0.1.21 → easylink-0.1.23}/README.rst +0 -0
  96. {easylink-0.1.21 → easylink-0.1.23}/docs/Makefile +0 -0
  97. {easylink-0.1.21 → easylink-0.1.23}/docs/nitpick-exceptions +0 -0
  98. {easylink-0.1.21 → easylink-0.1.23}/docs/source/_static/style.css +0 -0
  99. {easylink-0.1.21 → easylink-0.1.23}/docs/source/_templates/layout.html +0 -0
  100. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/cli.rst +0 -0
  101. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/configuration.rst +0 -0
  102. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/graph_components.rst +0 -0
  103. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/implementation.rst +0 -0
  104. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/index.rst +0 -0
  105. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/pipeline.rst +0 -0
  106. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/pipeline_graph.rst +0 -0
  107. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/pipeline_schema.rst +0 -0
  108. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/pipeline_schema_constants/development.rst +0 -0
  109. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/pipeline_schema_constants/index.rst +0 -0
  110. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/pipeline_schema_constants/testing.rst +0 -0
  111. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/rule.rst +0 -0
  112. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/runner.rst +0 -0
  113. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/step.rst +0 -0
  114. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/utilities/aggregator_utils.rst +0 -0
  115. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/utilities/data_utils.rst +0 -0
  116. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/utilities/general_utils.rst +0 -0
  117. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/utilities/index.rst +0 -0
  118. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/utilities/paths.rst +0 -0
  119. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/utilities/splitter_utils.rst +0 -0
  120. {easylink-0.1.21 → easylink-0.1.23}/docs/source/api_reference/utilities/validation_utils.rst +0 -0
  121. {easylink-0.1.21 → easylink-0.1.23}/docs/source/concepts/index.rst +0 -0
  122. {easylink-0.1.21 → easylink-0.1.23}/docs/source/concepts/pipeline_schema/images/01_step.drawio.png +0 -0
  123. {easylink-0.1.21 → easylink-0.1.23}/docs/source/concepts/pipeline_schema/images/02_default_implementation.drawio.png +0 -0
  124. {easylink-0.1.21 → easylink-0.1.23}/docs/source/concepts/pipeline_schema/images/03_slots.drawio.png +0 -0
  125. {easylink-0.1.21 → easylink-0.1.23}/docs/source/concepts/pipeline_schema/images/04_data_dependency.drawio.png +0 -0
  126. {easylink-0.1.21 → easylink-0.1.23}/docs/source/concepts/pipeline_schema/images/05_pipeline_schema.drawio.png +0 -0
  127. {easylink-0.1.21 → easylink-0.1.23}/docs/source/concepts/pipeline_schema/images/06_default_input.drawio.png +0 -0
  128. {easylink-0.1.21 → easylink-0.1.23}/docs/source/concepts/pipeline_schema/images/07_cloneable_section.drawio.png +0 -0
  129. {easylink-0.1.21 → easylink-0.1.23}/docs/source/concepts/pipeline_schema/images/08_cloneable_section_expanded.drawio.png +0 -0
  130. {easylink-0.1.21 → easylink-0.1.23}/docs/source/concepts/pipeline_schema/images/09_loopable_section.drawio.png +0 -0
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  134. {easylink-0.1.21 → easylink-0.1.23}/docs/source/concepts/pipeline_schema/images/13_autoparallel_section.drawio.png +0 -0
  135. {easylink-0.1.21 → easylink-0.1.23}/docs/source/concepts/pipeline_schema/images/14_choice_section.drawio.png +0 -0
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  137. {easylink-0.1.21 → easylink-0.1.23}/docs/source/concepts/pipeline_schema/images/16_step_hierarchy.drawio.png +0 -0
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  139. {easylink-0.1.21 → easylink-0.1.23}/docs/source/concepts/pipeline_schema/images/19_schema_to_pipeline_combined.drawio.png +0 -0
  140. {easylink-0.1.21 → easylink-0.1.23}/docs/source/concepts/pipeline_schema/images/clustering_sub_steps.drawio.png +0 -0
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  142. {easylink-0.1.21 → easylink-0.1.23}/docs/source/concepts/pipeline_schema/images/entity_resolution_sub_steps.drawio.png +0 -0
  143. {easylink-0.1.21 → easylink-0.1.23}/docs/source/concepts/pipeline_schema/images/linking_sub_steps.drawio.png +0 -0
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  145. {easylink-0.1.21 → easylink-0.1.23}/docs/source/concepts/workarounds.rst +0 -0
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  162. {easylink-0.1.21 → easylink-0.1.23}/docs/source/user_guide/tutorials/r_spark_pipeline.yaml +0 -0
  163. {easylink-0.1.21 → easylink-0.1.23}/pyproject.toml +0 -0
  164. {easylink-0.1.21 → easylink-0.1.23}/python_versions.json +0 -0
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  166. {easylink-0.1.21 → easylink-0.1.23}/setup.cfg +0 -0
  167. {easylink-0.1.21 → easylink-0.1.23}/setup.py +0 -0
  168. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/__about__.py +0 -0
  169. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/__init__.py +0 -0
  170. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/cli.py +0 -0
  171. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/devtools/implementation_creator.py +0 -0
  172. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/graph_components.py +0 -0
  173. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/implementation.py +0 -0
  174. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/pipeline.py +0 -0
  175. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/pipeline_graph.py +0 -0
  176. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/pipeline_schema_constants/development.py +0 -0
  177. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/pipeline_schema_constants/main.py +0 -0
  178. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/runner.py +0 -0
  179. {easylink-0.1.21 → easylink-0.1.23}/src/easylink/steps/cascading/exclude_clustered.def +0 -0
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+ **0.1.23 - 6/25/25**
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+ - Remove "dummy" pipeline references from codebase
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+ **0.1.22 - 6/24/25**
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+ - Feature: add support for default implementations
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  **0.1.21 - 6/16/25**
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  Metadata-Version: 2.4
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  Name: easylink
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- Version: 0.1.21
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  Summary: Research repository for the EasyLink ER ecosystem project.
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  Home-page: https://github.com/ihmeuw/easylink
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  Author: The EasyLink developers