easydev 0.13.2__tar.gz → 0.14.0__tar.gz

easydev-0.14.0/PKG-INFO

@@ -0,0 +1,173 @@
+Metadata-Version: 2.3
+Name: easydev
+Version: 0.14.0
+Summary: Common utilities to ease development of Python packages
+License: BSD-3-Clause
+Keywords: config,decorators,development
+Author: Thomas Cokelaer
+Author-email: thomas.cokelaer@pasteur.fr
+Requires-Python: >=3.8,<4.0
+Classifier: Development Status :: 5 - Production/Stable
+Classifier: Intended Audience :: Education
+Classifier: Intended Audience :: End Users/Desktop
+Classifier: Intended Audience :: Developers
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: BSD License
+Classifier: Operating System :: POSIX :: Linux
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
+Classifier: Topic :: Software Development :: Libraries :: Python Modules
+Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
+Classifier: Topic :: Scientific/Engineering :: Information Analysis
+Requires-Dist: colorama (>=0.4.6,<0.5.0)
+Requires-Dist: colorlog (>=6.8.2,<7.0.0)
+Requires-Dist: line-profiler (>=5.0.0,<6.0.0)
+Requires-Dist: pexpect (>=4.9.0,<5.0.0)
+Requires-Dist: platformdirs (>=4.2.0,<5.0.0)
+Project-URL: Documentation, https://easydev.readthedocs.io
+Project-URL: Homepage, https://easydev.readthedocs.io
+Project-URL: Issues, https://github.com/cokelaer/easydev/issues
+Project-URL: Repository, https://github.com/cokelaer/easydev
+Description-Content-Type: text/x-rst
+
+easydev
+##########
+
+.. image:: https://badge.fury.io/py/easydev.svg
+    :target: https://pypi.python.org/pypi/easydev
+
+.. image:: https://github.com/cokelaer/easydev/actions/workflows/main.yml/badge.svg
+    :target: https://github.com/cokelaer/easydev/actions/workflows/main.yml
+
+.. image:: https://coveralls.io/repos/cokelaer/easydev/badge.svg?branch=main
+   :target: https://coveralls.io/r/cokelaer/easydev?branch=main
+
+.. image:: https://static.pepy.tech/personalized-badge/easydev?period=total&units=INTERNATIONAL_SYSTEM&left_color=BLACK&right_color=GREEN&left_text=downloads
+    :target: https://pepy.tech/projects/easydev
+
+:documentation: http://easydev-python.readthedocs.io/en/latest/
+:contributions: Please join https://github.com/cokelaer/easydev
+:source: Please use https://github.com/cokelaer/easydev
+:issues: Please use https://github.com/cokelaer/easydev/issues
+:Python version supported: 3.9, 3.10, 3.11, 3.12, 3.13, 3.14
+
+Overview
+--------
+
+The `easydev <http://pypi.python.org/pypi/easydev/>`_ package provides
+miscellaneous utility functions and classes that are repeatedly useful during
+the development of Python packages. The goal is to help developers speed up
+their work by providing ready-to-use tools for common tasks such as parameter
+validation, logging, progress bars, configuration files, multiprocessing, and
+more.
+
+It has been used as an incubator for other packages (e.g.,
+`colormap <http://pypi.python.org/pypi/colormap>`_) and is used in projects
+such as `bioservices <https://pypi.python.org/pypi/bioservices>`_,
+`sequana <https://sequana.readthedocs.io>`_, and
+`GDSCTools <https://gdsctools.readthedocs.io>`_.
+
+Installation
+------------
+
+Install the latest release from PyPI::
+
+    pip install easydev
+
+Features
+--------
+
+- **Parameter validation** – ``check_param_in_list``, ``check_range``
+- **Dictionary utilities** – ``swapdict``, ``AttrDict`` (access dict keys as attributes, supports nested dicts)
+- **Logging** – coloured logging via ``Logging`` class
+- **Progress bar** – ``Progress`` works in Python, IPython, and Jupyter notebooks
+- **Timer** – measure elapsed time with the ``Timer`` context manager
+- **Profiling** – ``do_profile`` decorator using ``line_profiler``
+- **Configuration files** – ``CustomConfig`` and ``DynamicConfigParser`` for INI-style config management
+- **Shell commands** – ``shellcmd`` and ``execute`` wrappers around subprocess/pexpect
+- **File utilities** – ``touch``, ``mkdirs``, ``md5``
+- **Multiprocessing** – ``MultiProcessing`` class for easy parallel job execution
+- **Codecs** – ``to_list``, ``list2string`` and other conversion helpers
+- **URL utilities** – ``isurl_reachable`` and related helpers
+- **Sphinx integration** – bundled Sphinx theme and ``copybutton`` extension
+
+Quick Start
+-----------
+
+Parameter validation::
+
+    from easydev import check_param_in_list, check_range
+
+    check_param_in_list("on", ["on", "off"])   # passes silently
+    check_range(0.5, 0, 1)                     # passes silently
+
+AttrDict – access nested dictionary keys as attributes::
+
+    from easydev import AttrDict
+
+    d = AttrDict(**{"server": {"host": "localhost", "port": 8080}})
+    print(d.server.host)   # localhost
+    d.server.port = 9090
+
+Coloured logging::
+
+    from easydev import Logging
+
+    logger = Logging("myapp", "WARNING")
+    logger.warning("something went wrong")
+    logger.debug("not shown at WARNING level")
+    logger.level = "DEBUG"
+    logger.debug("now it is shown")
+
+Progress bar::
+
+    from easydev import Progress
+
+    pb = Progress(100)
+    for i in range(100):
+        # do work here
+        pb.animate(i + 1)
+
+Timer::
+
+    from easydev import Timer
+    import time
+
+    times = []
+    with Timer(times):
+        time.sleep(0.1)
+    print(f"elapsed: {times[0]:.2f}s")
+
+Multiprocessing::
+
+    from easydev.multicore import MultiProcessing
+
+    def square(n):
+        return n * n
+
+    t = MultiProcessing(maxcpu=4)
+    for i in range(10):
+        t.add_job(square, i)
+    t.run()
+    print(t.results)
+
+Changelog
+---------
+
+========= ==========================================================================
+Version   Description
+========= ==========================================================================
+0.13.3    * update pyproject with contribs from @s-t-e-v-e-n-k see PR37
+0.13.2    * replace mock with unittest.mock (fixes
+            https://github.com/cokelaer/easydev/issues/20)
+0.13.1    * fix get_dependencies
+0.13.0    * fix requirements (line_profiler) and CI
+0.12.2    * For developers: move to pyproject. add precommit
+          * replace pkg_resources (deprecated) with importlib
+          * replace appdirs with more generic platformdirs
+========= ==========================================================================
+

easydev-0.14.0/README.rst

@@ -0,0 +1,136 @@
+easydev
+##########
+
+.. image:: https://badge.fury.io/py/easydev.svg
+    :target: https://pypi.python.org/pypi/easydev
+
+.. image:: https://github.com/cokelaer/easydev/actions/workflows/main.yml/badge.svg
+    :target: https://github.com/cokelaer/easydev/actions/workflows/main.yml
+
+.. image:: https://coveralls.io/repos/cokelaer/easydev/badge.svg?branch=main
+   :target: https://coveralls.io/r/cokelaer/easydev?branch=main
+
+.. image:: https://static.pepy.tech/personalized-badge/easydev?period=total&units=INTERNATIONAL_SYSTEM&left_color=BLACK&right_color=GREEN&left_text=downloads
+    :target: https://pepy.tech/projects/easydev
+
+:documentation: http://easydev-python.readthedocs.io/en/latest/
+:contributions: Please join https://github.com/cokelaer/easydev
+:source: Please use https://github.com/cokelaer/easydev
+:issues: Please use https://github.com/cokelaer/easydev/issues
+:Python version supported: 3.9, 3.10, 3.11, 3.12, 3.13, 3.14
+
+Overview
+--------
+
+The `easydev <http://pypi.python.org/pypi/easydev/>`_ package provides
+miscellaneous utility functions and classes that are repeatedly useful during
+the development of Python packages. The goal is to help developers speed up
+their work by providing ready-to-use tools for common tasks such as parameter
+validation, logging, progress bars, configuration files, multiprocessing, and
+more.
+
+It has been used as an incubator for other packages (e.g.,
+`colormap <http://pypi.python.org/pypi/colormap>`_) and is used in projects
+such as `bioservices <https://pypi.python.org/pypi/bioservices>`_,
+`sequana <https://sequana.readthedocs.io>`_, and
+`GDSCTools <https://gdsctools.readthedocs.io>`_.
+
+Installation
+------------
+
+Install the latest release from PyPI::
+
+    pip install easydev
+
+Features
+--------
+
+- **Parameter validation** – ``check_param_in_list``, ``check_range``
+- **Dictionary utilities** – ``swapdict``, ``AttrDict`` (access dict keys as attributes, supports nested dicts)
+- **Logging** – coloured logging via ``Logging`` class
+- **Progress bar** – ``Progress`` works in Python, IPython, and Jupyter notebooks
+- **Timer** – measure elapsed time with the ``Timer`` context manager
+- **Profiling** – ``do_profile`` decorator using ``line_profiler``
+- **Configuration files** – ``CustomConfig`` and ``DynamicConfigParser`` for INI-style config management
+- **Shell commands** – ``shellcmd`` and ``execute`` wrappers around subprocess/pexpect
+- **File utilities** – ``touch``, ``mkdirs``, ``md5``
+- **Multiprocessing** – ``MultiProcessing`` class for easy parallel job execution
+- **Codecs** – ``to_list``, ``list2string`` and other conversion helpers
+- **URL utilities** – ``isurl_reachable`` and related helpers
+- **Sphinx integration** – bundled Sphinx theme and ``copybutton`` extension
+
+Quick Start
+-----------
+
+Parameter validation::
+
+    from easydev import check_param_in_list, check_range
+
+    check_param_in_list("on", ["on", "off"])   # passes silently
+    check_range(0.5, 0, 1)                     # passes silently
+
+AttrDict – access nested dictionary keys as attributes::
+
+    from easydev import AttrDict
+
+    d = AttrDict(**{"server": {"host": "localhost", "port": 8080}})
+    print(d.server.host)   # localhost
+    d.server.port = 9090
+
+Coloured logging::
+
+    from easydev import Logging
+
+    logger = Logging("myapp", "WARNING")
+    logger.warning("something went wrong")
+    logger.debug("not shown at WARNING level")
+    logger.level = "DEBUG"
+    logger.debug("now it is shown")
+
+Progress bar::
+
+    from easydev import Progress
+
+    pb = Progress(100)
+    for i in range(100):
+        # do work here
+        pb.animate(i + 1)
+
+Timer::
+
+    from easydev import Timer
+    import time
+
+    times = []
+    with Timer(times):
+        time.sleep(0.1)
+    print(f"elapsed: {times[0]:.2f}s")
+
+Multiprocessing::
+
+    from easydev.multicore import MultiProcessing
+
+    def square(n):
+        return n * n
+
+    t = MultiProcessing(maxcpu=4)
+    for i in range(10):
+        t.add_job(square, i)
+    t.run()
+    print(t.results)
+
+Changelog
+---------
+
+========= ==========================================================================
+Version   Description
+========= ==========================================================================
+0.13.3    * update pyproject with contribs from @s-t-e-v-e-n-k see PR37
+0.13.2    * replace mock with unittest.mock (fixes
+            https://github.com/cokelaer/easydev/issues/20)
+0.13.1    * fix get_dependencies
+0.13.0    * fix requirements (line_profiler) and CI
+0.12.2    * For developers: move to pyproject. add precommit
+          * replace pkg_resources (deprecated) with importlib
+          * replace appdirs with more generic platformdirs
+========= ==========================================================================

{easydev-0.13.2 → easydev-0.14.0}/easydev/appdirs.py

@@ -1,6 +1,3 @@
-import os
-import sys
-
 from platformdirs import (
     site_config_dir,
     site_data_dir,

{easydev-0.13.2 → easydev-0.14.0}/easydev/browser.py

@@ -61,11 +61,9 @@ There is also an alias **onweb**::
     from easydev import onweb
 
 """
-import argparse
 import os
 import sys
 import webbrowser
-from optparse import OptionParser
 
 
 def browse(url, verbose=True):
@@ -93,23 +91,23 @@ def _browse_mac(url, verbose=True):  # pragma: no cover
     try:
         os.system("open /Applications/Safari.app {}".format(url))
         return
-    except:
+    except Exception:
         pass
 
     try:
         os.system("open /Applications/Safari.app {}".format("http://" + url))
         return
-    except:
+    except Exception:
         pass
 
     try:
         webbrowser.open_new(url)
-    except:
+    except Exception:
         if verbose:
             print("Could not open %s. Trying to append http://" % url)
         try:
             webbrowser.open_new("open http://{}".format(url))
-        except:
+        except Exception:
             print("Could not open http://%s" % url)
             raise Exception
 
@@ -120,7 +118,7 @@ def _browse_linux(url, verbose=True):  # pragma: no cover
     try:
         webbrowser.open(url)
         return
-    except:
+    except Exception:
         pass
 
     try:
@@ -128,7 +126,7 @@ def _browse_linux(url, verbose=True):  # pragma: no cover
             print("Could not open %s" % url)
         webbrowser.open("http://" + url)
         return
-    except:
+    except Exception:
         pass
 
     raise Exception("Could not open http://{}".format(url))
@@ -172,6 +170,4 @@ def main(args=None):  # pragma: no cover
 
 
 if __name__ == "__main__":  # pragma: no cover
-    import sys
-
     main(sys.argv)

{easydev-0.13.2 → easydev-0.14.0}/easydev/chunks.py

@@ -29,12 +29,6 @@
 __all__ = ["split_into_chunks"]
 
 
-try:
-    range = xrange  # py2
-except:
-    pass  # py3
-
-
 def split_into_chunks(items, maxchunks=10):
     """Split a list evenly into N chunks
 

{easydev-0.13.2 → easydev-0.14.0}/easydev/codecs.py

@@ -56,7 +56,7 @@ def to_list(data, verbose=True):
         try:
             data = data.tolist()
             return data
-        except:
+        except Exception:
             if verbose:
                 print("not known type. Trying to cast into a list")
             return list(data)

{easydev-0.13.2 → easydev-0.14.0}/easydev/config_tools.py

@@ -125,14 +125,14 @@ class DynamicConfigParser(ConfigParser):
             self.read(self._filename)
         elif isinstance(config_or_filename, ConfigParser):
             self._replace_config(config_or_filename)
-        elif config_or_filename == None:
+        elif config_or_filename is None:
             pass
         else:
             raise TypeError("config_or_filename must be a valid filename or valid ConfigParser instance")
 
     def read(self, filename):
         """Load a new config from a filename (remove all previous sections)"""
-        if os.path.isfile(filename) == False:
+        if not os.path.isfile(filename):
             raise IOError("filename {0} not found".format(filename))
 
         config = ConfigParser()
@@ -220,9 +220,9 @@ class DynamicConfigParser(ConfigParser):
                 try:  # numbers
                     try:
                         options[option] = self.getint(section, option)
-                    except:
+                    except Exception:
                         options[option] = self.getfloat(section, option)
-                except:  # string
+                except Exception:  # string
                     options[option] = self.get(section, option, raw=True)
         return options
 
@@ -238,7 +238,7 @@ class DynamicConfigParser(ConfigParser):
 
         """
         try:
-            if os.path.exists(filename) == True:
+            if os.path.exists(filename):
                 print("Warning: over-writing %s " % filename)
             fp = open(filename, "w")
         except Exception as err:  # pragma: no cover
@@ -311,7 +311,7 @@ class DynamicConfigParser(ConfigParser):
                     if str(self.get(section, option, raw=True)) != str(data.get(section, option, raw=True)):
                         print("option %s in section %s differ" % (option, section))
                         return False
-                except:  # pragma: no cover
+                except Exception:  # pragma: no cover
                     return False
         return True
 

{easydev-0.13.2 → easydev-0.14.0}/easydev/console.py

@@ -48,7 +48,7 @@ def get_terminal_width():
         terminal_width = width
     except (SystemExit, KeyboardInterrupt):  # pragma: no cover
         raise
-    except:
+    except Exception:
         # FALLBACK
         terminal_width = int(os.environ.get("COLUMNS", 80)) - 1
     return terminal_width

{easydev-0.13.2 → easydev-0.14.0}/easydev/copybutton.py

@@ -91,7 +91,7 @@ def get_copybutton_path():
         try:
             packagedir = easydev.__path__[0]
             packagedir = os.path.realpath(pj(packagedir, "..", "share"))
-        except:
+        except Exception:
             raise IOError("could not find data directory")
     return pj(packagedir, "copybutton.js")
 

{easydev-0.13.2 → easydev-0.14.0}/easydev/decorators.py

@@ -14,7 +14,6 @@
 #
 ##############################################################################
 """Handy decorators"""
-import threading
 from functools import wraps
 
 __all__ = ["ifpylab", "requires", "ifpandas"]
@@ -100,6 +99,7 @@ def _blocking(not_avail):
     return blocking
 """
 
+
 # same as require decorator but works with list of stirngs of
 # single string and uses the functools utilities
 def requires(requires, msg=""):
@@ -122,7 +122,7 @@ def requires(requires, msg=""):
     """
     if isinstance(requires, str):
         requires = [requires]
-    elif isinstance(requires, list) == False:
+    elif not isinstance(requires, list):
         raise TypeError(
             "First argument of the /requires/ decorator must be a"
             + "string or list of string representing the required attributes"
@@ -134,7 +134,7 @@ def requires(requires, msg=""):
         @wraps(f)
         def wrapper(*args, **kwds):
             for require in requires:
-                if hasattr(args[0], require) == False:
+                if not hasattr(args[0], require):
                     raise AttributeError("{} not found in {}. ".format(require, args[0]) + msg)
             return f(*args, **kwds)
 
@@ -157,7 +157,7 @@ def ifpandas(func):
         return func(*args, **kwds)
 
     try:
-        import pandas
+        import pandas  # noqa: F401
 
         return wrapper
     except Exception:  # pragma: no cover
@@ -179,7 +179,7 @@ def ifpylab(func):
 
     # for methods
     try:
-        import pylab
+        import pylab  # noqa: F401
 
         return wrapper
     except Exception:  # pragma: no cover

{easydev-0.13.2 → easydev-0.14.0}/easydev/easytest.py

@@ -71,7 +71,7 @@ def trysetattr(this, attrname, value, possible):
         AssertionError
 
     """
-    if possible == True:
+    if possible is True:
         a1 = True
         a2 = False
     else:
@@ -102,7 +102,7 @@ class TempFile(object):
     def delete(self):
         try:
             self.temp._closer.delete = True
-        except:  # pragma: no cover
+        except AttributeError:  # pragma: no cover
             self.temp.delete = True
         self.temp.close()
 

{easydev-0.13.2 → easydev-0.14.0}/easydev/logging_tools.py

@@ -59,7 +59,6 @@ class Logging(object):
     def _set_name(self, name):
         level = self.level
         self._name = name
-        logger = colorlog.getLogger(self._name)
         if level == 0:
             self._set_level("WARNING")
         else:

{easydev-0.13.2 → easydev-0.14.0}/easydev/misc.py

@@ -20,16 +20,10 @@ __all__ = ["get_home", "cmd_exists"]
 
 def get_home():
     """Return path of the HOME"""
-    # This function should be robust
     # First, let us try with expanduser
-    try:
-        homedir = os.path.expanduser("~")
-    except ImportError:  # pragma: no cover
-        # This may happen.
-        pass
-    else:
-        if os.path.isdir(homedir):
-            return homedir
+    homedir = os.path.expanduser("~")
+    if os.path.isdir(homedir):
+        return homedir
     # Then, with getenv
     for this in ("HOME", "USERPROFILE", "TMP"):  # pragma: no cover
         # getenv is same as os.environ.get

{easydev-0.13.2 → easydev-0.14.0}/easydev/multicore.py

@@ -19,6 +19,12 @@ from multiprocessing import Pool, Process, Queue, cpu_count
 __all__ = ["MultiProcessing"]
 
 
+def _init_worker():
+    import signal
+
+    signal.signal(signal.SIGINT, signal.SIG_IGN)
+
+
 class MultiProcessing(object):
     """Class to run jobs in an asynchronous manner.
 
@@ -53,7 +59,7 @@ class MultiProcessing(object):
 
 
         """
-        if maxcpu == None:
+        if maxcpu is None:
             maxcpu = cpu_count()
 
         self.maxcpu = maxcpu
@@ -102,13 +108,8 @@ class MultiProcessing(object):
             self.pb = Progress(len(self.jobs), 1)
             self.pb.animate(0)
 
-        def init_worker():
-            import signal
-
-            signal.signal(signal.SIGINT, signal.SIG_IGN)
-
         self.results = []
-        self.pool = Pool(self.maxcpu, init_worker)
+        self.pool = Pool(self.maxcpu, _init_worker)
 
         for process in self.jobs:
             self.pool.apply_async(process._target, process._args, process._kwargs, callback=self._cb)

{easydev-0.13.2 → easydev-0.14.0}/easydev/paths.py

@@ -18,7 +18,6 @@
 import importlib
 import os
 from os.path import join as pj
-from pathlib import Path
 
 __all__ = [
     "get_shared_directory_path",
@@ -53,7 +52,7 @@ def get_shared_directory_path(package):
 
     # print("install  mode ? ")
     sharedir = os.path.realpath(pj(location, package, "share"))
-    if os.path.isdir(sharedir) == True:
+    if os.path.isdir(sharedir):
         # looks like we have found the share directory so it is an install mode
         # print ("yes")
         return sharedir
@@ -63,13 +62,13 @@ def get_shared_directory_path(package):
         # FIXME: do we need the 3 cases ??
         # probably just 2 are required, one for develop and one for install mode
         sharedir = os.path.realpath(pj(location, "..", "share"))
-        if os.path.isdir(sharedir) == True:
+        if os.path.isdir(sharedir):
             return sharedir
         sharedir = os.path.realpath(pj(location, "..", "..", "share"))
-        if os.path.isdir(sharedir) == True:
+        if os.path.isdir(sharedir):
             return sharedir
         sharedir = os.path.realpath(pj(location, "..", "..", "..", "share"))
-        if os.path.isdir(sharedir) == True:
+        if os.path.isdir(sharedir):
             return sharedir
         # could not be found,
         sharedir = []
@@ -117,10 +116,10 @@ def get_share_file(package, datadir, filename):
     packagedir = get_shared_directory_path(package)
     fullpath = os.path.join(packagedir, datadir)
     # check that it exists
-    if os.path.isdir(fullpath) == False:  # pragma: no cover
+    if not os.path.isdir(fullpath):  # pragma: no cover
         raise ValueError("The directory %s in package %s does not seem to exist" % (packagedir, fullpath))
     filename_path = os.path.join(fullpath, filename)
-    if os.path.isfile(filename_path) == False:
+    if not os.path.isfile(filename_path):
         correct_files = [x for x in os.listdir(fullpath) if os.path.isfile(x)]
         msg = "The file %s does not exists. Correct filenames found in %s/%s are:\n" % (
             filename_path,

{easydev-0.13.2 → easydev-0.14.0}/easydev/platform.py

@@ -14,7 +14,6 @@
 #
 ##############################################################################
 
-import os
 import sys
 
 __all__ = ["get_platform"]
@@ -36,24 +35,17 @@ def get_platform():  # pragma: no cover
 
     """
     print("//easydev.get_platform() Will be deprecated in future version of easydev")
-    try:
-        platform = plf.system()
-        return platform
-    except:
-        # platform is not available under all systems (e.g., WLST tool
-        # see http://stackoverflow.com/questions/1854/python-what-os-am-i-running-on
-        # so, let us try sys.platform
-        platform = sys.platform
-        if platform.startswith("linux"):
-            platform = "Linux"
-        elif platform.startswith("java"):
-            platform = "Java"
-        elif platform.startswith("win"):
-            platform = "Windows"
-        elif platform.startswith("darwin"):
-            platform = "Darwin"
-        else:
-            print("platform not parsed. Return raw value of sys.platform.")
+    platform = sys.platform
+    if platform.startswith("linux"):
+        platform = "Linux"
+    elif platform.startswith("java"):
+        platform = "Java"
+    elif platform.startswith("win"):
+        platform = "Windows"
+    elif platform.startswith("darwin"):
+        platform = "Darwin"
+    else:
+        print("platform not parsed. Return raw value of sys.platform.")
     return platform
 
 

{easydev-0.13.2 → easydev-0.14.0}/easydev/sphinx_themes.py

@@ -51,5 +51,5 @@ def get_sphinx_themes():
 
     sharedir = get_shared_directory_path("easydev")
     sharedir = pj(sharedir, "themes")
-    themes = [x for x in os.listdir(sharedir) if x.startswith(".") == False]
+    themes = [x for x in os.listdir(sharedir) if not x.startswith(".")]
     return themes

{easydev-0.13.2 → easydev-0.14.0}/easydev/tools.py

@@ -161,7 +161,7 @@ def execute(cmd, showcmd=True, verbose=True):
         if verbose:
             try:
                 sys.stdout.write(line.decode())
-            except:
+            except Exception:
                 sys.stdout.write(line)
 
             sys.stdout.flush()
@@ -279,12 +279,9 @@ class AttrDict(dict):
 
         :param dict content: a valid dictionary
         """
-        # accepts dict and attrdict classes
-        try:
-            from collections import OrderedDict
-        except:
-            OrderedDict = AttrDict
+        from collections import OrderedDict
 
+        # accepts dict and attrdict classes
         if content.__class__ not in [dict, OrderedDict, AttrDict]:
             raise TypeError
 

{easydev-0.13.2 → easydev-0.14.0}/easydev/url.py

@@ -14,10 +14,7 @@
 #
 ##############################################################################
 """Utilities related to the web"""
-try:
-    import httplib
-except ImportError:
-    import http.client as httplib
+import http.client as httplib
 
 __all__ = ["isurl_reachable"]
 
@@ -39,13 +36,13 @@ def isurl_reachable(url, timeout=10, path="/"):  # pragma: no cover
     conn = httplib.HTTPConnection(url, timeout=timeout)
     try:
         conn.request("HEAD", path)
-    except:
+    except Exception:
         return False
     # 302 is a redirection
     # 200 is okay
     try:
         response = conn.getresponse()
-    except:
+    except Exception:
         return False
 
     if response.status in [200, 302]:

{easydev-0.13.2 → easydev-0.14.0}/pyproject.toml

@@ -2,11 +2,13 @@
 requires = ["poetry-core"]
 build-backend = "poetry.core.masonry.api"
 
-[tool.poetry]
+[project]
 name = "easydev"
-version = "0.13.2"
-description = "Commn utilities to ease development of Python packages"
-authors = ["Thomas Cokelaer <thomas.cokelaer@pasteur.fr>"]
+version = "0.14.0"
+description = "Common utilities to ease development of Python packages"
+authors = [
+    { "name" = "Thomas Cokelaer", "email" = "thomas.cokelaer@pasteur.fr" },
+]
 license = "BSD-3-Clause"
 readme = "README.rst"
 keywords = ["config", "decorators", "development"]
@@ -19,10 +21,12 @@ classifiers = [
         "Intended Audience :: Science/Research",
         "License :: OSI Approved :: BSD License",
         "Operating System :: POSIX :: Linux",
-        "Programming Language :: Python :: 3.8",
         "Programming Language :: Python :: 3.9",
         "Programming Language :: Python :: 3.10",
         "Programming Language :: Python :: 3.11",
+        "Programming Language :: Python :: 3.12",
+        "Programming Language :: Python :: 3.13",
+        "Programming Language :: Python :: 3.14",
         "Topic :: Software Development :: Libraries :: Python Modules",
         "Topic :: Scientific/Engineering :: Bio-Informatics",
         "Topic :: Scientific/Engineering :: Information Analysis",
@@ -49,7 +53,7 @@ colorama = "^0.4.6"
 colorlog = "^6.8.2"
 pexpect = "^4.9.0"
 platformdirs = "^4.2.0"
-line-profiler = "^4.1.2"
+line-profiler = "^5.0.0"
 
 
 

easydev-0.13.2/PKG-INFO

@@ -1,86 +0,0 @@
-Metadata-Version: 2.1
-Name: easydev
-Version: 0.13.2
-Summary: Commn utilities to ease development of Python packages
-License: BSD-3-Clause
-Keywords: config,decorators,development
-Author: Thomas Cokelaer
-Author-email: thomas.cokelaer@pasteur.fr
-Requires-Python: >=3.8,<4.0
-Classifier: Development Status :: 5 - Production/Stable
-Classifier: Intended Audience :: Developers
-Classifier: Intended Audience :: Education
-Classifier: Intended Audience :: End Users/Desktop
-Classifier: Intended Audience :: Science/Research
-Classifier: License :: OSI Approved :: BSD License
-Classifier: Operating System :: POSIX :: Linux
-Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.8
-Classifier: Programming Language :: Python :: 3.9
-Classifier: Programming Language :: Python :: 3.10
-Classifier: Programming Language :: Python :: 3.11
-Classifier: Programming Language :: Python :: 3.12
-Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
-Classifier: Topic :: Scientific/Engineering :: Information Analysis
-Classifier: Topic :: Software Development :: Libraries :: Python Modules
-Requires-Dist: colorama (>=0.4.6,<0.5.0)
-Requires-Dist: colorlog (>=6.8.2,<7.0.0)
-Requires-Dist: line-profiler (>=4.1.2,<5.0.0)
-Requires-Dist: pexpect (>=4.9.0,<5.0.0)
-Requires-Dist: platformdirs (>=4.2.0,<5.0.0)
-Description-Content-Type: text/x-rst
-
-easydev
-##########
-
-.. image:: https://badge.fury.io/py/easydev.svg
-    :target: https://pypi.python.org/pypi/easydev
-
-.. image:: https://github.com/cokelaer/easydev/actions/workflows/main.yml/badge.svg
-    :target: https://github.com/cokelaer/easydev/actions/workflows/main.yml
-
-
-.. image:: https://coveralls.io/repos/cokelaer/easydev/badge.svg?branch=main
-   :target: https://coveralls.io/r/cokelaer/easydev?branch=main
-
-
-
-
-:documentation: http://easydev-python.readthedocs.io/en/latest/
-:contributions: Please join https://github.com/cokelaer/easydev
-:source: Please use https://github.com/cokelaer/easydev
-:issues: Please use https://github.com/cokelaer/easydev/issues
-:Python version supported: 3.7, 3.8, 3.9, 3.10, 3.11, 3.12
-
-
-The  `easydev <http://pypi.python.org/pypi/easydev/>`_ package
-provides miscellaneous functions that are repeatidly used during
-the development of Python packages. The goal is to help developers on
-speeding up their own dev. It has been used also as an incubator for other
-packages (e.g., http://pypi.python.org/pypi/colormap) and is stable.
-
-.. warning:: I'm not pretending to provide universal and bug-free tools. The
-    tools provided may also change. However, **easydev** is used
-    in a few other packages such as
-    `bioservices <https://pypi.python.org/pypi/bioservices>`_,
-    `sequana <https://sequana.readthedocs.io>`_ or
-    `GDSCTools <https://sequana.readthedocs.io>`_ to give a few
-    examples.
-
-
-
-Changelog
-~~~~~~~~~
-
-========= ==========================================================================
-Version   Description
-========= ==========================================================================
-0.13.2    * replace mock with unittest.mock (fixes
-            https://github.com/cokelaer/easydev/issues/20)
-0.13.1    * fix get_dependencies
-0.13.0    * fix requirements (line_profiler) and CI
-0.12.2    * For developers: move to pyprojet. add precomit
-          * replace pkg_resources (deprecated) with importlib
-          * replace appdirs with more generic platformdirs
-========= ==========================================================================
-

easydev-0.13.2/README.rst

@@ -1,53 +0,0 @@
-easydev
-##########
-
-.. image:: https://badge.fury.io/py/easydev.svg
-    :target: https://pypi.python.org/pypi/easydev
-
-.. image:: https://github.com/cokelaer/easydev/actions/workflows/main.yml/badge.svg
-    :target: https://github.com/cokelaer/easydev/actions/workflows/main.yml
-
-
-.. image:: https://coveralls.io/repos/cokelaer/easydev/badge.svg?branch=main
-   :target: https://coveralls.io/r/cokelaer/easydev?branch=main
-
-
-
-
-:documentation: http://easydev-python.readthedocs.io/en/latest/
-:contributions: Please join https://github.com/cokelaer/easydev
-:source: Please use https://github.com/cokelaer/easydev
-:issues: Please use https://github.com/cokelaer/easydev/issues
-:Python version supported: 3.7, 3.8, 3.9, 3.10, 3.11, 3.12
-
-
-The  `easydev <http://pypi.python.org/pypi/easydev/>`_ package
-provides miscellaneous functions that are repeatidly used during
-the development of Python packages. The goal is to help developers on
-speeding up their own dev. It has been used also as an incubator for other
-packages (e.g., http://pypi.python.org/pypi/colormap) and is stable.
-
-.. warning:: I'm not pretending to provide universal and bug-free tools. The
-    tools provided may also change. However, **easydev** is used
-    in a few other packages such as
-    `bioservices <https://pypi.python.org/pypi/bioservices>`_,
-    `sequana <https://sequana.readthedocs.io>`_ or
-    `GDSCTools <https://sequana.readthedocs.io>`_ to give a few
-    examples.
-
-
-
-Changelog
-~~~~~~~~~
-
-========= ==========================================================================
-Version   Description
-========= ==========================================================================
-0.13.2    * replace mock with unittest.mock (fixes
-            https://github.com/cokelaer/easydev/issues/20)
-0.13.1    * fix get_dependencies
-0.13.0    * fix requirements (line_profiler) and CI
-0.12.2    * For developers: move to pyprojet. add precomit
-          * replace pkg_resources (deprecated) with importlib
-          * replace appdirs with more generic platformdirs
-========= ==========================================================================