dxpy 0.391.0__tar.gz → 0.392.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {dxpy-0.391.0 → dxpy-0.392.0}/PKG-INFO +1 -1
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/dxfile.py +2 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/scripts/dx_app_wizard.py +1 -1
- dxpy-0.392.0/dxpy/toolkit_version.py +1 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy.egg-info/PKG-INFO +1 -1
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_dx_app_wizard.py +1 -1
- dxpy-0.391.0/dxpy/toolkit_version.py +0 -1
- {dxpy-0.391.0 → dxpy-0.392.0}/MANIFEST.in +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/Readme.md +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/__init__.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/api.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/app_builder.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/app_categories.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/asset_builder.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/__init__.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/apollo/__init__.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/apollo/cmd_line_options_validator.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/apollo/data_transformations.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/apollo/dataset.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/apollo/json_validation_by_schema.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/apollo/schemas/__init__.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/apollo/schemas/assay_filtering_conditions.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/apollo/schemas/assay_filtering_json_schemas.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/apollo/schemas/input_arguments_validation_schemas.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/apollo/vizclient.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/apollo/vizserver_filters_from_json_parser.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/apollo/vizserver_payload_builder.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/auth.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/download_all_inputs.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/dxanalysis.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/dxapp.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/dxapp_container_functions.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/dxapplet.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/dxdatabase.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/dxdatabase_functions.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/dxdataobject_functions.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/dxfile_functions.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/dxglobalworkflow.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/dxjob.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/dxproject.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/dxrecord.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/dxworkflow.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/mount_all_inputs.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/search.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/cli/__init__.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/cli/cp.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/cli/dataset_utilities.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/cli/download.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/cli/exec_io.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/cli/help_messages.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/cli/org.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/cli/output_handling.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/cli/parsers.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/cli/workflow.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/compat.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/Homo_sapiens_genes_manifest.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/Homo_sapiens_genes_manifest_staging.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/Homo_sapiens_genes_manifest_staging_vep.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/Homo_sapiens_genes_manifest_vep.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/__init__.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/cohort_filter_payload.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/column_conditions.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/column_conversion.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/filter_to_payload.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/germline_utils.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/input_validation.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/input_validation_somatic.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/retrieve_allele_schema.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/retrieve_annotation_schema.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/retrieve_bins.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/retrieve_genotype_schema.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/return_columns_allele.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/return_columns_annotation.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/return_columns_genotype.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/return_columns_genotype_only.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/somatic_filter_payload.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dxlog.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/exceptions.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/executable_builder.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/nextflow/ImageRef.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/nextflow/ImageRefFactory.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/nextflow/__init__.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/nextflow/awscli_assets.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/nextflow/awscli_assets.staging.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/nextflow/collect_images.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/nextflow/nextaur_assets.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/nextflow/nextaur_assets.staging.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/nextflow/nextflow_assets.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/nextflow/nextflow_assets.staging.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/nextflow/nextflow_builder.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/nextflow/nextflow_templates.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/nextflow/nextflow_utils.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/packages/__init__.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/scripts/__init__.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/scripts/dx.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/scripts/dx_build_app.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/scripts/dx_build_applet.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/ssh_tunnel_app_support.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/system_requirements.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/__init__.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/bash.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/python.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/Readme.md +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/bash/basic/dxapp.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/bash/basic/src/code.sh +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/bash/parallelized/dxapp.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/bash/parallelized/src/code.sh +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/bash/scatter-process-gather/dxapp.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/bash/scatter-process-gather/src/code.sh +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/nextflow/dxapp.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/nextflow/src/nextflow.sh +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/python/basic/dxapp.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/python/basic/src/code.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/python/basic/test/test.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/python/parallelized/dxapp.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/python/parallelized/src/code.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/python/parallelized/test/test.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/python/scatter-process-gather/dxapp.json +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/python/scatter-process-gather/src/code.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/python/scatter-process-gather/test/test.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/utils.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/utils/__init__.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/utils/batch_utils.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/utils/completer.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/utils/config.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/utils/describe.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/utils/exec_utils.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/utils/executable_unbuilder.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/utils/file_handle.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/utils/file_load_utils.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/utils/genomic_utils.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/utils/job_log_client.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/utils/local_exec_utils.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/utils/pathmatch.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/utils/pretty_print.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/utils/printing.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/utils/resolver.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/utils/spelling_corrector.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/utils/version.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy/workflow_builder.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy.egg-info/SOURCES.txt +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy.egg-info/dependency_links.txt +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy.egg-info/entry_points.txt +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy.egg-info/not-zip-safe +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy.egg-info/requires.txt +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/dxpy.egg-info/top_level.txt +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/requirements.txt +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/requirements_setuptools.txt +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/requirements_test.txt +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/scripts/dx-clone-asset +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/scripts/dx-docker +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/scripts/dx-download-all-inputs +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/scripts/dx-fetch-bundled-depends +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/scripts/dx-generate-dxapp +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/scripts/dx-jobutil-add-output +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/scripts/dx-jobutil-dxlink +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/scripts/dx-jobutil-get-identity-token +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/scripts/dx-jobutil-new-job +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/scripts/dx-jobutil-parse-link +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/scripts/dx-jobutil-report-error +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/scripts/dx-log-stream +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/scripts/dx-mount-all-inputs +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/scripts/dx-notebook-reconnect +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/scripts/dx-print-bash-vars +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/scripts/dx-upload-all-outputs +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/setup.cfg +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/setup.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_batch.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_create_cohort.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_describe.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_dx-docker.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_dx_bash_helpers.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_dx_completion.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_dx_symlink.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_dxabs.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_dxasset.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_dxclient.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_dxpy.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_dxpy_utils.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_dxunpack.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_extract_assay.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_extract_dataset.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_extract_expression.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_extract_somatic.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_nextflow.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_nextflow_ImageRef.py +0 -0
- {dxpy-0.391.0 → dxpy-0.392.0}/test/test_nextflow_ImageRefFactory.py +0 -0
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Author: Aleksandra Zalcman, Andrey Kislyuk, Anurag Biyani, Geet Duggal, Katherine Lai, Kurt Jensen, Marek Hrvol, Ohad Rodeh, Phil Sung
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Author: Aleksandra Zalcman, Andrey Kislyuk, Anurag Biyani, Geet Duggal, Katherine Lai, Kurt Jensen, Marek Hrvol, Ohad Rodeh, Phil Sung
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@@ -153,7 +153,7 @@ class TestDXAppWizard(DXTestCase):
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self.assertEqual(dxapp_json['regionalOptions']['aws:us-east-1']['systemRequirements']['*']['instanceType'],
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InstanceTypesCompleter.default_instance_type.Name)
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self.assertEqual(dxapp_json['runSpec']['distribution'], 'Ubuntu')
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self.assertEqual(dxapp_json['runSpec']['release'], '
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+
self.assertEqual(dxapp_json['runSpec']['release'], '24.04')
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self.assertEqual(dxapp_json['runSpec']['version'], '0')
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self.assertEqual(dxapp_json['runSpec']['interpreter'], 'python3')
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self.assertEqual(dxapp_json['runSpec']['timeoutPolicy']['*']['hours'], 24)
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@@ -1 +0,0 @@
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version = '0.391.0'
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{dxpy-0.391.0 → dxpy-0.392.0}/dxpy/bindings/apollo/schemas/input_arguments_validation_schemas.py
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{dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/Homo_sapiens_genes_manifest_staging.json
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{dxpy-0.391.0 → dxpy-0.392.0}/dxpy/dx_extract_utils/Homo_sapiens_genes_manifest_staging_vep.json
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{dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/bash/scatter-process-gather/dxapp.json
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{dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/bash/scatter-process-gather/src/code.sh
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{dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/python/scatter-process-gather/dxapp.json
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{dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/python/scatter-process-gather/src/code.py
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{dxpy-0.391.0 → dxpy-0.392.0}/dxpy/templating/templates/python/scatter-process-gather/test/test.py
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