dxpy 0.379.0__tar.gz → 0.381.0__tar.gz

{dxpy-0.379.0 → dxpy-0.381.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dxpy
-Version: 0.379.0
+Version: 0.381.0
 Summary: DNAnexus Platform API bindings for Python
 Home-page: https://github.com/dnanexus/dx-toolkit
 Author: Aleksandra Zalcman, Andrey Kislyuk, Anurag Biyani, Geet Duggal, Katherine Lai, Kurt Jensen, Marek Hrvol, Ohad Rodeh, Phil Sung
@@ -21,8 +21,9 @@ Provides-Extra: xattr
 
 dxpy: DNAnexus Python API
 =========================
+[DNAnexus Documentation](https://documentation.dnanexus.com/)
 
-[API Documentation](http://autodoc.dnanexus.com/bindings/python/current/)
+[dxpy API Documentation](http://autodoc.dnanexus.com/bindings/python/current/)
 
 Building
 --------

{dxpy-0.379.0 → dxpy-0.381.0}/Readme.md

@@ -1,7 +1,8 @@
 dxpy: DNAnexus Python API
 =========================
+[DNAnexus Documentation](https://documentation.dnanexus.com/)
 
-[API Documentation](http://autodoc.dnanexus.com/bindings/python/current/)
+[dxpy API Documentation](http://autodoc.dnanexus.com/bindings/python/current/)
 
 Building
 --------

{dxpy-0.379.0 → dxpy-0.381.0}/dxpy/scripts/dx_build_app.py

@@ -1033,7 +1033,7 @@ def get_project_to_check(destination, extra_args):
 
 def verify_nf_license(destination, extra_args):
     dest_project_to_check = get_project_to_check(destination, extra_args)
-    features = dxpy.DXHTTPRequest("/" + dest_project_to_check + "/checkFeatureAccess", {"features": ["dxNextflow"]}).get("features", {})
+    features = dxpy.DXHTTPRequest("/" + dest_project_to_check + "/checkFeatureAccess", {"features": ["dxNextflow"]}, always_retry=True).get("features", {})
     dx_nextflow_lic = features.get("dxNextflow", False)
     if not dx_nextflow_lic:
         raise dxpy.app_builder.AppBuilderException("PermissionDenied: billTo of the applet's destination project must have the dxNextflow feature enabled. For inquiries, please contact support@dnanexus.com")

dxpy-0.381.0/dxpy/toolkit_version.py

@@ -0,0 +1 @@
+version = '0.381.0'

{dxpy-0.379.0 → dxpy-0.381.0}/dxpy.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dxpy
-Version: 0.379.0
+Version: 0.381.0
 Summary: DNAnexus Platform API bindings for Python
 Home-page: https://github.com/dnanexus/dx-toolkit
 Author: Aleksandra Zalcman, Andrey Kislyuk, Anurag Biyani, Geet Duggal, Katherine Lai, Kurt Jensen, Marek Hrvol, Ohad Rodeh, Phil Sung
@@ -21,8 +21,9 @@ Provides-Extra: xattr
 
 dxpy: DNAnexus Python API
 =========================
+[DNAnexus Documentation](https://documentation.dnanexus.com/)
 
-[API Documentation](http://autodoc.dnanexus.com/bindings/python/current/)
+[dxpy API Documentation](http://autodoc.dnanexus.com/bindings/python/current/)
 
 Building
 --------

{dxpy-0.379.0 → dxpy-0.381.0}/test/test_dxclient.py

@@ -5926,7 +5926,7 @@ class TestDXClientFind(DXTestCase):
         self.assertTrue(dxpy.api.org_describe(org_with_billable_activities)["allowBillableActivities"])
         org_without_billable_activities = "org-members_without_billing_rights"
         self.assertFalse(dxpy.api.org_describe(org_without_billable_activities)["allowBillableActivities"])
-        orgs_with_admin = ["org-piratelabs", "org-auth_file_app_download"]
+        orgs_with_admin = ["org-piratelabs", "org-auth_file_app_download", "org-team_odd"]
         for org_with_admin in orgs_with_admin:
             self.assertTrue(dxpy.api.org_describe(org_with_admin)["level"] == "ADMIN")
 
@@ -6696,8 +6696,8 @@ class TestDXClientNewUser(DXTestCase):
                 run(" ".join([cmd, invalid_opts]))
 
         resource_not_found_opts = [
-            "--username {u} --email {e} --first {f} --org does_not_exist".format(
-                u=username, e=email, f=first),
+            "--username {u} --email {e} --first {f} --on-behalf-of {o} --org does_not_exist".format(
+                u=username, e=email, f=first, o=self.org_id),
         ]
         for invalid_opts in resource_not_found_opts:
             with self.assertRaisesRegex(subprocess.CalledProcessError,
@@ -6740,16 +6740,15 @@ class TestDXClientNewUser(DXTestCase):
         # no org specified
         with self.assertRaisesRegex(subprocess.CalledProcessError,
                                     "error: argument --on-behalf-of: expected one argument"):   
-            run(" ".join([cmd, baseargs,"--on-behalf-of" ]))
+            run(" ".join([cmd, baseargs, "--on-behalf-of"]))
         # creating user on behalf of org that does not exist 
         with self.assertRaisesRegex(subprocess.CalledProcessError,
                                         "ResourceNotFound"):
-            run(" ".join([cmd, baseargs,"--on-behalf-of org-does_not_exist"]))
+            run(" ".join([cmd, baseargs, "--on-behalf-of org-does_not_exist"]))
         # creating user for org in which the adder does not have ADMIN permissions
         with self.assertRaisesRegex(subprocess.CalledProcessError,
                                     "(PermissionDenied)|(ResourceNotFound)"):
-            run(" ".join([cmd, baseargs,"--on-behalf-of org-dnanexus"]))
-
+            run(" ".join([cmd, baseargs, "--on-behalf-of org-dnanexus"]))
 
     def test_self_signup_negative(self):
         # How to unset context?
@@ -6793,7 +6792,7 @@ class TestDXClientNewUser(DXTestCase):
 
         # Grant default org membership level and permission flags.
         username, email = generate_unique_username_email()
-        user_id = run("{cmd} --username {u} --email {e} --first {f} --org {o} --brief".format(
+        user_id = run("{cmd} --username {u} --email {e} --first {f} --on-behalf-of {o} --org {o} --brief".format(
                       cmd=cmd, u=username, e=email, f=first,
                       o=self.org_id)).strip()
         self._assert_user_desc(user_id, {"first": first})
@@ -6811,7 +6810,7 @@ class TestDXClientNewUser(DXTestCase):
         # has uppercase chars.
         username, email = generate_unique_username_email()
         username = username.upper()
-        user_id = run("{cmd} --username {u} --email {e} --first {f} --org {o} --brief".format(
+        user_id = run("{cmd} --username {u} --email {e} --first {f} --on-behalf-of {o} --org {o} --brief".format(
                       cmd=cmd, u=username, e=email, f=first,
                       o=self.org_id)).strip()
         self._assert_user_desc(user_id, {"first": first})
@@ -6827,7 +6826,7 @@ class TestDXClientNewUser(DXTestCase):
 
         # Grant custom org membership level and permission flags.
         username, email = generate_unique_username_email()
-        user_id = run("{cmd} --username {u} --email {e} --first {f} --org {o} --level {l} --allow-billable-activities --no-app-access --project-access {pa} --brief".format(
+        user_id = run("{cmd} --username {u} --email {e} --first {f} --on-behalf-of {o} --org {o} --level {l} --allow-billable-activities --no-app-access --project-access {pa} --brief".format(
                       cmd=cmd, u=username, e=email, f=first,
                       o=self.org_id, l="MEMBER", pa="VIEW")).strip()
         self._assert_user_desc(user_id, {"first": first})
@@ -6844,7 +6843,7 @@ class TestDXClientNewUser(DXTestCase):
         # Grant ADMIN org membership level; ignore all other org permission
         # options.
         username, email = generate_unique_username_email()
-        user_id = run("{cmd} --username {u} --email {e} --first {f} --org {o} --level {l} --no-app-access --project-access {pa} --brief".format(
+        user_id = run("{cmd} --username {u} --email {e} --first {f} --on-behalf-of {o} --org {o} --level {l} --no-app-access --project-access {pa} --brief".format(
                       cmd=cmd, u=username, e=email, f=first,
                       o=self.org_id, l="ADMIN", pa="VIEW")).strip()
         self._assert_user_desc(user_id, {"first": first})

dxpy-0.379.0/dxpy/toolkit_version.py

@@ -1 +0,0 @@
-version = '0.379.0'