dxpy 0.376.0__tar.gz → 0.378.0__tar.gz

{dxpy-0.376.0 → dxpy-0.378.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dxpy
-Version: 0.376.0
+Version: 0.378.0
 Summary: DNAnexus Platform API bindings for Python
 Home-page: https://github.com/dnanexus/dx-toolkit
 Author: Aleksandra Zalcman, Andrey Kislyuk, Anurag Biyani, Geet Duggal, Katherine Lai, Kurt Jensen, Marek Hrvol, Ohad Rodeh, Phil Sung

{dxpy-0.376.0 → dxpy-0.378.0}/dxpy/bindings/dxproject.py

@@ -314,7 +314,7 @@ class DXProject(DXContainer):
         :param external_upload_restricted: If provided, whether project members can upload data to project from external sources, e.g. outside of job
         :type external_upload_restricted: boolean
         :param default_symlink: If provided, the details needed to have writable symlinks in the project. Dict must include drive, container, and optional prefix.
-        : type default_symlink: dict
+        :type default_symlink: dict
 
         Creates a new project. Initially only the user performing this action
         will be in the permissions/member list, with ADMINISTER access.

dxpy-0.378.0/dxpy/nextflow/nextaur_assets.json

@@ -0,0 +1,8 @@
+{
+    "aws:ap-southeast-2": "record-GkBJ6405j8p425gQBZ7k8bQ2",
+    "aws:eu-central-1": "record-GkBJ7xj4Kx3fkX2ZYXZff26K",
+    "aws:eu-west-2-g": "record-GkBJB42K37yxbZz9xg2XFzq9",
+    "aws:us-east-1": "record-GkBJ3380P8VyqFk5Zy7B6j6Z",
+    "azure:westeurope": "record-GkBJJFQBPGZFPxgpG6X19y2V",
+    "azure:westus": "record-GkBJV489GKBFK2fvJBp30QbP"
+}

dxpy-0.378.0/dxpy/nextflow/nextaur_assets.staging.json

@@ -0,0 +1,8 @@
+{
+    "aws:ap-southeast-2": "record-GkBJ06Q5KKF2j13Z10P326PZ",
+    "aws:eu-central-1": "record-GkBJ1jj4KXKxZ6KZkbqBv4k1",
+    "aws:eu-west-2-g": "record-GkBJ33XK7pkkY6JZ29zFZ9pV",
+    "aws:us-east-1": "record-GkB8gQj0J43977ZQ6z8gP7kq",
+    "azure:westeurope": "record-GkBJ688BkjvGx6q414zKjzzx",
+    "azure:westus": "record-GkBJ9X09pP8J8ZjzVGbPQBK0"
+}

{dxpy-0.376.0 → dxpy-0.378.0}/dxpy/nextflow/nextflow_utils.py

@@ -145,7 +145,7 @@ def get_nextflow_assets(region):
             nextaur = json.load(nextaur_f)[region]
             nextflow = json.load(nextflow_f)[region]
             awscli = json.load(awscli_f)[region]
-        dxpy.describe(nextaur, fields={})  # existence check
+        dxpy.describe(nextflow, fields={})  # existence check
         return nextaur, nextflow, awscli
     except ResourceNotFound:
         nextaur_assets = path.join(nextflow_basepath, "nextaur_assets.staging.json")

{dxpy-0.376.0 → dxpy-0.378.0}/dxpy/scripts/dx.py

@@ -4119,27 +4119,6 @@ def ssh(args, ssh_config_verified=False):
         print(fill(tip.format(job_id=args.job_id)))
     exit(exit_code)
 
-def upgrade(args):
-    if len(args.args) == 0:
-        try:
-            greeting = dxpy.api.system_greet({'client': 'dxclient', 'version': 'v'+dxpy.TOOLKIT_VERSION}, auth=None)
-            if greeting['update']['available']:
-                recommended_version = greeting['update']['version']
-            else:
-                err_exit("Your SDK is up to date.", code=0)
-        except default_expected_exceptions as e:
-            print(e)
-            recommended_version = "current"
-        print("Upgrading to", recommended_version)
-        args.args = [recommended_version]
-
-    try:
-        cmd = os.path.join(os.environ['DNANEXUS_HOME'], 'build', 'upgrade.sh')
-        args.args.insert(0, cmd)
-        os.execv(cmd, args.args)
-    except:
-        err_exit()
-
 def generate_batch_inputs(args):
 
     # Internally restricted maximum batch size for a TSV
@@ -6346,16 +6325,6 @@ parser_api.set_defaults(func=api)
 # parser_api.completer = TODO
 register_parser(parser_api)
 
-#####################################
-# upgrade
-#####################################
-parser_upgrade = subparsers.add_parser('upgrade', help='Upgrade dx-toolkit (the DNAnexus SDK and this program)',
-                                       description='Upgrades dx-toolkit (the DNAnexus SDK and this program) to the latest recommended version, or to a specified version and platform.',
-                                       prog='dx upgrade')
-parser_upgrade.add_argument('args', nargs='*')
-parser_upgrade.set_defaults(func=upgrade)
-register_parser(parser_upgrade)
-
 #####################################
 # generate_batch_inputs
 #####################################