dxpy 0.375.1__tar.gz → 0.376.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (187) hide show
  1. {dxpy-0.375.1 → dxpy-0.376.0}/PKG-INFO +1 -1
  2. dxpy-0.376.0/dxpy/toolkit_version.py +1 -0
  3. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy.egg-info/PKG-INFO +1 -1
  4. dxpy-0.375.1/dxpy/toolkit_version.py +0 -1
  5. {dxpy-0.375.1 → dxpy-0.376.0}/MANIFEST.in +0 -0
  6. {dxpy-0.375.1 → dxpy-0.376.0}/Readme.md +0 -0
  7. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/__init__.py +0 -0
  8. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/api.py +0 -0
  9. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/app_builder.py +0 -0
  10. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/app_categories.py +0 -0
  11. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/asset_builder.py +0 -0
  12. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/__init__.py +0 -0
  13. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/apollo/__init__.py +0 -0
  14. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/apollo/cmd_line_options_validator.py +0 -0
  15. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/apollo/data_transformations.py +0 -0
  16. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/apollo/dataset.py +0 -0
  17. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/apollo/json_validation_by_schema.py +0 -0
  18. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/apollo/schemas/__init__.py +0 -0
  19. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/apollo/schemas/assay_filtering_conditions.py +0 -0
  20. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/apollo/schemas/assay_filtering_json_schemas.py +0 -0
  21. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/apollo/schemas/input_arguments_validation_schemas.py +0 -0
  22. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/apollo/vizclient.py +0 -0
  23. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/apollo/vizserver_filters_from_json_parser.py +0 -0
  24. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/apollo/vizserver_payload_builder.py +0 -0
  25. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/auth.py +0 -0
  26. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/download_all_inputs.py +0 -0
  27. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/dxanalysis.py +0 -0
  28. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/dxapp.py +0 -0
  29. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/dxapp_container_functions.py +0 -0
  30. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/dxapplet.py +0 -0
  31. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/dxdatabase.py +0 -0
  32. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/dxdatabase_functions.py +0 -0
  33. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/dxdataobject_functions.py +0 -0
  34. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/dxfile.py +0 -0
  35. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/dxfile_functions.py +0 -0
  36. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/dxglobalworkflow.py +0 -0
  37. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/dxjob.py +0 -0
  38. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/dxproject.py +0 -0
  39. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/dxrecord.py +0 -0
  40. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/dxworkflow.py +0 -0
  41. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/mount_all_inputs.py +0 -0
  42. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/bindings/search.py +0 -0
  43. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/cli/__init__.py +0 -0
  44. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/cli/cp.py +0 -0
  45. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/cli/dataset_utilities.py +0 -0
  46. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/cli/download.py +0 -0
  47. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/cli/exec_io.py +0 -0
  48. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/cli/help_messages.py +0 -0
  49. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/cli/org.py +0 -0
  50. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/cli/output_handling.py +0 -0
  51. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/cli/parsers.py +0 -0
  52. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/cli/workflow.py +0 -0
  53. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/compat.py +0 -0
  54. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/Homo_sapiens_genes_manifest.json +0 -0
  55. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/Homo_sapiens_genes_manifest_staging.json +0 -0
  56. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/Homo_sapiens_genes_manifest_staging_vep.json +0 -0
  57. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/Homo_sapiens_genes_manifest_vep.json +0 -0
  58. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/__init__.py +0 -0
  59. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/cohort_filter_payload.py +0 -0
  60. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/column_conditions.json +0 -0
  61. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/column_conversion.json +0 -0
  62. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/filter_to_payload.py +0 -0
  63. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/germline_utils.py +0 -0
  64. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/input_validation.py +0 -0
  65. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/input_validation_somatic.py +0 -0
  66. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/retrieve_allele_schema.json +0 -0
  67. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/retrieve_annotation_schema.json +0 -0
  68. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/retrieve_bins.py +0 -0
  69. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/retrieve_genotype_schema.json +0 -0
  70. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/return_columns_allele.json +0 -0
  71. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/return_columns_annotation.json +0 -0
  72. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/return_columns_genotype.json +0 -0
  73. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/return_columns_genotype_only.json +0 -0
  74. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dx_extract_utils/somatic_filter_payload.py +0 -0
  75. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/dxlog.py +0 -0
  76. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/exceptions.py +0 -0
  77. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/executable_builder.py +0 -0
  78. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/nextflow/ImageRef.py +0 -0
  79. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/nextflow/ImageRefFactory.py +0 -0
  80. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/nextflow/__init__.py +0 -0
  81. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/nextflow/awscli_assets.json +0 -0
  82. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/nextflow/awscli_assets.staging.json +0 -0
  83. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/nextflow/collect_images.py +0 -0
  84. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/nextflow/nextaur_assets.json +0 -0
  85. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/nextflow/nextaur_assets.staging.json +0 -0
  86. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/nextflow/nextflow_assets.json +0 -0
  87. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/nextflow/nextflow_assets.staging.json +0 -0
  88. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/nextflow/nextflow_builder.py +0 -0
  89. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/nextflow/nextflow_templates.py +0 -0
  90. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/nextflow/nextflow_utils.py +0 -0
  91. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/packages/__init__.py +0 -0
  92. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/scripts/__init__.py +0 -0
  93. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/scripts/dx.py +0 -0
  94. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/scripts/dx_app_wizard.py +0 -0
  95. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/scripts/dx_build_app.py +0 -0
  96. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/scripts/dx_build_applet.py +0 -0
  97. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/ssh_tunnel_app_support.py +0 -0
  98. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/system_requirements.py +0 -0
  99. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/__init__.py +0 -0
  100. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/bash.py +0 -0
  101. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/python.py +0 -0
  102. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/templates/Readme.md +0 -0
  103. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/templates/bash/basic/dxapp.json +0 -0
  104. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/templates/bash/basic/src/code.sh +0 -0
  105. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/templates/bash/parallelized/dxapp.json +0 -0
  106. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/templates/bash/parallelized/src/code.sh +0 -0
  107. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/templates/bash/scatter-process-gather/dxapp.json +0 -0
  108. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/templates/bash/scatter-process-gather/src/code.sh +0 -0
  109. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/templates/nextflow/dxapp.json +0 -0
  110. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/templates/nextflow/src/nextflow.sh +0 -0
  111. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/templates/python/basic/dxapp.json +0 -0
  112. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/templates/python/basic/src/code.py +0 -0
  113. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/templates/python/basic/test/test.py +0 -0
  114. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/templates/python/parallelized/dxapp.json +0 -0
  115. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/templates/python/parallelized/src/code.py +0 -0
  116. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/templates/python/parallelized/test/test.py +0 -0
  117. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/templates/python/scatter-process-gather/dxapp.json +0 -0
  118. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/templates/python/scatter-process-gather/src/code.py +0 -0
  119. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/templates/python/scatter-process-gather/test/test.py +0 -0
  120. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/templating/utils.py +0 -0
  121. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/utils/__init__.py +0 -0
  122. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/utils/batch_utils.py +0 -0
  123. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/utils/completer.py +0 -0
  124. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/utils/config.py +0 -0
  125. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/utils/describe.py +0 -0
  126. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/utils/exec_utils.py +0 -0
  127. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/utils/executable_unbuilder.py +0 -0
  128. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/utils/file_handle.py +0 -0
  129. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/utils/file_load_utils.py +0 -0
  130. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/utils/genomic_utils.py +0 -0
  131. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/utils/job_log_client.py +0 -0
  132. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/utils/local_exec_utils.py +0 -0
  133. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/utils/pathmatch.py +0 -0
  134. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/utils/pretty_print.py +0 -0
  135. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/utils/printing.py +0 -0
  136. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/utils/resolver.py +0 -0
  137. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/utils/spelling_corrector.py +0 -0
  138. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/utils/version.py +0 -0
  139. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy/workflow_builder.py +0 -0
  140. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy.egg-info/SOURCES.txt +0 -0
  141. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy.egg-info/dependency_links.txt +0 -0
  142. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy.egg-info/entry_points.txt +0 -0
  143. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy.egg-info/not-zip-safe +0 -0
  144. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy.egg-info/requires.txt +0 -0
  145. {dxpy-0.375.1 → dxpy-0.376.0}/dxpy.egg-info/top_level.txt +0 -0
  146. {dxpy-0.375.1 → dxpy-0.376.0}/requirements.txt +0 -0
  147. {dxpy-0.375.1 → dxpy-0.376.0}/requirements_setuptools.txt +0 -0
  148. {dxpy-0.375.1 → dxpy-0.376.0}/requirements_test.txt +0 -0
  149. {dxpy-0.375.1 → dxpy-0.376.0}/scripts/dx-clone-asset +0 -0
  150. {dxpy-0.375.1 → dxpy-0.376.0}/scripts/dx-docker +0 -0
  151. {dxpy-0.375.1 → dxpy-0.376.0}/scripts/dx-download-all-inputs +0 -0
  152. {dxpy-0.375.1 → dxpy-0.376.0}/scripts/dx-fetch-bundled-depends +0 -0
  153. {dxpy-0.375.1 → dxpy-0.376.0}/scripts/dx-generate-dxapp +0 -0
  154. {dxpy-0.375.1 → dxpy-0.376.0}/scripts/dx-jobutil-add-output +0 -0
  155. {dxpy-0.375.1 → dxpy-0.376.0}/scripts/dx-jobutil-dxlink +0 -0
  156. {dxpy-0.375.1 → dxpy-0.376.0}/scripts/dx-jobutil-get-identity-token +0 -0
  157. {dxpy-0.375.1 → dxpy-0.376.0}/scripts/dx-jobutil-new-job +0 -0
  158. {dxpy-0.375.1 → dxpy-0.376.0}/scripts/dx-jobutil-parse-link +0 -0
  159. {dxpy-0.375.1 → dxpy-0.376.0}/scripts/dx-jobutil-report-error +0 -0
  160. {dxpy-0.375.1 → dxpy-0.376.0}/scripts/dx-log-stream +0 -0
  161. {dxpy-0.375.1 → dxpy-0.376.0}/scripts/dx-mount-all-inputs +0 -0
  162. {dxpy-0.375.1 → dxpy-0.376.0}/scripts/dx-notebook-reconnect +0 -0
  163. {dxpy-0.375.1 → dxpy-0.376.0}/scripts/dx-print-bash-vars +0 -0
  164. {dxpy-0.375.1 → dxpy-0.376.0}/scripts/dx-upload-all-outputs +0 -0
  165. {dxpy-0.375.1 → dxpy-0.376.0}/setup.cfg +0 -0
  166. {dxpy-0.375.1 → dxpy-0.376.0}/setup.py +0 -0
  167. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_batch.py +0 -0
  168. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_create_cohort.py +0 -0
  169. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_describe.py +0 -0
  170. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_dx-docker.py +0 -0
  171. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_dx_app_wizard.py +0 -0
  172. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_dx_bash_helpers.py +0 -0
  173. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_dx_completion.py +0 -0
  174. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_dx_symlink.py +0 -0
  175. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_dxabs.py +0 -0
  176. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_dxasset.py +0 -0
  177. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_dxclient.py +0 -0
  178. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_dxpy.py +0 -0
  179. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_dxpy_utils.py +0 -0
  180. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_dxunpack.py +0 -0
  181. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_extract_assay.py +0 -0
  182. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_extract_dataset.py +0 -0
  183. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_extract_expression.py +0 -0
  184. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_extract_somatic.py +0 -0
  185. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_nextflow.py +0 -0
  186. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_nextflow_ImageRef.py +0 -0
  187. {dxpy-0.375.1 → dxpy-0.376.0}/test/test_nextflow_ImageRefFactory.py +0 -0
{dxpy-0.375.1 → dxpy-0.376.0}/PKG-INFO RENAMED
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  Metadata-Version: 2.1
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  Name: dxpy
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- Version: 0.375.1
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  Summary: DNAnexus Platform API bindings for Python
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  Home-page: https://github.com/dnanexus/dx-toolkit
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  Author: Aleksandra Zalcman, Andrey Kislyuk, Anurag Biyani, Geet Duggal, Katherine Lai, Kurt Jensen, Marek Hrvol, Ohad Rodeh, Phil Sung
dxpy-0.376.0/dxpy/toolkit_version.py ADDED
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{dxpy-0.375.1 → dxpy-0.376.0}/dxpy.egg-info/PKG-INFO RENAMED
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  Metadata-Version: 2.1
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  Name: dxpy
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- Version: 0.375.1
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  Summary: DNAnexus Platform API bindings for Python
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  Home-page: https://github.com/dnanexus/dx-toolkit
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  Author: Aleksandra Zalcman, Andrey Kislyuk, Anurag Biyani, Geet Duggal, Katherine Lai, Kurt Jensen, Marek Hrvol, Ohad Rodeh, Phil Sung
dxpy-0.375.1/dxpy/toolkit_version.py DELETED
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{dxpy-0.375.1 → dxpy-0.376.0}/MANIFEST.in RENAMED
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{dxpy-0.375.1 → dxpy-0.376.0}/Readme.md RENAMED
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{dxpy-0.375.1 → dxpy-0.376.0}/dxpy/__init__.py RENAMED
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