dxpy 0.367.0__tar.gz → 0.368.1__tar.gz

{dxpy-0.367.0 → dxpy-0.368.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dxpy
-Version: 0.367.0
+Version: 0.368.1
 Summary: DNAnexus Platform API bindings for Python
 Home-page: https://github.com/dnanexus/dx-toolkit
 Author: Aleksandra Zalcman, Andrey Kislyuk, Anurag Biyani, Geet Duggal, Katherine Lai, Kurt Jensen, Marek Hrvol, Ohad Rodeh, Phil Sung
@@ -14,7 +14,7 @@ Classifier: Operating System :: POSIX
 Classifier: Programming Language :: Python
 Classifier: Programming Language :: Unix Shell
 Classifier: Topic :: Software Development :: Libraries :: Python Modules
-Requires-Python: >=3.6
+Requires-Python: >=3.8
 Description-Content-Type: text/markdown
 Provides-Extra: pandas
 Provides-Extra: xattr
@@ -77,7 +77,7 @@ Other useful resources:
 
 Python version compatibility
 ----------------------------
-dxpy is supported on Python 3 (3.6+)
+dxpy is supported on Python 3 (3.8+)
 
 Convention for Python scripts that are also modules
 ---------------------------------------------------

{dxpy-0.367.0 → dxpy-0.368.1}/Readme.md

@@ -56,7 +56,7 @@ Other useful resources:
 
 Python version compatibility
 ----------------------------
-dxpy is supported on Python 3 (3.6+)
+dxpy is supported on Python 3 (3.8+)
 
 Convention for Python scripts that are also modules
 ---------------------------------------------------

{dxpy-0.367.0 → dxpy-0.368.1}/dxpy/bindings/apollo/vizclient.py

@@ -23,9 +23,9 @@ class VizClient(object):
                 else:
                     err_message = response["error"]
                 self.error_handler(str(err_message))
+            return response
         except Exception as details:
             self.error_handler(str(details))
-        return response
 
     def get_data(self, payload, record_id):
         resource_url = "{}/data/3.0/{}/raw".format(self.url, record_id)

dxpy-0.368.1/dxpy/nextflow/nextaur_assets.json

@@ -0,0 +1,8 @@
+{
+    "aws:ap-southeast-2": "record-GbqXBp05PjXYQGxJKgPzGKYJ",
+    "aws:eu-central-1": "record-GbqXFGQ4Q025p587JqJgfGkb",
+    "aws:eu-west-2-g": "record-GbqXJ0pK2X1pz87z51Q64QGX",
+    "aws:us-east-1": "record-GbqX1Qj096VFgVYG0X1Jv4Bb",
+    "azure:westeurope": "record-GbqXQGjBkq53bzV9jFb28369",
+    "azure:westus": "record-GbqXY1Q99731Zxq2xQ7GxBzX"
+}

dxpy-0.368.1/dxpy/nextflow/nextaur_assets.staging.json

@@ -0,0 +1,8 @@
+{
+    "aws:ap-southeast-2": "record-GbqVG3j5476zQ4p994GJ2JGv",
+    "aws:eu-central-1": "record-GbqVK484xqZkJj5v8X8QgP5Q",
+    "aws:eu-west-2-g": "record-GbqVPQ2KJv5G7gpgykYxJBkp",
+    "aws:us-east-1": "record-GbqV9Pj0YQg98FJq0VqjF2pZ",
+    "azure:westeurope": "record-GbqVX3QBf5g471k20pKZkpYz",
+    "azure:westus": "record-GbqVZyj9vvk606j2PjfP0pBx"
+}

dxpy-0.368.1/dxpy/nextflow/nextflow_assets.json

@@ -0,0 +1,8 @@
+{
+    "aws:ap-southeast-2": "record-GbqXZx85YkJYkXbJGx2712B0",
+    "aws:eu-central-1": "record-GbqXbKQ4f06Fb6yFVJ2jf91z",
+    "aws:eu-west-2-g": "record-GbqXffpKbPkPGyqxBKj4bkGP",
+    "aws:us-east-1": "record-GbqX3YQ0zF96QY6XkKgGj6zJ",
+    "azure:westeurope": "record-GbqXq50By9ZZF5JpzzvZVX3F",
+    "azure:westus": "record-GbqXy9Q91ggZQg52Z4Ffk84q"
+}

dxpy-0.368.1/dxpy/nextflow/nextflow_assets.staging.json

@@ -0,0 +1,8 @@
+{
+    "aws:ap-southeast-2": "record-GbqVfV85P3j22G98Qk3Pbp54",
+    "aws:eu-central-1": "record-GbqVj684y262YXY4gkXP12YK",
+    "aws:eu-west-2-g": "record-GbqVkkpKqzF471k20pKZkpZJ",
+    "aws:us-east-1": "record-GbqVBJ80g9g6vzxj51xYzYj6",
+    "azure:westeurope": "record-GbqVv98B1PXF5g7GGYVqfFjx",
+    "azure:westus": "record-GbqVz1Q9K7yp85ZVKQVbVgz7"
+}

{dxpy-0.367.0 → dxpy-0.368.1}/dxpy/templating/templates/nextflow/src/nextflow.sh

@@ -293,7 +293,7 @@ main() {
 
   # If cache is used, it will be stored in the project at
   DX_CACHEDIR=$DX_PROJECT_CONTEXT_ID:/.nextflow_cache_db
-  NXF_PLUGINS_VERSION=1.6.9
+  NXF_PLUGINS_VERSION=1.7.0
 
   # unset properties
   cloned_job_properties=$(dx describe "$DX_JOB_ID" --json | jq -r '.properties | to_entries[] | select(.key | startswith("nextflow")) | .key')

dxpy-0.368.1/dxpy/toolkit_version.py

@@ -0,0 +1 @@
+version = '0.368.1'

{dxpy-0.367.0 → dxpy-0.368.1}/dxpy.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dxpy
-Version: 0.367.0
+Version: 0.368.1
 Summary: DNAnexus Platform API bindings for Python
 Home-page: https://github.com/dnanexus/dx-toolkit
 Author: Aleksandra Zalcman, Andrey Kislyuk, Anurag Biyani, Geet Duggal, Katherine Lai, Kurt Jensen, Marek Hrvol, Ohad Rodeh, Phil Sung
@@ -14,7 +14,7 @@ Classifier: Operating System :: POSIX
 Classifier: Programming Language :: Python
 Classifier: Programming Language :: Unix Shell
 Classifier: Topic :: Software Development :: Libraries :: Python Modules
-Requires-Python: >=3.6
+Requires-Python: >=3.8
 Description-Content-Type: text/markdown
 Provides-Extra: pandas
 Provides-Extra: xattr
@@ -77,7 +77,7 @@ Other useful resources:
 
 Python version compatibility
 ----------------------------
-dxpy is supported on Python 3 (3.6+)
+dxpy is supported on Python 3 (3.8+)
 
 Convention for Python scripts that are also modules
 ---------------------------------------------------

dxpy-0.368.1/dxpy.egg-info/requires.txt

@@ -0,0 +1,23 @@
+websocket-client==0.54.0
+python-dateutil>=2.5
+psutil>=5.9.3
+certifi
+urllib3<2.2,>=1.25
+
+[:python_version < "3.10"]
+argcomplete<2.0.0,>=1.9.4
+
+[:python_version >= "3.10"]
+argcomplete>=2.0.0
+
+[:sys_platform == "win32"]
+pyreadline3==3.4.1
+colorama<=0.4.6,>=0.4.4
+
+[pandas]
+pandas==1.3.5
+
+[xattr]
+
+[xattr:sys_platform == "linux2" or sys_platform == "linux"]
+xattr==0.10.1

dxpy-0.368.1/requirements.txt

@@ -0,0 +1,9 @@
+argcomplete>=2.0.0; python_version >= "3.10"
+argcomplete>=1.9.4,<2.0.0; python_version < "3.10"
+websocket-client==0.54.0
+python-dateutil>=2.5
+psutil>=5.9.3
+certifi
+urllib3>=1.25,<2.2
+pyreadline3==3.4.1; sys_platform == "win32"
+colorama>=0.4.4,<=0.4.6; sys_platform == "win32"

dxpy-0.368.1/requirements_setuptools.txt

@@ -0,0 +1,3 @@
+pip==23.3.1
+setuptools==69.0.2
+wheel==0.42.0

{dxpy-0.367.0 → dxpy-0.368.1}/setup.py

@@ -97,10 +97,10 @@ setup(
     entry_points = {
         "console_scripts": scripts,
     },
-    python_requires = '>=3.6',
+    python_requires = '>=3.8',
     install_requires = dependencies,
     extras_require={
-        'pandas': ["pandas==1.3.5; python_version>='3.7'", "pandas>=0.23.3,<=0.25.3; python_version>='3.5.3' and python_version<'3.7'"],
+        'pandas': ["pandas==1.3.5"],
         'xattr': ["xattr==0.10.1; sys_platform == 'linux2' or sys_platform == 'linux'"]
     },
     tests_require = test_dependencies,

{dxpy-0.367.0 → dxpy-0.368.1}/test/test_nextflow.py

@@ -99,7 +99,7 @@ class TestNextflowTemplates(DXTestCase):
 
     def test_dxapp(self):
         dxapp = get_nextflow_dxapp()
-        self.assertEqual(dxapp.get("name"), "Nextflow pipeline")
+        self.assertEqual(dxapp.get("name"), "python")  # name is by default set to the resources directory name
         self.assertEqual(dxapp.get("details", {}).get("repository"), "local")
 
     @parameterized.expand([

dxpy-0.367.0/dxpy/nextflow/nextaur_assets.json

@@ -1,8 +0,0 @@
-{
-    "aws:ap-southeast-2": "record-Gb0gXQj50g6b1j928pJQ8QBj",
-    "aws:eu-central-1": "record-Gb0gQV84yZp6pzGp4JQJ53VV",
-    "aws:eu-west-2-g": "record-Gb0gZ2pK9vy1j8jk8J09qVKx",
-    "aws:us-east-1": "record-Gb0gZPj0gX4JK701KpfbBYGV",
-    "azure:westeurope": "record-Gb0gg0QBFvBx4x04gx76Xx4P",
-    "azure:westus": "record-Gb0gkx09Bb08qq5vkF1ZvJX4"
-}

dxpy-0.367.0/dxpy/nextflow/nextaur_assets.staging.json

@@ -1,8 +0,0 @@
-{
-    "aws:ap-southeast-2": "record-Gb53JYj5Gxk7z6xggK6qxq1K",
-    "aws:eu-central-1": "record-Gb53PJj4Q67q34JzbxK3G51g",
-    "aws:eu-west-2-g": "record-Gb53Qx2KjP0JVbQ0xVZxZYq2",
-    "aws:us-east-1": "record-Gb53Fk00VYYyFBpQjxy65jYY",
-    "azure:westeurope": "record-Gb53YF0B54bb886BZj9jv16v",
-    "azure:westus": "record-Gb53bkj9Yk85kQjfJZJKJPQ6"
-}

dxpy-0.367.0/dxpy/nextflow/nextflow_assets.json

@@ -1,8 +0,0 @@
-{
-    "aws:ap-southeast-2": "record-GQ49JfQ5Ykz2X9X17FJ05234",
-    "aws:eu-central-1": "record-GQ49KjQ40Yp7kPpzGQXZP3Jj",
-    "aws:eu-west-2-g": "record-GQ49Q52KgBvXX9X17FJ0528Y",
-    "aws:us-east-1": "record-GQ49F900GQP33QJxYYX4YY5G",
-    "azure:westeurope": "record-GQ49XzQB1384Z9YqyG17gXfP",
-    "azure:westus": "record-GQ49bjj95BGQ38B3gpQ9vjbq"
-}

dxpy-0.367.0/dxpy/nextflow/nextflow_assets.staging.json

@@ -1,8 +0,0 @@
-{
-    "aws:ap-southeast-2": "record-GZvYK005pk0QG4FxZXqqgjKP",
-    "aws:eu-central-1": "record-GZvYPX04y9B66jXxk28qG7F0",
-    "aws:eu-west-2-g": "record-GZvYQgpKB7Y8pQJY8KbZF7kq",
-    "aws:us-east-1": "record-GZvY8bQ0057qKVy7G5G071jB",
-    "azure:westeurope": "record-GZvYYPjBF86q711V5VjGzFQ0",
-    "azure:westus": "record-GZvYfB09gx8gZpf049jPJQYg"
-}

dxpy-0.367.0/dxpy/toolkit_version.py

@@ -1 +0,0 @@
-version = '0.367.0'

dxpy-0.367.0/dxpy.egg-info/requires.txt

@@ -1,33 +0,0 @@
-websocket-client==0.54.0
-python-dateutil>=2.5
-psutil>=5.9.3
-certifi
-urllib3<2.2,>=1.26.18
-
-[:python_version < "3.10"]
-argcomplete<2.0.0,>=1.9.4
-
-[:python_version >= "3.10"]
-argcomplete>=2.0.0
-
-[:sys_platform == "win32" and python_version >= "3.5"]
-pyreadline3==3.4.1
-
-[:sys_platform == "win32" and python_version >= "3.5" and python_version < "3.7"]
-colorama==0.4.4
-
-[:sys_platform == "win32" and python_version >= "3.7"]
-colorama<=0.4.6,>=0.4.4
-
-[pandas]
-
-[pandas:python_version >= "3.5.3" and python_version < "3.7"]
-pandas<=0.25.3,>=0.23.3
-
-[pandas:python_version >= "3.7"]
-pandas==1.3.5
-
-[xattr]
-
-[xattr:sys_platform == "linux2" or sys_platform == "linux"]
-xattr==0.10.1

dxpy-0.367.0/requirements.txt

@@ -1,10 +0,0 @@
-argcomplete>=2.0.0; python_version >= "3.10"
-argcomplete>=1.9.4,<2.0.0; python_version < "3.10"
-websocket-client==0.54.0
-python-dateutil>=2.5
-psutil>=5.9.3
-certifi
-urllib3>=1.26.18,<2.2
-pyreadline3==3.4.1; sys_platform == "win32" and python_version >= "3.5"
-colorama==0.4.4; sys_platform == "win32" and python_version >= "3.5" and python_version < "3.7"
-colorama>=0.4.4,<=0.4.6; sys_platform == "win32" and python_version >= "3.7"

dxpy-0.367.0/requirements_setuptools.txt

@@ -1,3 +0,0 @@
-pip==21.3.1
-setuptools==68.0.0
-wheel==0.41.3