dummy-spatialdata 0.1.7__tar.gz → 0.1.8__tar.gz

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Files changed (20) hide show
  1. {dummy_spatialdata-0.1.7 → dummy_spatialdata-0.1.8}/PKG-INFO +1 -1
  2. {dummy_spatialdata-0.1.7 → dummy_spatialdata-0.1.8}/pyproject.toml +1 -1
  3. {dummy_spatialdata-0.1.7 → dummy_spatialdata-0.1.8}/src/dummy_spatialdata/generate_transformations.py +12 -0
  4. {dummy_spatialdata-0.1.7 → dummy_spatialdata-0.1.8}/tests/test_transformations.py +3 -0
  5. {dummy_spatialdata-0.1.7 → dummy_spatialdata-0.1.8}/.gitignore +0 -0
  6. {dummy_spatialdata-0.1.7 → dummy_spatialdata-0.1.8}/README.md +0 -0
  7. {dummy_spatialdata-0.1.7 → dummy_spatialdata-0.1.8}/examples/bird-color.png +0 -0
  8. {dummy_spatialdata-0.1.7 → dummy_spatialdata-0.1.8}/examples/bird.png +0 -0
  9. {dummy_spatialdata-0.1.7 → dummy_spatialdata-0.1.8}/examples/nuclei.tif +0 -0
  10. {dummy_spatialdata-0.1.7 → dummy_spatialdata-0.1.8}/src/dummy_spatialdata/__init__.py +0 -0
  11. {dummy_spatialdata-0.1.7 → dummy_spatialdata-0.1.8}/src/dummy_spatialdata/generate_dataset.py +0 -0
  12. {dummy_spatialdata-0.1.7 → dummy_spatialdata-0.1.8}/src/dummy_spatialdata/generate_imagemodel.py +0 -0
  13. {dummy_spatialdata-0.1.7 → dummy_spatialdata-0.1.8}/src/dummy_spatialdata/generate_labelmodel.py +0 -0
  14. {dummy_spatialdata-0.1.7 → dummy_spatialdata-0.1.8}/src/dummy_spatialdata/generate_pointmodel.py +0 -0
  15. {dummy_spatialdata-0.1.7 → dummy_spatialdata-0.1.8}/src/dummy_spatialdata/generate_shapemodel.py +0 -0
  16. {dummy_spatialdata-0.1.7 → dummy_spatialdata-0.1.8}/src/dummy_spatialdata/generate_tablemodel.py +0 -0
  17. {dummy_spatialdata-0.1.7 → dummy_spatialdata-0.1.8}/src/dummy_spatialdata/utils.py +0 -0
  18. {dummy_spatialdata-0.1.7 → dummy_spatialdata-0.1.8}/tests/__init__.py +0 -0
  19. {dummy_spatialdata-0.1.7 → dummy_spatialdata-0.1.8}/tests/test_basic.py +0 -0
  20. {dummy_spatialdata-0.1.7 → dummy_spatialdata-0.1.8}/tests/test_models.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: dummy-spatialdata
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- Version: 0.1.7
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+ Version: 0.1.8
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  Summary: A package for creating arbitrary spatialdata for testing purposes.
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  Project-URL: Documentation, https://dummy-spatialdata.readthedocs.io/
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  Project-URL: Homepage, https://github.com/BIMSBBioinfo/dummy-spatialdata
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
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  [project]
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  name = "dummy-spatialdata"
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- version = "0.1.7"
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+ version = "0.1.8"
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  description = "A package for creating arbitrary spatialdata for testing purposes."
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  readme = "README.md"
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  requires-python = ">=3.12"
@@ -10,6 +10,8 @@ from spatialdata.transformations import (
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  Identity
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  )
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+ import numpy as np
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+
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  def generate_transformations(
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  trans: Optional[dict] = None
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  ) -> list[BaseTransformation]:
@@ -60,6 +62,16 @@ def generate_transformations(
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  tr = Translation([10, 20], axes = ('x', 'y'))
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  elif tr == 'scale':
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  tr = Scale([0.5, 0.5], axes = ('x', 'y'))
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+ elif tr == 'rotation':
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+ theta = np.deg2rad(15)
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+ c = np.cos(theta)
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+ s = np.sin(theta)
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+ tr = Affine(matrix = [
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+ [c, -s, 0],
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+ [s, c, 0],
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+ [0, 0, 1],
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+ ],
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+ input_axes=('x', 'y'), output_axes=('x', 'y'))
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  elif tr == 'affine':
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  tr = Affine(matrix = [
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  [0.5, 0.2, 0],
@@ -62,6 +62,9 @@ def test_transformations():
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  trans = generate_transformations({'global': {'transformations': ['scale'], 'shape': {'x': 1000, 'y': 1000}}})
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  assert isinstance(trans['global'], Scale)
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+ trans = generate_transformations({'global3': {'transformations': ['rotation'], 'shape': {'x': 1000, 'y': 1000}}})
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+ assert isinstance(trans['global3'], Affine) # the rotation is basically returning an Affine transformation, for now
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+
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  trans = generate_transformations({'global3': {'transformations': ['affine'], 'shape': {'x': 1000, 'y': 1000}}})
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  assert isinstance(trans['global3'], Affine)
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