dsimaging-admin 0.3.0__tar.gz → 0.3.2__tar.gz

{dsimaging_admin-0.3.0 → dsimaging_admin-0.3.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: dsimaging-admin
-Version: 0.3.0
+Version: 0.3.2
 Summary: Admin CLI for managing medical imaging datasets in S3/MinIO for DataSHIELD
 Project-URL: Homepage, https://github.com/isglobal-brge/dsimaging-admin
 Project-URL: Repository, https://github.com/isglobal-brge/dsimaging-admin

{dsimaging_admin-0.3.0 → dsimaging_admin-0.3.2}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "dsimaging-admin"
-version = "0.3.0"
+version = "0.3.2"
 description = "Admin CLI for managing medical imaging datasets in S3/MinIO for DataSHIELD"
 readme = "README.md"
 license = "MIT"

{dsimaging_admin-0.3.0 → dsimaging_admin-0.3.2}/src/dsimaging_admin/__init__.py

@@ -1,3 +1,3 @@
 """dsimaging-admin: Admin CLI for managing medical imaging datasets in S3/MinIO."""
 
-__version__ = "0.3.0"
+__version__ = "0.3.2"

{dsimaging_admin-0.3.0 → dsimaging_admin-0.3.2}/src/dsimaging_admin/manifest.py

@@ -321,6 +321,17 @@ def write_manifest_yaml(manifest: dict, path: str):
 def build_hash_index(samples: list[dict], bucket: str, prefix: str,
                      source_path: str = "images") -> pa.Table:
     now = time.strftime("%Y-%m-%dT%H:%M:%SZ")
+    if not samples:
+        return pa.table({
+            "sample_id": pa.array([], type=pa.string()),
+            "uri": pa.array([], type=pa.string()),
+            "content_hash": pa.array([], type=pa.string()),
+            "size": pa.array([], type=pa.int64()),
+            "last_modified": pa.array([], type=pa.string()),
+            "version_id": pa.array([], type=pa.string()),
+            "etag": pa.array([], type=pa.string()),
+            "source_kind": pa.array([], type=pa.string()),
+        })
     return pa.table({
         "sample_id": [s["sample_id"] for s in samples],
         "uri": [
@@ -343,6 +354,15 @@ def build_mask_hash_index(masks: list[dict], bucket: str, prefix: str) -> pa.Tab
 
 
 def build_sample_manifests(samples: list[dict]) -> pa.Table:
+    if not samples:
+        return pa.table({
+            "sample_id": pa.array([], type=pa.string()),
+            "source_kind": pa.array([], type=pa.string()),
+            "primary_uri": pa.array([], type=pa.string()),
+            "files_json": pa.array([], type=pa.string()),
+            "content_hash": pa.array([], type=pa.string()),
+            "n_files": pa.array([], type=pa.int32()),
+        })
     return pa.table({
         "sample_id": [s["sample_id"] for s in samples],
         "source_kind": [s["source_kind"] for s in samples],
@@ -364,6 +384,15 @@ def build_samples_metadata(samples: list[dict],
     image samples become nulls. This keeps the manifest image-led while allowing
     clinical/outcome variables to travel with the dataset.
     """
+    if not samples:
+        base = pa.table({
+            "sample_id": pa.array([], type=pa.string()),
+            "source_kind": pa.array([], type=pa.string()),
+            "n_files": pa.array([], type=pa.int32()),
+        })
+        if extra_metadata is None:
+            return base
+        return _left_join_metadata(base, extra_metadata)
     base = pa.table({
         "sample_id": [s["sample_id"] for s in samples],
         "source_kind": [s["source_kind"] for s in samples],

{dsimaging_admin-0.3.0 → dsimaging_admin-0.3.2}/src/dsimaging_admin/store.py

@@ -294,7 +294,9 @@ else
 fi
 
 mc version enable "local/${BUCKET_NAME}"
-mc cp /dev/null "local/${BUCKET_NAME}/datasets/.keep" 2>/dev/null || true
+mkdir -p /tmp/dsimaging-init
+: > /tmp/dsimaging-init/.keep
+mc cp /tmp/dsimaging-init/.keep "local/${BUCKET_NAME}/datasets/.keep" 2>/dev/null || true
 mc event add "local/${BUCKET_NAME}" arn:minio:sqs::DSIMAGING:webhook \
   --event put,delete \
   --prefix "datasets/" \