dscience-tools 2.3.2__tar.gz → 2.3.3__tar.gz

dscience_tools-2.3.3/LICENSE

@@ -0,0 +1,203 @@
+Copyright 2025
+Sergii Kavun
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{dscience_tools-2.3.2/dscience_tools.egg-info → dscience_tools-2.3.3}/PKG-INFO

@@ -1,12 +1,12 @@
 Metadata-Version: 2.4
 Name: dscience_tools
-Version: 2.3.2
+Version: 2.3.3
 Summary: DSTools: Data Science Tools Library
 Home-page: https://github.com/s-kav/ds_tools
 Author: Sergii Kavun
 Author-email: Sergii Kavun <kavserg@gmail.com>
 Maintainer-email: Sergii Kavun <kavserg@gmail.com>
-License: PolyForm-Noncommercial-1.0.0 OR Commercial
+License: Apache License 2.0
 Project-URL: Homepage, https://github.com/s-kav/ds_tools
 Project-URL: Documentation, https://s-kav.github.io/ds_tools/
 Project-URL: Repository, https://github.com/s-kav/ds_tools.git
@@ -20,14 +20,17 @@ Classifier: Operating System :: OS Independent
 Classifier: Programming Language :: Python
 Classifier: Programming Language :: Python :: 3
 Classifier: Programming Language :: Python :: 3 :: Only
-Classifier: Programming Language :: Python :: 3.6
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
 Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
 Classifier: Topic :: Scientific/Engineering :: Information Analysis
 Classifier: Topic :: Scientific/Engineering :: Mathematics
-Requires-Python: >=3.6.0
+Classifier: License :: OSI Approved :: Apache Software License
+Requires-Python: >=3.9.0
 Description-Content-Type: text/markdown
 License-File: LICENSE
-License-File: LICENSE-NC.txt
 Requires-Dist: pandas<=2.2.3,>=0.25.0
 Requires-Dist: numpy<=2.2.0,>=1.22.0
 Provides-Extra: test
@@ -47,7 +50,7 @@ Dynamic: license-file
 [![Tests](https://img.shields.io/github/actions/workflow/status/s-kav/ds_tools/python-publish.yml?label=Tests&color=darkgreen&style=flat)](https://github.com/s-kav/ds_tools/actions)
 [![PyPI version](https://img.shields.io/pypi/v/dscience-tools.svg)](https://pypi.org/project/dscience-tools/)
 [![codecov](https://codecov.io/gh/s-kav/ds_tools/branch/main/graph/badge.svg)](https://codecov.io/gh/s-kav/ds_tools)
-[![License: PolyForm Non-Commercial 1.0.0](https://img.shields.io/badge/License-PolyForm%20Non--Commercial-blue.svg)](https://polyformproject.org/licenses/noncommercial/1.0.0/)
+[![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)
 [![PyPI Downloads](https://static.pepy.tech/badge/dscience-tools)](https://pepy.tech/projects/dscience-tools)
 [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
 [![pre-commit](https://img.shields.io/badge/pre--commit-enabled-darkgreen?logo=pre-commit)](https://github.com/pre-commit/pre-commit)
@@ -73,17 +76,24 @@ Dynamic: license-file
 *   [License](#license)
 
 
-# Short intro
+# Short intro: DSTools — drop-in replacement for scattered scipy/sklearn utils
 
-**DSTools** is a Python library designed to assist data scientists and researchers by providing a collection of helpful functions for various stages of a data science project, from data exploration and preprocessing to model evaluation and synthetic data generation.
+**10x faster** distance calculations via Numba/GPU | **Unified API** for metrics + distances | Cohen's d, FFT, Mahalanobis in one import
 
-The library is built upon the author's extensive multi-decade experience (30+ years) in data science, statistical modeling, and enterprise software development. Drawing from real-world challenges encountered across diverse industries including finance, banking, healthcare, insurance, and e-commerce, this toolkit addresses common pain points that practitioners face daily in their analytical workflows.
-
-The development philosophy emphasizes practical utility over theoretical complexity, incorporating battle-tested patterns and methodologies that have proven effective in production environments. Each function and module reflects lessons learned from managing large-scale data projects, optimizing computational performance, and ensuring code maintainability in collaborative team settings.
+```bash
+pip install dscience-tools
 
-The library encapsulates best practices developed through years of consulting work, academic research collaborations, and hands-on problem-solving in high-stakes business environments. It represents a distillation of proven techniques, streamlined workflows, and robust error-handling approaches that have evolved through countless iterations and real-world applications.
+from ds_tools import DSTools
+tools = DSTools()
+tools.metrics.cohens_d(group_a, group_b)  # numpy/numba/cupy auto-dispatch
+```
 
-This comprehensive toolkit serves as a bridge between theoretical data science concepts and practical implementation needs, offering developers and researchers a reliable foundation built on decades of field-tested expertise and continuous refinement based on community feedback and emerging industry requirements. This library with helper functions to accelerate and simplify various stages of the data science research cycle.
+| Feature | scipy | sklearn | DSTools |
+| :--- | :---: | :---: | :---: |
+| GPU acceleration | ❌ | ❌ | ✅ |
+| Auto backend dispatch | ❌ | ❌ | ✅ |
+| Cohen's d | ❌ | ❌ | ✅ |
+| FFT + metrics in one API | ❌ | ❌ | ✅ |
 
 This toolkit is built on top of popular libraries like Pandas, Polars, Scikit-learn, Optuna, and Matplotlib, providing a higher-level API for common tasks in Exploratory Data Analysis (EDA), feature preprocessing, model evaluation, and synthetic data generation. It is designed for data scientists, analysts, and researchers who want to write cleaner, more efficient, and more reproducible code.
 
@@ -103,14 +113,9 @@ This toolkit is built on top of popular libraries like Pandas, Polars, Scikit-le
 -   **Advanced Statistics:** Calculate non-parametric correlation (`chatterjee_correlation`), entropy, and KL-divergence.
 -   **Utilities:** Save/load DataFrames to/from ZIP archives, generate random alphanumeric codes, and more.
 
-## What's New in Version 2.0.0
-
-This version marks a major architectural refactoring of the library, focusing on modularity, performance, and advanced ML features.
+## What's New in Version X.X.X
 
--   **✨ Modular Design:** The toolkit is now re-organized into logical namespaces. Instead of a single flat API, you now access functionality through `tools.metrics`, `tools.distance`, etc.
--   **🚀 High-Performance Backends:** Major functions in `metrics` and `distance` now automatically leverage **GPU acceleration (CuPy)** and **parallel CPU execution (Numba)** for significant speedups on large datasets.
--   **🤖 Gradient Calculation:** Key loss functions (like `mse`, `mae`, `huber_loss`) can now return their gradients (`return_grad=True`), making them suitable for custom training loops in ML frameworks.
--   **📈 Training Monitoring:** A new real-time monitoring system has been added to the `metrics` module to track and plot metrics during model training.
+See [CHANGELOG.md](/CHANGELOG.md).
 
 ## TODO & Future Plans
 
@@ -118,17 +123,17 @@ This library is actively maintained and will be expanded to cover more aspects o
 
 Here is the development roadmap:
 
--   [ ] **Expand Core Modules:**
-    -   [ ] Add more loss and another functions and metrics to `tools.metrics` (e.g. for classification, clusterization, etc.).
-    -   [ ] Implement more distance measures in `tools.distance` (e.g., Levenshtein for strings, Silhouette, etc.).
+-   [X] **Expand Core Modules:**
+    -   [X] Add more loss and another functions and metrics to `tools.metrics` (e.g. for classification, clusterization, etc.).
+    -   [X] Implement more distance measures in `tools.distance` (e.g., Levenshtein for strings, Silhouette, etc.).
 -   [ ] **New `Preprocessing` Module:**
     -   [ ] Develop high-performance feature scaling and encoding functions.
     -   [ ] Add utilities for handling time-series data.
 -   [ ] **New `Visualization` Module:**
     -   [ ] Create simple wrappers around Matplotlib/Seaborn for common plots (e.g., feature distribution, ROC curves).
--   [ ] **Community & Contributions:**
-    -   [ ] Improve documentation with more examples.
-    -   [ ] Create contribution guidelines (`CONTRIBUTING.md`).
+-   [X] **Community & Contributions:**
+    -   [X] Improve documentation with more examples.
+    -   [X] Create contribution guidelines ([CONTRIBUTING.md](/CONTRIBUTING.md)).
 
 Your feature requests and contributions are highly encouraged! Please open an issue to suggest a new function.
 
@@ -157,7 +162,7 @@ cd ds_tools
 
 ## Install Dependencies
 
-Ensure you have Python version 3.8 or higher and install the required packages:
+Ensure you have Python version 3.9+ or higher and install the required packages:
 
 ```bash
 pip install -r requirements.txt
@@ -166,14 +171,22 @@ pip install -r requirements.txt
 
 # Function Overview
 
-The library provides a wide range of functions. To see a full, formatted list of available tools, you can use the function_list method:
+The library provides a wide range of functions. To see a full, formatted list of available tools, metrics and distances, you can use the appropriate list methods:
 
 ```python
 
 from ds_tools import DSTools
+import pandas as pd
 
 tools = DSTools()
-tools.function_list()
+print('\n', '='*30, ' Functions ', '='*30, '\n')
+display(pd.DataFrame(tools.function_list()))
+
+print('\n', '='*30, ' Distances ', '='*30, '\n')
+display(tools.distance.list_distances().iloc[:, 0:2])
+
+print('\n', '='*30, ' Metrics ', '='*30, '\n')
+display(tools.metrics.list_metrics().iloc[:, 0:2])
 
 ```
 
@@ -189,7 +202,7 @@ Calculate Mean Absolute Error and its gradient. The best backend (GPU/Numba/NumP
 
 import numpy as np
 
-y_true = np.array()
+y_true = np.array([1.0, 2.0, 3.0, 4.0])
 y_pred = np.array([1.1, 2.2, 2.8, 4.3])
 
 # Calculate only the loss value
@@ -204,8 +217,8 @@ print(f"Gradient: {grad}")
 ## Using the Distance Module
 
 ```python
-u = np.array()
-v = np.array()
+u = np.random.rand(4)
+v = np.random.rand(4)
 
 euc_dist = tools.distance.euclidean(u, v)
 print(f"Euclidean Distance: {euc_dist:.4f}")
@@ -218,7 +231,7 @@ print(f"Euclidean Distance: {euc_dist:.4f}")
 tools.metrics.start_monitoring()
 
 # 2. Simulate training loop
-for epoch in range(10):
+for epoch in range(100):
     # Dummy loss values
     loss = 1 / (epoch + 1)
     val_loss = 1.2 / (epoch + 1) + np.random.rand() * 0.1
@@ -247,7 +260,7 @@ tools = DSTools()
 
 # 2. Generate some dummy data
 y_true = np.array([0, 1, 1, 0, 1, 0, 0, 1])
-y_probs = np.array([0.1, 0.8, 0.6, 0.3, 0.9, 0.2, 0.4, 0.7])
+y_probs = np.array([0.1, 0.8, 0.6, 0.7, 0.4, 0.2, 0.4, 0.7])
 
 # 3. Get a comprehensive evaluation report
 # This will print metrics and show plots for ROC and Precision-Recall curves.
@@ -258,6 +271,30 @@ print(f"\nROC AUC Score: {results['roc_auc']:.4f}")
 
 ```
 
+## Calculate Cohen's distance and fast compute FFT.
+
+```python
+
+import numpy as np
+from ds_tools import DSTools
+
+tools = DSTools()
+
+# 1. Calculate Cohen's distance
+group_a = np.random.normal(10, 2, 5000)
+group_b = np.random.normal(12, 2, 5000)
+effect_size = tools.metrics.cohens_d(group_a, group_b)
+print(f"Effect Size: {effect_size}")
+
+# 2. Compute FFT using Numba engine
+signal = np.random.random(1000)
+
+# Automatically pads to 1024, or to 128 at 100 as input
+spectrum = tools.metrics.fft(signal, engine='numba')
+print(f"Spectrum shape: {len(spectrum)}")
+
+```
+
 This will produce:
 - A detailed printout of key metrics (Accuracy, ROC AUC, Average Precision, etc.).
 - A full classification report.
@@ -315,12 +352,18 @@ print(f"Generated Std: {np.std(generated_data):.2f}")
 Visualize the relationships in your data with a highly customizable correlation matrix.
 
 ```python
-# --- Sample Data ---
+import numpy as np
+import pandas as pd
+from ds_tools import DSTools, CorrelationConfig
+
+tools = DSTools()
+
 data = {
     'feature_a': np.random.rand(100) * 100,
     'feature_b': np.random.rand(100) * 50 + 25,
     'feature_c': np.random.rand(100) * -80,
 }
+
 df = pd.DataFrame(data)
 df['feature_d'] = df['feature_a'] * 1.5 + np.random.normal(0, 10, 100)
 
@@ -343,7 +386,11 @@ This will display a publication-quality heatmap, masked to show only the lower t
 Quickly understand the distribution of your categorical features.
 
 ```python
-# --- Sample Data ---
+import pandas as pd
+from ds_tools import DSTools, CorrelationConfig
+
+tools = DSTools()
+
 data = {
     'city': ['London', 'Paris', 'London', 'New York', 'Paris', 'London'],
     'status': ['Active', 'Inactive', 'Active', 'Active', 'Inactive', 'Active']
@@ -368,14 +415,21 @@ Helps to plot confusion matrix in graphical kind, especially for calssification
 
 
 ```python
+import numpy as np
+from ds_tools import DSTools, CorrelationConfig
+
+tools = DSTools()
+
 np.random.seed(42)
 N_SAMPLES = 1500
+N_CLASSES = 3
 
-y_true_multi = np.random.randint(0, 3, size=N_SAMPLES)
+random_errors = np.random.randint(1, N_CLASSES, size=N_SAMPLES)
+y_true_multi = np.random.randint(0, N_CLASSES, size=N_SAMPLES)
 correct_preds = np.random.rand(N_SAMPLES) < 0.75
-y_pred_multi = np.where(correct_preds, y_true_multi, (y_true_multi + random_errors) % 3)
+y_pred_multi = np.where(correct_preds, y_true_multi, (y_true_multi + random_errors) % N_CLASSES)
 
-plot_confusion_matrix(
+tools.plot_confusion_matrix(
 y_true_multi,
 y_pred_multi,
 class_labels=['Cat', 'Dog', 'Bird'],
@@ -438,7 +492,7 @@ A high-performance toolkit for calculating distances and similarities.
 
 # Contributing
 
-See [CONTRIBUTING](/CONTRIBUTING.md)
+See [CONTRIBUTING](/CONTRIBUTING.md) and [CONTRIBUTOR_LICENSE_AGREEMENT](/CONTRIBUTOR_LICENSE_AGREEMENT.md).
 
 # TODO
 1. Add some important kind of plots:
@@ -461,24 +515,29 @@ See [CONTRIBUTING](/CONTRIBUTING.md)
 
 📌 Elbow Curve – Helps choose the right number of clusters in K-Means.
 
-2. Implement Fast Fourier Transform (FFT) algorithm and Shannon’s interpolation formula: done, 2.3.0.
+2. Implement Fast Fourier Transform (FFT) algorithm and Shannon’s interpolation formula: done, version 2.3.2.
 
-3. Add some fast distance metrics (expand of existed): done, 2.3.0.
+3. Add some fast distance metrics (expand of existed): done, version 2.3.2.
 
 
 # References
 
 For citing you should use:
 
-Sergii Kavun. (2025). s-kav/ds_tools: Version 2.0.0 (v.2.0.0). Zenodo. https://doi.org/10.5281/zenodo.17080822
+Sergii Kavun. (2025). s-kav/ds_tools: Version 2.3.2 (v.2.3.2). Zenodo. https://doi.org/10.5281/zenodo.17080822
 
 [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.17080822.svg)](https://doi.org/10.5281/zenodo.17080822)
 
 
 # License
-This project uses **dual licensing**:
 
-- 🎓 **Free for Academic & Research**: PolyForm Noncommercial 1.0.0
-- 💼 **Commercial License Available**: Contact us for business use [License](https://github.com/s-kav/ds_tools/blob/main/CLA.md)
+This project is licensed under the **Apache License 2.0**.
+
+You are free to use, modify, and distribute this software in both commercial
+and non-commercial projects.
+
+[![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)
+
+✨ Thanks for visiting DSTools: Data Science Research Toolkit!
 
-[📋 Full License Details](https://github.com/s-kav/ds_tools/blob/main/LICENSE) | [💰 Get Commercial License](mailto:kavserg@gmail.com)
+![visitors](https://visitor-badge.laobi.icu/badge?page_id=s-kav.ds_tools)