dsa-helpers 1.1.5.dev1__tar.gz → 1.1.5.dev2__tar.gz

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Files changed (52) hide show
  1. {dsa_helpers-1.1.5.dev1/dsa_helpers.egg-info → dsa_helpers-1.1.5.dev2}/PKG-INFO +1 -1
  2. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/__init__.py +1 -1
  3. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/ml/datasets/utils.py +4 -2
  4. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2/dsa_helpers.egg-info}/PKG-INFO +1 -1
  5. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/pyproject.toml +1 -1
  6. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/.gitignore +0 -0
  7. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/.readthedocs.yaml +0 -0
  8. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/LICENSE +0 -0
  9. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/README.md +0 -0
  10. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/app.py +0 -0
  11. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dev.py +0 -0
  12. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/docs/requirements.txt +0 -0
  13. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/docs/source/conf.py +0 -0
  14. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/docs/source/index.rst +0 -0
  15. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/cli_utils.py +0 -0
  16. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/dash/__init__.py +0 -0
  17. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/dash/dash_paperdragon_utils.py +0 -0
  18. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/dash/header.py +0 -0
  19. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/dash/header_callbacks.py +0 -0
  20. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/girder_utils.py +0 -0
  21. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/gpd_utils.py +0 -0
  22. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/image_utils.py +0 -0
  23. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/imread.py +0 -0
  24. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/imwrite.py +0 -0
  25. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/ml/__init__.py +0 -0
  26. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/ml/callbacks.py +0 -0
  27. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/ml/datasets/SegFormerSegmentationDataset.py +0 -0
  28. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/ml/datasets/__init__.py +0 -0
  29. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/ml/evaluate.py +0 -0
  30. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/ml/metrics.py +0 -0
  31. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/ml/object_detection/__init__.py +0 -0
  32. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/ml/object_detection/get_pearce_roi_images.py +0 -0
  33. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/ml/object_detection/tile_image.py +0 -0
  34. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/ml/object_detection/utils.py +0 -0
  35. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/ml/segformer_semantic_segmentation/__init__.py +0 -0
  36. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/ml/segformer_semantic_segmentation/inference.py +0 -0
  37. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/ml/segformer_semantic_segmentation/train.py +0 -0
  38. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/ml/transforms/__init__.py +0 -0
  39. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/ml/transforms/segformer_transforms.py +0 -0
  40. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/mongo_utils.py +0 -0
  41. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/tile_utils.py +0 -0
  42. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/tiling.py +0 -0
  43. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/utils.py +0 -0
  44. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers.egg-info/SOURCES.txt +0 -0
  45. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers.egg-info/dependency_links.txt +0 -0
  46. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers.egg-info/requires.txt +0 -0
  47. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers.egg-info/top_level.txt +0 -0
  48. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/setup.cfg +0 -0
  49. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/tests/app/Dockerfile +0 -0
  50. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/tests/app/app.py +0 -0
  51. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/tests/docker-compose.yaml +0 -0
  52. {dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/tests/test.ipynb +0 -0
{dsa_helpers-1.1.5.dev1/dsa_helpers.egg-info → dsa_helpers-1.1.5.dev2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: dsa_helpers
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- Version: 1.1.5.dev1
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+ Version: 1.1.5.dev2
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  Summary: Utility functions for working with the DSA girder client.
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  Author-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
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  Maintainer-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
{dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/__init__.py RENAMED
@@ -3,7 +3,7 @@ from .imread import imread
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  from .imwrite import imwrite
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  # Version of the dsa-helpers package
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- __version__ = "1.1.5.dev1"
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+ __version__ = "1.1.5.dev2"
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  # To avoid slow downs, do not allow from dsa_helpers import * to import anything.
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  __all__ = []
{dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/dsa_helpers/ml/datasets/utils.py RENAMED
@@ -29,11 +29,13 @@ def create_segformer_segmentation_dataset(
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  if isinstance(df, str):
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  df = pd.read_csv(df, low_memory=low_memory)
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- dataset = SegFormerSegmentationDataset(df)
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+ dataset = SegFormerSegmentationDataset(df.copy())
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  dataset = Dataset.from_generator(
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  generator=lambda: dataset_generator(dataset),
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- features=Features({"pixel_values": Image(), "label": Image()}), # Example shape
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+ features=Features(
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+ {"pixel_values": Image(), "label": Image()}
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+ ), # Example shape
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  )
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  if transforms is not None:
{dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2/dsa_helpers.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: dsa_helpers
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- Version: 1.1.5.dev1
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+ Version: 1.1.5.dev2
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  Summary: Utility functions for working with the DSA girder client.
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  Author-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
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  Maintainer-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
{dsa_helpers-1.1.5.dev1 → dsa_helpers-1.1.5.dev2}/pyproject.toml RENAMED
@@ -37,7 +37,7 @@ classifiers = [
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  "License :: OSI Approved :: MIT License",
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  ]
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  keywords = ["dsa", "girder", "girder_client"]
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- version = "v1.1.5.dev1"
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+ version = "v1.1.5.dev2"
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  [project.urls]
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  Repository = "https://github.com/Gutman-Lab/dsa-python-utils"