dsa-helpers 1.1.19.dev1__tar.gz → 1.1.19.dev2__tar.gz

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  1. {dsa_helpers-1.1.19.dev1/dsa_helpers.egg-info → dsa_helpers-1.1.19.dev2}/PKG-INFO +1 -1
  2. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/__init__.py +1 -1
  3. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/segformer_semantic_segmentation/train.py +8 -0
  4. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2/dsa_helpers.egg-info}/PKG-INFO +1 -1
  5. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/pyproject.toml +1 -1
  6. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/.gitignore +0 -0
  7. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/.readthedocs.yaml +0 -0
  8. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/LICENSE +0 -0
  9. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/README.md +0 -0
  10. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/app.py +0 -0
  11. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dev.py +0 -0
  12. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/docker/Dockerfile +0 -0
  13. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/docker/README.md +0 -0
  14. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/docs/requirements.txt +0 -0
  15. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/docs/source/conf.py +0 -0
  16. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/docs/source/index.rst +0 -0
  17. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/cli_utils.py +0 -0
  18. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/dash/__init__.py +0 -0
  19. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/dash/dash_paperdragon_utils.py +0 -0
  20. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/dash/header.py +0 -0
  21. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/dash/header_callbacks.py +0 -0
  22. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/girder_utils.py +0 -0
  23. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/gpd_utils.py +0 -0
  24. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/image_utils.py +0 -0
  25. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/imread.py +0 -0
  26. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/imwrite.py +0 -0
  27. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/__init__.py +0 -0
  28. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/callbacks.py +0 -0
  29. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/datasets/SegFormerSegmentationDataset.py +0 -0
  30. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/datasets/__init__.py +0 -0
  31. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/datasets/utils.py +0 -0
  32. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/evaluate.py +0 -0
  33. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/metrics.py +0 -0
  34. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/object_detection/__init__.py +0 -0
  35. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/object_detection/get_pearce_roi_images.py +0 -0
  36. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/object_detection/tile_image.py +0 -0
  37. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/object_detection/utils.py +0 -0
  38. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/segformer_semantic_segmentation/__init__.py +0 -0
  39. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/segformer_semantic_segmentation/datasets.py +0 -0
  40. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/segformer_semantic_segmentation/evaluate.py +0 -0
  41. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/segformer_semantic_segmentation/inference.py +0 -0
  42. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/segformer_semantic_segmentation/transforms.py +0 -0
  43. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/segformer_semantic_segmentation/utils.py +0 -0
  44. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/transforms/__init__.py +0 -0
  45. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/transforms/segformer_transforms.py +0 -0
  46. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/mongo_utils.py +0 -0
  47. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/tile_utils.py +0 -0
  48. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/tiling.py +0 -0
  49. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/utils.py +0 -0
  50. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers.egg-info/SOURCES.txt +0 -0
  51. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers.egg-info/dependency_links.txt +0 -0
  52. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers.egg-info/requires.txt +0 -0
  53. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers.egg-info/top_level.txt +0 -0
  54. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/requirements.txt +0 -0
  55. {dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/setup.cfg +0 -0
{dsa_helpers-1.1.19.dev1/dsa_helpers.egg-info → dsa_helpers-1.1.19.dev2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: dsa_helpers
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- Version: 1.1.19.dev1
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+ Version: 1.1.19.dev2
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  Summary: Utility functions for working with the DSA girder client.
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  Author-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
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  Maintainer-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
{dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/__init__.py RENAMED
@@ -3,7 +3,7 @@ from .imread import imread
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  from .imwrite import imwrite
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  # Version of the dsa-helpers package
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- __version__ = "1.1.19dev1"
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+ __version__ = "1.1.19dev2"
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  # To avoid slow downs, do not allow from dsa_helpers import * to import anything.
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  __all__ = []
{dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/dsa_helpers/ml/segformer_semantic_segmentation/train.py RENAMED
@@ -6,6 +6,7 @@ from transformers import (
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  )
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  import numpy as np
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  from pathlib import Path
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+ import tempfile, shutil
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  import torch
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  from torch import nn
@@ -144,6 +145,10 @@ def train(
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  ignore_mismatched_sizes=True,
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  ).to(device)
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+ if rank != 0:
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+ # Create temp directory for the model.
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+ save_dir = tempfile.mkdtemp()
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+
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  # Training arguments.
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  training_args = TrainingArguments(
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  str(save_dir),
@@ -258,6 +263,9 @@ def train(
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  if rank != 0:
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  # Train the model.
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  _ = trainer.train()
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+
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+ # Delete the temp directory.
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+ shutil.rmtree(save_dir)
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  return None
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  else:
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  print("Starting training...")
{dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2/dsa_helpers.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: dsa_helpers
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- Version: 1.1.19.dev1
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+ Version: 1.1.19.dev2
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  Summary: Utility functions for working with the DSA girder client.
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  Author-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
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  Maintainer-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
{dsa_helpers-1.1.19.dev1 → dsa_helpers-1.1.19.dev2}/pyproject.toml RENAMED
@@ -41,7 +41,7 @@ classifiers = [
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  "License :: OSI Approved :: MIT License",
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  ]
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  keywords = ["dsa", "girder", "girder_client"]
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- version = "v1.1.19dev1"
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+ version = "v1.1.19dev2"
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  [project.optional-dependencies]
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  opencv = ["opencv-python"]