dsa-helpers 1.0.5.dev0__tar.gz → 1.0.6.dev0__tar.gz

{dsa_helpers-1.0.5.dev0/dsa_helpers.egg-info → dsa_helpers-1.0.6.dev0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: dsa_helpers
-Version: 1.0.5.dev0
+Version: 1.0.6.dev0
 Summary: Utility functions for working with the DSA girder client.
 Author-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
 Maintainer-email: "Juan C. Vizcarra" <jvizcar@emory.edu>

dsa_helpers-1.0.6.dev0/dsa_helpers/utils.py

@@ -0,0 +1,66 @@
+"""Utility functions for DSA Helpers.
+
+This module provides various miscellaneous utility functions that are
+not grouped into their own modules.
+"""
+
+from shapely.geometry import Polygon
+import numpy as np
+
+
+def remove_small_holes(
+    polygon: Polygon, hole_area_threshold: float
+) -> Polygon:
+    """Remove small holes from a shapely polygon.
+
+    Args:
+        polygon (shapely.geometry.Polygon): Polygon to remove holes
+            from.
+        hole_area_threshold (float): Minimum area of a hole to keep it.
+
+    Returns:
+        shapely.geometry.Polygon: Polygon with small holes removed.
+
+    """
+    if not polygon.interiors:  # if there are no holes, return as is
+        return polygon
+
+    # Filter out small holes
+    new_holes = [
+        hole
+        for hole in polygon.interiors
+        if Polygon(hole).area > hole_area_threshold
+    ]
+
+    # Create a new polygon with only large holes
+    return Polygon(polygon.exterior, new_holes)
+
+
+def convert_to_json_serializable(
+    data: int | float | str | list | dict,
+) -> int | float | str | list | dict:
+    """Convert a list, integer, float, or dictionary into a JSON
+    serializable version of the object. Uses recursion to make sure the
+    entire input data structure is converted to a JSON serializable
+    version.
+
+    Args:
+        data: Object to convert to JSON serializable.
+
+    Returns:
+        JSON serializable version of the object.
+    """
+    if isinstance(data, np.ndarray):
+        return data.tolist()
+    elif isinstance(data, np.integer):
+        return int(data)
+    elif isinstance(data, np.floating):
+        return float(data)
+    elif isinstance(data, dict):
+        return {
+            key: convert_to_json_serializable(value)
+            for key, value in data.items()
+        }
+    elif isinstance(data, list):
+        return [convert_to_json_serializable(item) for item in data]
+    return data

{dsa_helpers-1.0.5.dev0 → dsa_helpers-1.0.6.dev0/dsa_helpers.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: dsa_helpers
-Version: 1.0.5.dev0
+Version: 1.0.6.dev0
 Summary: Utility functions for working with the DSA girder client.
 Author-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
 Maintainer-email: "Juan C. Vizcarra" <jvizcar@emory.edu>

{dsa_helpers-1.0.5.dev0 → dsa_helpers-1.0.6.dev0}/pyproject.toml

@@ -35,7 +35,7 @@ classifiers = [
     "License :: OSI Approved :: MIT License",
 ]
 keywords = ["dsa", "girder", "girder_client"]
-version = "v1.0.5.dev0"
+version = "v1.0.6.dev0"
 
 [project.urls]
 Repository = "https://github.com/Gutman-Lab/dsa-python-utils"

dsa_helpers-1.0.5.dev0/dsa_helpers/utils.py

@@ -1,35 +0,0 @@
-"""Utility functions for DSA Helpers.
-
-This module provides various miscellaneous utility functions that are
-not grouped into their own modules.
-"""
-
-from shapely.geometry import Polygon
-
-
-def remove_small_holes(
-    polygon: Polygon, hole_area_threshold: float
-) -> Polygon:
-    """Remove small holes from a shapely polygon.
-
-    Args:
-        polygon (shapely.geometry.Polygon): Polygon to remove holes
-            from.
-        hole_area_threshold (float): Minimum area of a hole to keep it.
-
-    Returns:
-        shapely.geometry.Polygon: Polygon with small holes removed.
-
-    """
-    if not polygon.interiors:  # if there are no holes, return as is
-        return polygon
-
-    # Filter out small holes
-    new_holes = [
-        hole
-        for hole in polygon.interiors
-        if Polygon(hole).area > hole_area_threshold
-    ]
-
-    # Create a new polygon with only large holes
-    return Polygon(polygon.exterior, new_holes)