dsa-helpers 1.0.2.dev1__tar.gz → 1.0.3.dev0__tar.gz

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Files changed (51) hide show
  1. {dsa_helpers-1.0.2.dev1/dsa_helpers.egg-info → dsa_helpers-1.0.3.dev0}/PKG-INFO +2 -2
  2. dsa_helpers-1.0.3.dev0/dsa_helpers/__init__.py +6 -0
  3. dsa_helpers-1.0.3.dev0/dsa_helpers/dash/__init__.py +3 -0
  4. dsa_helpers-1.0.3.dev0/dsa_helpers/ml/__init__.py +2 -0
  5. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/ml/datasets/__init__.py +2 -1
  6. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/ml/object_detection/__init__.py +1 -1
  7. dsa_helpers-1.0.3.dev0/dsa_helpers/ml/transforms/__init__.py +1 -0
  8. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0/dsa_helpers.egg-info}/PKG-INFO +2 -2
  9. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/pyproject.toml +1 -1
  10. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/tests/test.ipynb +10 -22
  11. dsa_helpers-1.0.2.dev1/dsa_helpers/__init__.py +0 -23
  12. dsa_helpers-1.0.2.dev1/dsa_helpers/dash/__init__.py +0 -3
  13. dsa_helpers-1.0.2.dev1/dsa_helpers/ml/__init__.py +0 -20
  14. dsa_helpers-1.0.2.dev1/dsa_helpers/ml/transforms/__init__.py +0 -1
  15. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/.gitignore +0 -0
  16. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/.readthedocs.yaml +0 -0
  17. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/LICENSE +0 -0
  18. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/README.md +0 -0
  19. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/app.py +0 -0
  20. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/docs/requirements.txt +0 -0
  21. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/docs/source/conf.py +0 -0
  22. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/docs/source/index.rst +0 -0
  23. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/dash/dash_paperdragon_utils.py +0 -0
  24. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/dash/header.py +0 -0
  25. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/dash/header_callbacks.py +0 -0
  26. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/girder_utils.py +0 -0
  27. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/imread.py +0 -0
  28. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/imwrite.py +0 -0
  29. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/ml/callbacks.py +0 -0
  30. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/ml/datasets/SegFormerSegmentationDataset.py +0 -0
  31. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/ml/datasets/utils.py +0 -0
  32. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/ml/evaluate.py +0 -0
  33. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/ml/metrics.py +0 -0
  34. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/ml/object_detection/get_pearce_roi_images.py +0 -0
  35. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/ml/object_detection/tile_image.py +0 -0
  36. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/ml/object_detection/utils.py +0 -0
  37. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/ml/segformer_semantic_segmentation/__init__.py +0 -0
  38. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/ml/segformer_semantic_segmentation/inference.py +0 -0
  39. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/ml/transforms/segformer_transforms.py +0 -0
  40. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/mongo_utils.py +0 -0
  41. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/tile_utils.py +0 -0
  42. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/tiling.py +0 -0
  43. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers/utils.py +0 -0
  44. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers.egg-info/SOURCES.txt +0 -0
  45. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers.egg-info/dependency_links.txt +0 -0
  46. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers.egg-info/requires.txt +0 -0
  47. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/dsa_helpers.egg-info/top_level.txt +0 -0
  48. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/setup.cfg +0 -0
  49. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/tests/app/Dockerfile +0 -0
  50. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/tests/app/app.py +0 -0
  51. {dsa_helpers-1.0.2.dev1 → dsa_helpers-1.0.3.dev0}/tests/docker-compose.yaml +0 -0
@@ -1,6 +1,6 @@
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- Metadata-Version: 2.1
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+ Metadata-Version: 2.2
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  Name: dsa_helpers
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- Version: 1.0.2.dev1
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+ Version: 1.0.3.dev0
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  Summary: Utility functions for working with the DSA girder client.
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  Author-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
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  Maintainer-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
@@ -0,0 +1,6 @@
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+ # Shadow imports.
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+ from .imread import imread
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+ from .imwrite import imwrite
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+
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+ # To avoid slow downs, do not allow from dsa_helpers import * to import anything.
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+ __all__ = []
@@ -0,0 +1,3 @@
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+ from . import header
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+
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+ __all__ = []
@@ -0,0 +1,2 @@
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+ # Modules that are imported from * notation.
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+ __all__ = []
@@ -1,3 +1,4 @@
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+ # Shadow import.
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  from .SegFormerSegmentationDataset import SegFormerSegmentationDataset
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- __all__ = ["utils"]
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+ __all__ = []
@@ -2,4 +2,4 @@
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  from .get_pearce_roi_images import get_pearce_roi_images
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  from .tile_image import tile_image
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- __all__ = ["utils"]
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+ __all__ = []
@@ -0,0 +1 @@
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+ __all__ = []
@@ -1,6 +1,6 @@
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- Metadata-Version: 2.1
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+ Metadata-Version: 2.2
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  Name: dsa_helpers
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- Version: 1.0.2.dev1
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+ Version: 1.0.3.dev0
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  Summary: Utility functions for working with the DSA girder client.
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  Author-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
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  Maintainer-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
@@ -35,7 +35,7 @@ classifiers = [
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  "License :: OSI Approved :: MIT License",
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  ]
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  keywords = ["dsa", "girder", "girder_client"]
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- version = "v1.0.2dev1"
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+ version = "v1.0.3.dev0"
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  [project.urls]
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  Repository = "https://github.com/Gutman-Lab/dsa-python-utils"
@@ -8,6 +8,15 @@
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  "Test different functions of the library."
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  ]
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  },
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+ {
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+ "cell_type": "code",
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+ "execution_count": 1,
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+ "metadata": {},
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+ "outputs": [],
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+ "source": [
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+ "import dsa_helpers.dash"
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+ ]
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+ },
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  {
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  "cell_type": "markdown",
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  "metadata": {},
@@ -92,28 +101,7 @@
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  "cell_type": "code",
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  "execution_count": null,
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  "metadata": {},
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- "outputs": [
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- {
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- "name": "stdout",
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- "output_type": "stream",
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- "text": [
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- "Help on function imwrite in module dsa_helpers.imwrite:\n",
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- "\n",
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- "imwrite(fp: str, img: numpy.ndarray, grayscale: bool = False) -> None\n",
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- " Save an image to disk.\n",
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- "\n",
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- " Args:\n",
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- " img (np.ndarray): The image to save.\n",
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- " fp (str): The file path to save the image.\n",
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- " grayscale (bool, optional): Whether to save the image as grayscale.\n",
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- " Defaults to False.\n",
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- "\n",
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- " Raises:\n",
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- " ValueError: The image must be grayscale, RGB, or RGBA.\n",
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- "\n"
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- ]
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- }
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- ],
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+ "outputs": [],
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  "source": []
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  }
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  ],
@@ -1,23 +0,0 @@
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- # Shadow imports.
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- from .imread import imread
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- from .imwrite import imwrite
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-
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- # Make modules available.
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- from . import girder_utils
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- from . import dash
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- from . import ml
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- from . import mongo_utils
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- from . import tiling
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- from . import utils
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- from . import tile_utils
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-
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- # Modules that should be available.
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- __all__ = [
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- "girder_utils",
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- "dash",
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- "ml",
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- "mongo_utils",
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- "tiling",
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- "utils",
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- "tile_utils",
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- ]
@@ -1,3 +0,0 @@
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- from . import header
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-
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- __all__ = ["dash_paperdragon_utils", "header_callbacks", "header"]
@@ -1,20 +0,0 @@
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- # Allow modules to be imported.
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- from . import (
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- object_detection,
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- datasets,
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- transforms,
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- segformer_semantic_segmentation,
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- callbacks,
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- evaluate,
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- )
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-
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- # Modules that are imported from * notation.
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- __all__ = [
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- "object_detection",
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- "datasets",
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- "metrics",
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- "transforms",
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- "segformer_semantic_segmentation",
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- "callbacks",
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- "evaluate",
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- ]
@@ -1 +0,0 @@
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- __all__ = ["segformer_transforms"]