dsa-helpers 0.8__tar.gz → 0.8.dev1__tar.gz

{dsa_helpers-0.8/dsa_helpers.egg-info → dsa_helpers-0.8.dev1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dsa_helpers
-Version: 0.8
+Version: 0.8.dev1
 Summary: Utility functions for working with the DSA girder client.
 Author-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
 Maintainer-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
@@ -37,9 +37,6 @@ This library was tested using Python version 3.11.8 and uses the dependencies de
 
 This Python PyPI package is found [here](https://pypi.org/project/dsa-helpers/).
 
-## Extra dependencies
-If you are getting a large image error, then install large image using the instructions provided in their [GitHub page](https://github.com/girder/large_image#:~:text=pip%20install%20large%2Dimage%5Ball%5D%20%2D%2Dfind%2Dlinks%20https%3A//girder.github.io/large_image_wheels).
-
 ## Instructions for Development
 1. Install requirements for building and distributing package:
 ```

{dsa_helpers-0.8 → dsa_helpers-0.8.dev1}/README.md

@@ -7,9 +7,6 @@ This library was tested using Python version 3.11.8 and uses the dependencies de
 
 This Python PyPI package is found [here](https://pypi.org/project/dsa-helpers/).
 
-## Extra dependencies
-If you are getting a large image error, then install large image using the instructions provided in their [GitHub page](https://github.com/girder/large_image#:~:text=pip%20install%20large%2Dimage%5Ball%5D%20%2D%2Dfind%2Dlinks%20https%3A//girder.github.io/large_image_wheels).
-
 ## Instructions for Development
 1. Install requirements for building and distributing package:
 ```

{dsa_helpers-0.8 → dsa_helpers-0.8.dev1}/dsa_helpers/ml/tiling/semantic_seg_tile_wsi_with_dsa_annotations.py

@@ -82,7 +82,7 @@ def _process_tile(
     imwrite(img_fp, tile_img)
     imwrite(mask_dir / fn, tile_mask, grayscale=True)
 
-    return str(img_fp), x, y
+    return str(img_fp)
 
 
 def semantic_seg_tile_wsi_with_dsa_annotations(
@@ -112,8 +112,7 @@ def semantic_seg_tile_wsi_with_dsa_annotations(
         nproc (int, optional): number of processes to use for tiling.
 
     Returns:
-        list[str]: A list of tuples: (tile file path, x, y coordinates
-            of tile).
+        list[str]: list of file paths to the created tile images.
 
     """
     # Format annotation documents for drawing on tile masks.
@@ -217,9 +216,9 @@ def semantic_seg_tile_wsi_with_dsa_annotations(
             for xy in xys
         ]
 
-        tile_info = []
+        fps = []
 
         for job in tqdm(jobs, desc="Tiling..."):
-            tile_info.append(job.get())
+            fps.append(job.get())
 
-        return tile_info
+        return fps

{dsa_helpers-0.8 → dsa_helpers-0.8.dev1/dsa_helpers.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dsa_helpers
-Version: 0.8
+Version: 0.8.dev1
 Summary: Utility functions for working with the DSA girder client.
 Author-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
 Maintainer-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
@@ -37,9 +37,6 @@ This library was tested using Python version 3.11.8 and uses the dependencies de
 
 This Python PyPI package is found [here](https://pypi.org/project/dsa-helpers/).
 
-## Extra dependencies
-If you are getting a large image error, then install large image using the instructions provided in their [GitHub page](https://github.com/girder/large_image#:~:text=pip%20install%20large%2Dimage%5Ball%5D%20%2D%2Dfind%2Dlinks%20https%3A//girder.github.io/large_image_wheels).
-
 ## Instructions for Development
 1. Install requirements for building and distributing package:
 ```

{dsa_helpers-0.8 → dsa_helpers-0.8.dev1}/pyproject.toml

@@ -36,7 +36,7 @@ classifiers = [
     "License :: OSI Approved :: MIT License",
 ]
 keywords = ["dsa", "girder", "girder_client"]
-version = "v0.8"
+version = "v0.8dev1"
 
 [project.urls]
 Repository = "https://github.com/Gutman-Lab/dsa-python-utils"