dsa-helpers 0.5__tar.gz → 0.5.dev0__tar.gz

{dsa_helpers-0.5/dsa_helpers.egg-info → dsa_helpers-0.5.dev0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dsa_helpers
-Version: 0.5
+Version: 0.5.dev0
 Summary: Utility functions for working with the DSA girder client.
 Author-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
 Maintainer-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
@@ -8,7 +8,7 @@ Project-URL: Repository, https://github.com/Gutman-Lab/dsa-python-utils
 Keywords: dsa,girder,girder_client
 Classifier: Programming Language :: Python :: 3
 Classifier: License :: OSI Approved :: MIT License
-Requires-Python: >=3.8
+Requires-Python: >=3.9
 Description-Content-Type: text/markdown
 License-File: LICENSE
 Requires-Dist: girder-client
@@ -22,9 +22,9 @@ Requires-Dist: dash
 Requires-Dist: dash_bootstrap_components
 Requires-Dist: shapely
 Requires-Dist: geopandas
-Requires-Dist: transformers[torch]
 Requires-Dist: torch
 Requires-Dist: datasets
+Requires-Dist: transformers
 Requires-Dist: torchvision
 
 # Digital Slide Archive (DSA) Helpers

{dsa_helpers-0.5 → dsa_helpers-0.5.dev0}/dsa_helpers/image_utils.py

@@ -14,7 +14,6 @@ def tile_image(
     fill: int | tuple = (255, 255, 255),
     prepend_name: str = "",
     overwrite: bool = False,
-    grayscale: bool = False,
 ) -> pd.DataFrame:
     """Tile an image into smaller images.
 
@@ -29,8 +28,6 @@ def tile_image(
         prepend_name (str, optional): A string to prepend to the tile names.
         overwrite (bool, optional): Whether to overwrite existing images.
             Defaults to False.
-        grayscale (bool, optional): Whether to save images as grayscale instead
-            of the default RGB. Defaults to False.
 
     Returns:
         pandas.DataFrame: A DataFrame with the tile locations.
@@ -53,21 +50,18 @@ def tile_image(
 
     xys = [(x, y) for x in range(0, w, stride) for y in range(0, h, stride)]
 
-    if prepend_name:
-        prepend_name += "_"
-
     for xy in xys:
         # Get the top left and bottom right coordinates of the tile.
         x, y = xy
 
         # Filepath for saving tile.
-        save_fp = save_loc / f"{prepend_name}x{x}y{y}tilesize{tile_size}.png"
+        save_fp = save_loc / f"{prepend_name}_x{x}y{y}tilesize{tile_size}.png"
 
         if not save_fp.is_file() or overwrite:
             # Get the tile from the image.
             tile_img = img[y : y + tile_size, x : x + tile_size]
 
-            imwrite(save_fp, tile_img, grayscale=grayscale)
+            imwrite(save_fp, tile_img)
 
         df_data.append([save_fp, x, y, tile_size])
 

{dsa_helpers-0.5 → dsa_helpers-0.5.dev0/dsa_helpers.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dsa_helpers
-Version: 0.5
+Version: 0.5.dev0
 Summary: Utility functions for working with the DSA girder client.
 Author-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
 Maintainer-email: "Juan C. Vizcarra" <jvizcar@emory.edu>
@@ -8,7 +8,7 @@ Project-URL: Repository, https://github.com/Gutman-Lab/dsa-python-utils
 Keywords: dsa,girder,girder_client
 Classifier: Programming Language :: Python :: 3
 Classifier: License :: OSI Approved :: MIT License
-Requires-Python: >=3.8
+Requires-Python: >=3.9
 Description-Content-Type: text/markdown
 License-File: LICENSE
 Requires-Dist: girder-client
@@ -22,9 +22,9 @@ Requires-Dist: dash
 Requires-Dist: dash_bootstrap_components
 Requires-Dist: shapely
 Requires-Dist: geopandas
-Requires-Dist: transformers[torch]
 Requires-Dist: torch
 Requires-Dist: datasets
+Requires-Dist: transformers
 Requires-Dist: torchvision
 
 # Digital Slide Archive (DSA) Helpers

{dsa_helpers-0.5 → dsa_helpers-0.5.dev0}/dsa_helpers.egg-info/requires.txt

@@ -9,7 +9,7 @@ dash
 dash_bootstrap_components
 shapely
 geopandas
-transformers[torch]
 torch
 datasets
+transformers
 torchvision

{dsa_helpers-0.5 → dsa_helpers-0.5.dev0}/pyproject.toml

@@ -15,9 +15,9 @@ dependencies = [
     'dash_bootstrap_components',
     'shapely',
     'geopandas',
-    "transformers[torch]",
     "torch",
     "datasets",
+    "transformers",
     "torchvision"
 ]
 name = "dsa_helpers"
@@ -29,13 +29,13 @@ maintainers = [
 ]
 description = "Utility functions for working with the DSA girder client."
 readme = "README.md"
-requires-python = ">=3.8"
+requires-python = ">=3.9"
 classifiers = [
     "Programming Language :: Python :: 3",
     "License :: OSI Approved :: MIT License",
 ]
 keywords = ["dsa", "girder", "girder_client"]
-version = "v0.5"
+version = "v0.5dev0"
 
 [project.urls]
 Repository = "https://github.com/Gutman-Lab/dsa-python-utils"

{dsa_helpers-0.5 → dsa_helpers-0.5.dev0}/requirements.txt

@@ -2,22 +2,18 @@
 build
 twine
 
-# For tests.
-matplotlib
-jupyter
-
-# Mirrored requirements from pyproject.toml
 girder-client
 numpy
 setuptools
 opencv-python
 pandas
 pymongo
+jupyter
 pillow
 dash
 dash_bootstrap_components
 python-dotenv
-transformers[torch]
 torch
 datasets
+transformers
 torchvision