driftlessmap 1.6.1__tar.gz → 2.0.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (334) hide show
  1. driftlessmap-2.0.0/AUTHOR.txt +9 -0
  2. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/CITATION.cff +6 -4
  3. driftlessmap-2.0.0/CONTRIBUTORS.md +16 -0
  4. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/MANUAL.md +442 -43
  5. driftlessmap-2.0.0/ORIGINS.md +82 -0
  6. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/PKG-INFO +58 -63
  7. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/README.md +54 -59
  8. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/THANKS.txt +3 -3
  9. driftlessmap-2.0.0/UpdateLog.md +354 -0
  10. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/WhatsNew.md +610 -0
  11. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/about.py +6 -5
  12. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/allen_downloader.py +4 -4
  13. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/app.py +1392 -396
  14. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/atlas_downloader.py +3 -3
  15. driftlessmap-2.0.0/driftlessmap/atlas_matching.py +1203 -0
  16. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/atlas_processor.py +2 -2
  17. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/atlas_view.py +62 -9
  18. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/auto_registration.py +95 -21
  19. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/background.py +2 -1
  20. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/czi_reader.py +6 -3
  21. driftlessmap-2.0.0/driftlessmap/file_dialogs.py +113 -0
  22. driftlessmap-2.0.0/driftlessmap/icons/sidebar/fiber.svg +7 -0
  23. driftlessmap-2.0.0/driftlessmap/icons/sidebar/prism.svg +8 -0
  24. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/image_curves.py +14 -12
  25. driftlessmap-2.0.0/driftlessmap/image_reader.py +650 -0
  26. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/image_stacks.py +17 -2
  27. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/image_view.py +70 -14
  28. driftlessmap-2.0.0/driftlessmap/implant_engine.py +505 -0
  29. driftlessmap-2.0.0/driftlessmap/implants.py +821 -0
  30. driftlessmap-2.0.0/driftlessmap/interfaces.py +72 -0
  31. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/layer_geometry.py +30 -0
  32. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/layers_control.py +5 -1
  33. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/main_window.ui +16 -0
  34. driftlessmap-2.0.0/driftlessmap/mapping_records.py +313 -0
  35. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/obj_items.py +16 -1
  36. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/object_control.py +82 -7
  37. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/persistence.py +12 -3
  38. driftlessmap-2.0.0/driftlessmap/pixel_size_dialog.py +64 -0
  39. driftlessmap-2.0.0/driftlessmap/project_io.py +170 -0
  40. driftlessmap-2.0.0/driftlessmap/project_session.py +295 -0
  41. driftlessmap-2.0.0/driftlessmap/registration_channels_dialog.py +76 -0
  42. driftlessmap-2.0.0/driftlessmap/registration_input.py +171 -0
  43. driftlessmap-2.0.0/driftlessmap/registration_review.py +108 -0
  44. driftlessmap-2.0.0/driftlessmap/run_driftlessmap.py +22 -0
  45. driftlessmap-2.0.0/driftlessmap/scale_bar.py +71 -0
  46. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/section_suggestion_dialog.py +72 -15
  47. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/slice_stacks.py +25 -5
  48. driftlessmap-2.0.0/driftlessmap/state_digest.py +48 -0
  49. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/toolbox.py +7 -5
  50. driftlessmap-2.0.0/driftlessmap/transactions.py +148 -0
  51. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/triangulation.py +2 -2
  52. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/user_settings.py +52 -16
  53. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/utils.py +4 -2
  54. driftlessmap-2.0.0/driftlessmap/v2/__init__.py +38 -0
  55. driftlessmap-2.0.0/driftlessmap/v2/__main__.py +5 -0
  56. driftlessmap-2.0.0/driftlessmap/v2/adopted.py +126 -0
  57. driftlessmap-2.0.0/driftlessmap/v2/allen_download_dialog.py +321 -0
  58. driftlessmap-2.0.0/driftlessmap/v2/annotate_panel.py +176 -0
  59. driftlessmap-2.0.0/driftlessmap/v2/channel_display.py +107 -0
  60. driftlessmap-2.0.0/driftlessmap/v2/commands.py +149 -0
  61. driftlessmap-2.0.0/driftlessmap/v2/implant_card.py +528 -0
  62. driftlessmap-2.0.0/driftlessmap/v2/match_panel.py +85 -0
  63. driftlessmap-2.0.0/driftlessmap/v2/outline_editor.py +280 -0
  64. driftlessmap-2.0.0/driftlessmap/v2/probe_card.py +180 -0
  65. driftlessmap-2.0.0/driftlessmap/v2/probes.py +276 -0
  66. driftlessmap-2.0.0/driftlessmap/v2/project_panel.py +76 -0
  67. driftlessmap-2.0.0/driftlessmap/v2/register_panel.py +240 -0
  68. driftlessmap-2.0.0/driftlessmap/v2/results_panel.py +139 -0
  69. driftlessmap-2.0.0/driftlessmap/v2/section_panel.py +528 -0
  70. driftlessmap-2.0.0/driftlessmap/v2/shell.py +984 -0
  71. driftlessmap-2.0.0/driftlessmap/v2/state.py +169 -0
  72. driftlessmap-2.0.0/driftlessmap/v2/theme.py +170 -0
  73. driftlessmap-2.0.0/driftlessmap/v2/widgets.py +256 -0
  74. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/version.py +1 -1
  75. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap.egg-info/PKG-INFO +58 -63
  76. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap.egg-info/SOURCES.txt +50 -0
  77. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap.egg-info/entry_points.txt +1 -0
  78. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap.egg-info/requires.txt +1 -0
  79. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/pyproject.toml +9 -5
  80. driftlessmap-2.0.0/tests/benchmark_project_state.py +39 -0
  81. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/run_test_suite.py +2 -0
  82. driftlessmap-2.0.0/tests/settings_isolation.py +15 -0
  83. driftlessmap-2.0.0/tests/test_atlas_matching.py +550 -0
  84. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_atlas_view.py +57 -5
  85. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_atlas_workers.py +1 -0
  86. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_auto_registration.py +81 -0
  87. driftlessmap-2.0.0/tests/test_file_dialogs.py +75 -0
  88. driftlessmap-2.0.0/tests/test_image_reader.py +380 -0
  89. driftlessmap-2.0.0/tests/test_implant_engine.py +308 -0
  90. driftlessmap-2.0.0/tests/test_implants.py +280 -0
  91. driftlessmap-2.0.0/tests/test_interfaces.py +73 -0
  92. driftlessmap-2.0.0/tests/test_lasso.py +35 -0
  93. driftlessmap-2.0.0/tests/test_mapping_records.py +213 -0
  94. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_object_control.py +2 -1
  95. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_packaging_metadata.py +11 -9
  96. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_persistence.py +34 -0
  97. driftlessmap-2.0.0/tests/test_project_io.py +66 -0
  98. driftlessmap-2.0.0/tests/test_project_persistence.py +1672 -0
  99. driftlessmap-2.0.0/tests/test_registration_input.py +122 -0
  100. driftlessmap-2.0.0/tests/test_registration_review.py +77 -0
  101. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_runtime_paths.py +2 -1
  102. driftlessmap-2.0.0/tests/test_scale_bar.py +66 -0
  103. driftlessmap-2.0.0/tests/test_section_suggestion_dialog.py +64 -0
  104. driftlessmap-2.0.0/tests/test_state_digest.py +37 -0
  105. driftlessmap-2.0.0/tests/test_v2_probes.py +257 -0
  106. driftlessmap-2.0.0/tests/test_v2_shell.py +807 -0
  107. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_version.py +1 -1
  108. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_widgets.py +2 -1
  109. driftlessmap-1.6.1/AUTHOR.txt +0 -18
  110. driftlessmap-1.6.1/CONTRIBUTORS.md +0 -23
  111. driftlessmap-1.6.1/ORIGINS.md +0 -78
  112. driftlessmap-1.6.1/UpdateLog.md +0 -116
  113. driftlessmap-1.6.1/driftlessmap/atlas_matching.py +0 -558
  114. driftlessmap-1.6.1/driftlessmap/image_reader.py +0 -300
  115. driftlessmap-1.6.1/driftlessmap/project_io.py +0 -88
  116. driftlessmap-1.6.1/driftlessmap/run_driftlessmap.py +0 -13
  117. driftlessmap-1.6.1/tests/test_atlas_matching.py +0 -246
  118. driftlessmap-1.6.1/tests/test_image_reader.py +0 -177
  119. driftlessmap-1.6.1/tests/test_project_io.py +0 -34
  120. driftlessmap-1.6.1/tests/test_project_persistence.py +0 -883
  121. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/CONTRIBUTING.md +0 -0
  122. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/LICENSE.txt +0 -0
  123. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/MANIFEST.in +0 -0
  124. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/__init__.py +0 -0
  125. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/__main__.py +0 -0
  126. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/atlas_loader.py +0 -0
  127. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/atlas_transform.py +0 -0
  128. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/cell_detection.py +0 -0
  129. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/coordinate_validation.py +0 -0
  130. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/data/atlas_labels.pkl +0 -0
  131. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/data/query.csv +0 -0
  132. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/download_utils.py +0 -0
  133. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/app/driftlessmap.icns +0 -0
  134. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/app/driftlessmap.ico +0 -0
  135. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/app/driftlessmap.png +0 -0
  136. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/backward.svg +0 -0
  137. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/dot.svg +0 -0
  138. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/down-arrow.svg +0 -0
  139. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/fast_backward.svg +0 -0
  140. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/fast_forward.svg +0 -0
  141. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/forward.svg +0 -0
  142. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/layers/add.png +0 -0
  143. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/layers/ai.png +0 -0
  144. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/layers/eye_off.png +0 -0
  145. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/layers/eye_on.png +0 -0
  146. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/layers/eye_white.png +0 -0
  147. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/layers/hi.png +0 -0
  148. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/layers/trash.png +0 -0
  149. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/object.svg +0 -0
  150. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/add.png +0 -0
  151. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/atlascontrol.png +0 -0
  152. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/atlascontrol.svg +0 -0
  153. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/bnd.svg +0 -0
  154. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/c_section.png +0 -0
  155. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/c_section2.png +0 -0
  156. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/cell.svg +0 -0
  157. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/check.svg +0 -0
  158. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/compare.svg +0 -0
  159. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/contour.svg +0 -0
  160. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/h_section.png +0 -0
  161. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/info.svg +0 -0
  162. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/layers.png +0 -0
  163. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/layers.svg +0 -0
  164. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/line.svg +0 -0
  165. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/link.svg +0 -0
  166. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/link_off.svg +0 -0
  167. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/merge.svg +0 -0
  168. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/object.svg +0 -0
  169. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/probe.png +0 -0
  170. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/probe.svg +0 -0
  171. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/rotation_horizontal.svg +0 -0
  172. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/rotation_vertical.svg +0 -0
  173. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/s_section.png +0 -0
  174. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/tool.png +0 -0
  175. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/tool.svg +0 -0
  176. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/trash.png +0 -0
  177. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/tree_checked.svg +0 -0
  178. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/treeview.png +0 -0
  179. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/treeview.svg +0 -0
  180. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/treeview2.png +0 -0
  181. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/sidebar/virus.svg +0 -0
  182. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/tdown.svg +0 -0
  183. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/accept.svg +0 -0
  184. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/accept2.svg +0 -0
  185. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/aim.svg +0 -0
  186. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/aim_not.svg +0 -0
  187. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/anchor.svg +0 -0
  188. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/anticlockwise_rotation.svg +0 -0
  189. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/atlas_icon.png +0 -0
  190. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/boundary_register.svg +0 -0
  191. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/cancel.svg +0 -0
  192. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/cell_select.svg +0 -0
  193. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/cell_select_not.svg +0 -0
  194. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/check.svg +0 -0
  195. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/clockwise_rotation.svg +0 -0
  196. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/closed_path.svg +0 -0
  197. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/closed_path2 copy.svg +0 -0
  198. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/closed_path2.svg +0 -0
  199. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/eraser.png +0 -0
  200. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/eraser.svg +0 -0
  201. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/eye.svg +0 -0
  202. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/eye_closed.svg +0 -0
  203. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/fill.svg +0 -0
  204. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/gps.svg +0 -0
  205. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/h_flip.png +0 -0
  206. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/handle.png +0 -0
  207. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/image_icon.png +0 -0
  208. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/image_icon.svg +0 -0
  209. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/info.svg +0 -0
  210. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/inpart.png +0 -0
  211. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/inpart.svg +0 -0
  212. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/lasso.png +0 -0
  213. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/lasso.svg +0 -0
  214. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/left90.png +0 -0
  215. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/line.svg +0 -0
  216. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/line_sites.svg +0 -0
  217. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/linear_silicon.png +0 -0
  218. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/linear_silicon.svg +0 -0
  219. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/list.svg +0 -0
  220. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/location.svg +0 -0
  221. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/magic-wand.svg +0 -0
  222. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/magic_white.png +0 -0
  223. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/mask.svg +0 -0
  224. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/match.svg +0 -0
  225. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/matchbnd.svg +0 -0
  226. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/matching.svg +0 -0
  227. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/merge.svg +0 -0
  228. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/move_down.png +0 -0
  229. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/move_left.png +0 -0
  230. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/move_right.png +0 -0
  231. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/move_up.png +0 -0
  232. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/moving.png +0 -0
  233. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/multi-probe.svg +0 -0
  234. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/multi_pencil.svg +0 -0
  235. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/multi_probe.png +0 -0
  236. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/object.svg +0 -0
  237. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/open_path.svg +0 -0
  238. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/outpart.png +0 -0
  239. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/outpart.svg +0 -0
  240. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/pencil.png +0 -0
  241. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/pencil.svg +0 -0
  242. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/plasso.png +0 -0
  243. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/probe.svg +0 -0
  244. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/radar.svg +0 -0
  245. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/rotation.svg +0 -0
  246. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/rotation_clockwise.svg +0 -0
  247. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/rotation_counter_clockwise.svg +0 -0
  248. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/ruler.svg +0 -0
  249. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/separate_sites.svg +0 -0
  250. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/single_pencil.svg +0 -0
  251. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/toa.svg +0 -0
  252. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/toa_delete.svg +0 -0
  253. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/toaa.svg +0 -0
  254. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/toh.svg +0 -0
  255. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/toh_delete.svg +0 -0
  256. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/tohh.svg +0 -0
  257. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/trans.png +0 -0
  258. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/trans.svg +0 -0
  259. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/triangulation.svg +0 -0
  260. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/two_window.png +0 -0
  261. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/unmerge.svg +0 -0
  262. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/v_flip.png +0 -0
  263. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/virus.svg +0 -0
  264. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/virus_register.svg +0 -0
  265. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/vis2d.svg +0 -0
  266. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/window2.png +0 -0
  267. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/window3.png +0 -0
  268. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/toolbar/window4.png +0 -0
  269. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/tree_close.svg +0 -0
  270. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/tree_open.svg +0 -0
  271. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/icons/up-arrow.svg +0 -0
  272. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/label_tree.py +0 -0
  273. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/landmarks.py +0 -0
  274. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/layer_validation.py +0 -0
  275. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/movable_points.py +0 -0
  276. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/probe_csv.py +0 -0
  277. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/probe_reconstruction.py +0 -0
  278. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/probe_utiles.py +0 -0
  279. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/provenance.py +0 -0
  280. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/qss/atlas_view_group_box.qss +0 -0
  281. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/qss/box_label.qss +0 -0
  282. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/qss/channel_selector.qss +0 -0
  283. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/qss/color_combo.qss +0 -0
  284. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/qss/decor_label.qss +0 -0
  285. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/qss/dialogs.qss +0 -0
  286. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/qss/hidden_line_edit.qss +0 -0
  287. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/qss/label_tree.qss +0 -0
  288. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/qss/main_window.qss +0 -0
  289. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/qss/menu_bar.qss +0 -0
  290. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/qss/multi_handle_slider.qss +0 -0
  291. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/qss/obj_ctrl_bottom_button.qss +0 -0
  292. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/qss/object_text_button.qss +0 -0
  293. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/qss/page_control.qss +0 -0
  294. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/qss/rotation_button.qss +0 -0
  295. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/qss/side_bar.qss +0 -0
  296. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/qss/spinbox.qss +0 -0
  297. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/qss/tabs.qss +0 -0
  298. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/qss/tool_bar.qss +0 -0
  299. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/resources.py +0 -0
  300. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/roi_analysis.py +0 -0
  301. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/slice_validation.py +0 -0
  302. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/widgets_utils.py +0 -0
  303. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap/wtiles.py +0 -0
  304. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap.egg-info/dependency_links.txt +0 -0
  305. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/driftlessmap.egg-info/top_level.txt +0 -0
  306. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/setup.cfg +0 -0
  307. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/setup.py +0 -0
  308. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/atlas_fixture.py +0 -0
  309. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_allen_downloader.py +0 -0
  310. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_atlas_cache_integrity.py +0 -0
  311. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_atlas_loader.py +0 -0
  312. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_atlas_transform.py +0 -0
  313. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_background.py +0 -0
  314. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_cell_detection.py +0 -0
  315. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_coordinate_validation.py +0 -0
  316. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_czi_reader.py +0 -0
  317. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_download_utils.py +0 -0
  318. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_editing_tools.py +0 -0
  319. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_histogram_data.py +0 -0
  320. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_image_geometry.py +0 -0
  321. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_label_tree.py +0 -0
  322. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_landmarks.py +0 -0
  323. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_layer_transforms.py +0 -0
  324. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_layer_validation.py +0 -0
  325. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_layers_control.py +0 -0
  326. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_mesh_cache.py +0 -0
  327. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_probe_csv.py +0 -0
  328. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_probe_dialogs.py +0 -0
  329. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_probe_mapping.py +0 -0
  330. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_probe_reconstruction.py +0 -0
  331. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_provenance.py +0 -0
  332. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_roi_analysis.py +0 -0
  333. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_slice_validation.py +0 -0
  334. {driftlessmap-1.6.1 → driftlessmap-2.0.0}/tests/test_triangulation.py +0 -0
driftlessmap-2.0.0/AUTHOR.txt ADDED
@@ -0,0 +1,9 @@
1
+ DriftlessMap authors:
2
+ - Mohebi & Associates: https://www.mohebi-associates.org/
3
+ - Ali Mohebi, PhD: https://www.mohebial.com/
4
+ - Esther Lara Gonzalez, PhD
5
+
6
+ Acknowledgements:
7
+ DriftlessMap grew out of HERBS, now a legacy project, created by Jingyi Guo
8
+ Fuglstad, Pearl Saldanha, Jacopo Paglia and Jonathan R. Whitlock. See
9
+ ORIGINS.md (the HERBS legacy note) and THANKS.txt.
{driftlessmap-1.6.1 → driftlessmap-2.0.0}/CITATION.cff RENAMED
@@ -1,17 +1,19 @@
1
1
  cff-version: 1.2.0
2
2
  message: >-
3
- If you use DriftlessMap, cite the software version you used and the original
4
- HERBS paper listed under references.
3
+ If you use DriftlessMap, cite the software version you used. DriftlessMap
4
+ grew out of HERBS, whose publication is listed under references.
5
5
  title: DriftlessMap
6
6
  type: software
7
- version: 1.6.1
8
- date-released: 2026-09-28
7
+ version: 2.0.0
8
+ date-released: 2026-10-29
9
9
  authors:
10
10
  - name: Mohebi & Associates
11
11
  website: https://www.mohebi-associates.org/
12
12
  - family-names: Mohebi
13
13
  given-names: Ali
14
14
  website: https://www.mohebial.com/
15
+ - family-names: Lara Gonzalez
16
+ given-names: Esther
15
17
  repository-code: https://github.com/mohebi-n-associates/DriftlessMap
16
18
  url: https://github.com/mohebi-n-associates/DriftlessMap
17
19
  license: MIT
driftlessmap-2.0.0/CONTRIBUTORS.md ADDED
@@ -0,0 +1,16 @@
1
+ # Contributors
2
+
3
+ DriftlessMap is developed by:
4
+
5
+ - [Mohebi & Associates](https://www.mohebi-associates.org/)
6
+ - [Ali Mohebi, PhD](https://www.mohebial.com/) — project lead and maintainer
7
+ - Esther Lara Gonzalez, PhD — contributor
8
+ - Additional contributors recorded in the repository's Git history
9
+
10
+ ## Acknowledgements
11
+
12
+ DriftlessMap grew out of [HERBS](https://github.com/Whitlock-Group/HERBS), now
13
+ a legacy project, created by Jingyi Guo Fuglstad, Pearl Saldanha, Jacopo Paglia
14
+ and Jonathan R. Whitlock, with contributions recorded in the inherited Git
15
+ history and in [THANKS.txt](THANKS.txt). The [HERBS legacy note](ORIGINS.md)
16
+ records the connection, the HERBS publication and licensing.