dprs 0.1.10__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (144) hide show
  1. dprs-0.1.10/.github/workflows/CI.yml +203 -0
  2. dprs-0.1.10/.gitignore +79 -0
  3. dprs-0.1.10/Cargo.lock +540 -0
  4. dprs-0.1.10/Cargo.toml +19 -0
  5. dprs-0.1.10/PKG-INFO +57 -0
  6. dprs-0.1.10/README.md +36 -0
  7. dprs-0.1.10/demos/dp_check_1d.py +30 -0
  8. dprs-0.1.10/demos/dp_check_2d.py +30 -0
  9. dprs-0.1.10/demos/dp_check_3d.py +43 -0
  10. dprs-0.1.10/demos/dp_fullcheck_1d.py +52 -0
  11. dprs-0.1.10/demos/dp_fullcheck_2d.py +52 -0
  12. dprs-0.1.10/demos/life_check_gjs.py +46 -0
  13. dprs-0.1.10/docs/HOWTO.md +91 -0
  14. dprs-0.1.10/docs/assets/DP1.png +0 -0
  15. dprs-0.1.10/docs/assets/DP2.png +0 -0
  16. dprs-0.1.10/docs/assets/DP3.png +0 -0
  17. dprs-0.1.10/docs/assets/DP4.png +0 -0
  18. dprs-0.1.10/docs/assets/DP5.png +0 -0
  19. dprs-0.1.10/docs/assets/DP6.png +0 -0
  20. dprs-0.1.10/docs/assets/DP7.png +0 -0
  21. dprs-0.1.10/docs/assets/DP8.png +0 -0
  22. dprs-0.1.10/docs/demos-reference.md +20 -0
  23. dprs-0.1.10/docs/images/DP1.png +0 -0
  24. dprs-0.1.10/docs/images/lattice_p0p538910_s5_nx300.png +0 -0
  25. dprs-0.1.10/docs/images//317/201mean_p0p163145_s1_nx30000_ny30000.png +0 -0
  26. dprs-0.1.10/docs/index.md +26 -0
  27. dprs-0.1.10/docs/javascripts/extra.js +11 -0
  28. dprs-0.1.10/docs/javascripts/mathjax.js +21 -0
  29. dprs-0.1.10/docs/jupyter-notebooks/index.md +10 -0
  30. dprs-0.1.10/docs/python-demos/index.md +11 -0
  31. dprs-0.1.10/docs/python-modules/index.md +6 -0
  32. dprs-0.1.10/docs/python-modules/utils-reference.md +7 -0
  33. dprs-0.1.10/docs/python-modules/viz-reference.md +3 -0
  34. dprs-0.1.10/docs/style.css +7 -0
  35. dprs-0.1.10/docs/tree.jpg +0 -0
  36. dprs-0.1.10/images/Snippet_Henkel2008_Table4p1_APTScalingRelations.jpg +0 -0
  37. dprs-0.1.10/images/Snippet_Henkel2008_Table4p3_DirectedPercolationScaling.jpg +0 -0
  38. dprs-0.1.10/mkdocs.yml +321 -0
  39. dprs-0.1.10/notebooks/dp_1d.ipynb +385 -0
  40. dprs-0.1.10/notebooks/dp_1d_quick.ipynb +490 -0
  41. dprs-0.1.10/notebooks/dp_2d.ipynb +528 -0
  42. dprs-0.1.10/notebooks/essentials.py +10 -0
  43. dprs-0.1.10/pyproject.toml +59 -0
  44. dprs-0.1.10/python/dprs/__init__.py +6 -0
  45. dprs-0.1.10/python/dprs/file.py +265 -0
  46. dprs-0.1.10/python/dprs/initialize.py +58 -0
  47. dprs-0.1.10/python/dprs/serialize.py +175 -0
  48. dprs-0.1.10/python/dprs/utils.py +91 -0
  49. dprs-0.1.10/python/dprs/viz.py +203 -0
  50. dprs-0.1.10/site/404.html +867 -0
  51. dprs-0.1.10/site/HOWTO/index.html +1028 -0
  52. dprs-0.1.10/site/assets/DP1.png +0 -0
  53. dprs-0.1.10/site/assets/DP2.png +0 -0
  54. dprs-0.1.10/site/assets/DP3.png +0 -0
  55. dprs-0.1.10/site/assets/DP4.png +0 -0
  56. dprs-0.1.10/site/assets/DP5.png +0 -0
  57. dprs-0.1.10/site/assets/DP6.png +0 -0
  58. dprs-0.1.10/site/assets/DP7.png +0 -0
  59. dprs-0.1.10/site/assets/DP8.png +0 -0
  60. dprs-0.1.10/site/assets/_mkdocstrings.css +237 -0
  61. dprs-0.1.10/site/assets/images/favicon.png +0 -0
  62. dprs-0.1.10/site/assets/javascripts/bundle.79ae519e.min.js +16 -0
  63. dprs-0.1.10/site/assets/javascripts/bundle.79ae519e.min.js.map +7 -0
  64. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.ar.min.js +1 -0
  65. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.da.min.js +18 -0
  66. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.de.min.js +18 -0
  67. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.du.min.js +18 -0
  68. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.el.min.js +1 -0
  69. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.es.min.js +18 -0
  70. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.fi.min.js +18 -0
  71. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.fr.min.js +18 -0
  72. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.he.min.js +1 -0
  73. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.hi.min.js +1 -0
  74. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.hu.min.js +18 -0
  75. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.hy.min.js +1 -0
  76. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.it.min.js +18 -0
  77. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.ja.min.js +1 -0
  78. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.jp.min.js +1 -0
  79. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.kn.min.js +1 -0
  80. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.ko.min.js +1 -0
  81. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.multi.min.js +1 -0
  82. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.nl.min.js +18 -0
  83. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.no.min.js +18 -0
  84. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.pt.min.js +18 -0
  85. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.ro.min.js +18 -0
  86. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.ru.min.js +18 -0
  87. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.sa.min.js +1 -0
  88. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.stemmer.support.min.js +1 -0
  89. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.sv.min.js +18 -0
  90. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.ta.min.js +1 -0
  91. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.te.min.js +1 -0
  92. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.th.min.js +1 -0
  93. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.tr.min.js +18 -0
  94. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.vi.min.js +1 -0
  95. dprs-0.1.10/site/assets/javascripts/lunr/min/lunr.zh.min.js +1 -0
  96. dprs-0.1.10/site/assets/javascripts/lunr/tinyseg.js +206 -0
  97. dprs-0.1.10/site/assets/javascripts/lunr/wordcut.js +6708 -0
  98. dprs-0.1.10/site/assets/javascripts/workers/search.2c215733.min.js +42 -0
  99. dprs-0.1.10/site/assets/javascripts/workers/search.2c215733.min.js.map +7 -0
  100. dprs-0.1.10/site/assets/stylesheets/main.484c7ddc.min.css +1 -0
  101. dprs-0.1.10/site/assets/stylesheets/main.484c7ddc.min.css.map +1 -0
  102. dprs-0.1.10/site/assets/stylesheets/palette.ab4e12ef.min.css +1 -0
  103. dprs-0.1.10/site/assets/stylesheets/palette.ab4e12ef.min.css.map +1 -0
  104. dprs-0.1.10/site/demos-reference/index.html +1044 -0
  105. dprs-0.1.10/site/images/DP1.png +0 -0
  106. dprs-0.1.10/site/images/lattice_p0p538910_s5_nx300.png +0 -0
  107. dprs-0.1.10/site/images//317/201mean_p0p163145_s1_nx30000_ny30000.png +0 -0
  108. dprs-0.1.10/site/index.html +1023 -0
  109. dprs-0.1.10/site/javascripts/extra.js +11 -0
  110. dprs-0.1.10/site/javascripts/mathjax.js +21 -0
  111. dprs-0.1.10/site/jupyter-notebooks/index.html +965 -0
  112. dprs-0.1.10/site/objects.inv +5 -0
  113. dprs-0.1.10/site/python-demos/index.html +971 -0
  114. dprs-0.1.10/site/python-modules/index.html +962 -0
  115. dprs-0.1.10/site/python-modules/utils-reference/index.html +1184 -0
  116. dprs-0.1.10/site/python-modules/viz-reference/index.html +1586 -0
  117. dprs-0.1.10/site/search/search_index.json +1 -0
  118. dprs-0.1.10/site/sitemap.xml +35 -0
  119. dprs-0.1.10/site/sitemap.xml.gz +0 -0
  120. dprs-0.1.10/site/style.css +7 -0
  121. dprs-0.1.10/site/tree.jpg +0 -0
  122. dprs-0.1.10/src/dp/cell_model_1d.rs +25 -0
  123. dprs-0.1.10/src/dp/cell_model_2d.rs +25 -0
  124. dprs-0.1.10/src/dp/cell_model_3d.rs +27 -0
  125. dprs-0.1.10/src/dp/dp_model_1d.rs +47 -0
  126. dprs-0.1.10/src/dp/dp_model_2d.rs +67 -0
  127. dprs-0.1.10/src/dp/dp_model_3d.rs +50 -0
  128. dprs-0.1.10/src/dp/lattice_model_1d.rs +203 -0
  129. dprs-0.1.10/src/dp/lattice_model_2d.rs +282 -0
  130. dprs-0.1.10/src/dp/lattice_model_3d.rs +366 -0
  131. dprs-0.1.10/src/dp/nbrhood_3d.rs +181 -0
  132. dprs-0.1.10/src/dp/run_simulation_1d.rs +74 -0
  133. dprs-0.1.10/src/dp/run_simulation_2d.rs +82 -0
  134. dprs-0.1.10/src/dp/run_simulation_3d.rs +87 -0
  135. dprs-0.1.10/src/dp/simulation_1d.rs +98 -0
  136. dprs-0.1.10/src/dp/simulation_2d.rs +98 -0
  137. dprs-0.1.10/src/dp/simulation_3d.rs +103 -0
  138. dprs-0.1.10/src/dp.rs +65 -0
  139. dprs-0.1.10/src/lib.rs +13 -0
  140. dprs-0.1.10/src/parameters.rs +224 -0
  141. dprs-0.1.10/src/sim.rs +36 -0
  142. dprs-0.1.10/src/tests/mod.rs +1 -0
  143. dprs-0.1.10/src/tests/nbrhood_3d.rs +172 -0
  144. dprs-0.1.10/tree.jpg +0 -0
@@ -0,0 +1,203 @@
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+ # This file is autogenerated by maturin v1.12.4
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+ # To update, run
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+ #
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+ # maturin generate-ci github
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+ #
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+ name: CI
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+
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+ # on:
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+ # release:
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+ # types: [published]
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+
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+ # Turn CI off for now (including for PRs!) for invoking push to
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+ # master branch, which will never exist
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+ on:
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+ push:
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+ branches:
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+ - testpypi
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+ # - master
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+ tags:
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+ - '*'
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+ # # pull_request:
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+ workflow_dispatch:
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+
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+ permissions:
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+ contents: read
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+
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+ jobs:
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+ linux:
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+ runs-on: ${{ matrix.platform.runner }}
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+ strategy:
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+ matrix:
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+ platform:
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+ - runner: ubuntu-22.04
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+ target: x86_64
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+ # - runner: ubuntu-22.04
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+ # target: x86
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+ # - runner: ubuntu-22.04
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+ # target: aarch64
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+ # - runner: ubuntu-22.04
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+ # target: armv7
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+ # - runner: ubuntu-22.04
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+ # target: s390x
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+ # - runner: ubuntu-22.04
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+ # target: ppc64le
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+ steps:
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+ - uses: actions/checkout@v6
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+ - uses: actions/setup-python@v6
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+ with:
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+ python-version: 3.x
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+ - name: Build wheels
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+ uses: PyO3/maturin-action@v1
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+ with:
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+ target: ${{ matrix.platform.target }}
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+ args: --release --out dist --find-interpreter
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+ sccache: ${{ github.event_name == 'workflow_dispatch' }}
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+ # sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
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+ manylinux: auto
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+ - name: Upload wheels
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+ uses: actions/upload-artifact@v5
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+ with:
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+ name: wheels-linux-${{ matrix.platform.target }}
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+ path: dist
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+
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+ # musllinux:
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+ # runs-on: ${{ matrix.platform.runner }}
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+ # strategy:
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+ # matrix:
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+ # platform:
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+ # - runner: ubuntu-22.04
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+ # target: x86_64
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+ # - runner: ubuntu-22.04
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+ # target: x86
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+ # - runner: ubuntu-22.04
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+ # target: aarch64
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+ # - runner: ubuntu-22.04
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+ # target: armv7
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+ # steps:
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+ # - uses: actions/checkout@v6
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+ # - uses: actions/setup-python@v6
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+ # with:
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+ # python-version: 3.x
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+ # - name: Build wheels
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+ # uses: PyO3/maturin-action@v1
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+ # with:
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+ # target: ${{ matrix.platform.target }}
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+ # args: --release --out dist --find-interpreter
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+ # sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
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+ # manylinux: musllinux_1_2
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+ # - name: Upload wheels
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+ # uses: actions/upload-artifact@v5
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+ # with:
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+ # name: wheels-musllinux-${{ matrix.platform.target }}
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+ # path: dist
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+
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+ windows:
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+ runs-on: ${{ matrix.platform.runner }}
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+ strategy:
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+ matrix:
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+ platform:
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+ - runner: windows-latest
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+ target: x64
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+ python_arch: x64
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+ # - runner: windows-latest
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+ # target: x86
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+ # python_arch: x86
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+ # - runner: windows-11-arm
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+ # target: aarch64
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+ # python_arch: arm64
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+ steps:
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+ - uses: actions/checkout@v6
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+ - uses: actions/setup-python@v6
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+ with:
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+ python-version: 3.13
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+ architecture: ${{ matrix.platform.python_arch }}
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+ - name: Build wheels
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+ uses: PyO3/maturin-action@v1
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+ with:
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+ target: ${{ matrix.platform.target }}
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+ args: --release --out dist --find-interpreter
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+ sccache: ${{ github.event_name == 'workflow_dispatch' }}
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+ # sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
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+ - name: Upload wheels
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+ uses: actions/upload-artifact@v5
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+ with:
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+ name: wheels-windows-${{ matrix.platform.target }}
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+ path: dist
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+
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+ macos:
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+ runs-on: ${{ matrix.platform.runner }}
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+ strategy:
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+ matrix:
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+ platform:
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+ # - runner: macos-15-intel
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+ # target: x86_64
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+ - runner: macos-latest
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+ target: aarch64
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+ steps:
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+ - uses: actions/checkout@v6
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+ - uses: actions/setup-python@v6
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+ with:
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+ python-version: 3.x
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+ - name: Build wheels
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+ uses: PyO3/maturin-action@v1
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+ with:
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+ target: ${{ matrix.platform.target }}
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+ args: --release --out dist --find-interpreter
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+ sccache: ${{ github.event_name == 'workflow_dispatch' }}
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+ # sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
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+ - name: Upload wheels
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+ uses: actions/upload-artifact@v5
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+ with:
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+ name: wheels-macos-${{ matrix.platform.target }}
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+ path: dist
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+
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+ sdist:
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+ runs-on: ubuntu-latest
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+ steps:
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+ - uses: actions/checkout@v6
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+ - name: Build sdist
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+ uses: PyO3/maturin-action@v1
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+ with:
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+ command: sdist
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+ args: --out dist
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+ - name: Upload sdist
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+ uses: actions/upload-artifact@v5
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+ with:
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+ name: wheels-sdist
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+ path: dist
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+
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+ #### {{ startsWith(github.ref, 'refs/tags/') || github.event_name == 'workflow_dispatch' }}
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+ release:
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+ name: Release
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+ runs-on: ubuntu-latest
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+ # if: ${{ github.event_name == 'workflow_dispatch' }}
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+ needs: [linux, windows, macos, sdist]
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+ # needs: [linux, musllinux, windows, macos, sdist]
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+ permissions:
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+ # Use to sign the release artifacts
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+ id-token: write
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+ # Used to upload release artifacts
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+ contents: write
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+ # Used to generate artifact attestation
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+ attestations: write
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+ steps:
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+ - name: Download artifacts
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+ uses: actions/download-artifact@v6
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+ with:
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+ path: dist/
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+ - name: Check download
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+ run: |
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+ ls -lR dist/
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+ - name: Generate artifact attestation
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+ uses: actions/attest-build-provenance@v3
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+ with:
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+ subject-path: 'dist/wheels-*/*'
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+ - name: Install uv
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+ # if: ${{ startsWith(github.ref, 'refs/tags/') }}
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+ uses: astral-sh/setup-uv@v7
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+ - name: Publish to PyPI
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+ # if: ${{ startsWith(github.ref, 'refs/tags/') }}
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+ run: uv publish 'dist/wheels-*/*'
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+ env:
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+ UV_PUBLISH_TOKEN: ${{ secrets.PYPI_API_TOKEN }}
dprs-0.1.10/.gitignore ADDED
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+ notebooks/plots/*
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+ plots/*
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+
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+ /target
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+ python/dprs/libdprs.dylib.dSYM/
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+
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+ # Byte-compiled / optimized / DLL files
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+ __pycache__/
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+ .pytest_cache/
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+ *.py[cod]
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+
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+ # C extensions
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+ *.so
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+
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+ # Distribution / packaging
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+ .Python
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+ .venv/
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+ env/
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+ bin/
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+ build/
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+ develop-eggs/
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+ dist/
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+ eggs/
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+ lib/
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+ lib64/
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+ parts/
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+ sdist/
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+ var/
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+ include/
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+ man/
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+ venv/
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+ *.egg-info/
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+ .installed.cfg
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+ *.egg
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+
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+ # Installer logs
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+ pip-log.txt
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+ pip-delete-this-directory.txt
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+ pip-selfcheck.json
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+
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+ # Unit test / coverage reports
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+ htmlcov/
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+ .tox/
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+ .coverage
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+ .cache
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+ nosetests.xml
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+ coverage.xml
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+
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+ # Translations
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+ *.mo
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+
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+ # Mr Developer
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+ .mr.developer.cfg
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+ .project
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+ .pydevproject
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+
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+ # Rope
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+ .ropeproject
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+
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+ # Django stuff:
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+ *.log
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+ *.pot
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+
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+ .DS_Store
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+
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+ # Sphinx documentation
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+ docs/_build/
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+
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+ # PyCharm
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+ .idea/
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+
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+ # VSCode
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+ .vscode/
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+
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+ # Pyenv
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+ .python-version
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+
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+
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+ .notes