docworkspace 0.2.2__tar.gz → 0.2.4__tar.gz

{docworkspace-0.2.2 → docworkspace-0.2.4}/PKG-INFO

@@ -1,9 +1,9 @@
 Metadata-Version: 2.4
 Name: docworkspace
-Version: 0.2.2
+Version: 0.2.4
 Summary: A workspace library for managing Polars dataframes with parent-child relationships and lazy evaluation
 Requires-Python: >=3.14
-Requires-Dist: polars-text>=0.1.2
+Requires-Dist: polars-text>=0.1.3
 Description-Content-Type: text/markdown
 
 # DocWorkspace

{docworkspace-0.2.2 → docworkspace-0.2.4}/pyproject.toml

@@ -1,10 +1,10 @@
 [project]
 name = "docworkspace"
-version = "0.2.2"
+version = "0.2.4"
 description = "A workspace library for managing Polars dataframes with parent-child relationships and lazy evaluation"
 readme = "README.md"
 requires-python = ">=3.14"
-dependencies = ["polars-text>=0.1.2"]
+dependencies = ["polars-text>=0.1.3"]
 
 [build-system]
 requires = ["hatchling"]

{docworkspace-0.2.2 → docworkspace-0.2.4}/src/docworkspace/workspace/__init__.py

@@ -8,9 +8,11 @@ analysis and graph views so internal relative imports
 from .analysis import graph_json  # noqa: F401
 from .analysis import info_json  # noqa: F401
 from .core import Workspace  # noqa: F401
+from .io import rebase_workspace_sources  # noqa: F401
 
 __all__ = [
     "Workspace",
     "info_json",
     "graph_json",
+    "rebase_workspace_sources",
 ]

docworkspace-0.2.4/src/docworkspace/workspace/io.py

@@ -0,0 +1,185 @@
+"""Workspace file persistence helpers."""
+
+from __future__ import annotations
+
+import json
+from pathlib import Path
+from typing import TYPE_CHECKING, Any, Dict, Iterable, Union
+
+from polars_text import list_source_paths, replace_source_paths
+
+if TYPE_CHECKING:  # pragma: no cover
+    from .core import Workspace
+
+from ..node.io import NODE_DATA_DIR
+from ..node.io import from_dict as node_from_dict
+from ..node.io import to_dict as node_to_dict
+
+
+def _resolve_metadata_path(path: Path) -> Path:
+    if path.is_dir():
+        return path / "metadata.json"
+    if path.suffix.lower() == ".json":
+        return path
+    raise ValueError("Workspace path must be a directory or a .json file")
+
+
+def _collect_referenced_sources(plbin_paths: Iterable[Path]) -> set[Path]:
+    """Return the set of absolute source paths referenced by every plbin plan."""
+
+    referenced: set[Path] = set()
+    for plbin in plbin_paths:
+        for raw in list_source_paths(plbin):
+            referenced.add(Path(raw).resolve())
+    return referenced
+
+
+def _rebase_plan_sources(plbin_path: Path, data_dir: Path) -> None:
+    """Rewrite scan source paths inside ``plbin_path`` to ``data_dir`` by basename.
+
+    Only paths whose basename exists under ``data_dir`` and whose stored value
+    differs from the resolved target are rewritten. Paths that already match
+    the current workspace layout are left untouched.
+    """
+
+    current_sources = list_source_paths(plbin_path)
+    if not current_sources:
+        return
+
+    mapping: dict[str, str] = {}
+    for old in current_sources:
+        target = (data_dir / Path(old).name).resolve()
+        if not target.exists():
+            continue
+        target_str = str(target)
+        if old == target_str:
+            continue
+        mapping[old] = target_str
+
+    if mapping:
+        replace_source_paths(plbin_path, mapping)
+
+
+def _garbage_collect_workspace_data(
+    ws_root_dir: Path, nodes_data: list[dict[str, Any]]
+) -> None:
+    """Remove unreferenced parquet and plbin files from the workspace data dir.
+
+    * Parquet files not referenced by any registered node's plan are deleted.
+    * Plbin files whose name does not match a registered node's ``data_path``
+      are deleted (they belong to nodes no longer in the workspace).
+    """
+
+    data_dir = ws_root_dir / NODE_DATA_DIR
+    if not data_dir.exists() or not data_dir.is_dir():
+        return
+
+    expected_plbin_names = {
+        Path(str(node_payload["data_path"])).name for node_payload in nodes_data
+    }
+    registered_plbins = [
+        data_dir / name for name in expected_plbin_names if (data_dir / name).exists()
+    ]
+
+    referenced_sources = _collect_referenced_sources(registered_plbins)
+
+    for candidate in data_dir.iterdir():
+        if not candidate.is_file():
+            continue
+        suffix = candidate.suffix.lower()
+        if suffix == ".plbin":
+            if candidate.name not in expected_plbin_names:
+                candidate.unlink(missing_ok=True)
+        elif suffix == ".parquet":
+            if candidate.resolve() not in referenced_sources:
+                candidate.unlink(missing_ok=True)
+
+
+def write_workspace(workspace: "Workspace", path: Union[str, Path]) -> None:
+    target = _resolve_metadata_path(Path(path))
+    target.parent.mkdir(parents=True, exist_ok=True)
+    workspace.ws_root_dir = target.parent
+
+    description = workspace.description
+    created_at = workspace.created_at
+    modified_at = workspace.modified_at
+
+    nodes_data: list[dict[str, Any]] = []
+    for node in workspace.nodes.values():
+        nodes_data.append(node_to_dict(node))
+
+    workspace_metadata: Dict[str, Any] = {
+        "id": workspace.id,
+        "name": workspace.name,
+        "version": 2,
+        "description": description,
+        "created_at": created_at,
+        "modified_at": modified_at,
+    }
+
+    data = {"workspace_metadata": workspace_metadata, "nodes": nodes_data}
+    with target.open("w", encoding="utf-8") as f:
+        json.dump(data, f, ensure_ascii=False, indent=2)
+
+    _garbage_collect_workspace_data(target.parent, nodes_data)
+
+
+def read_workspace_metadata(path: Union[str, Path]) -> Dict[str, Any]:
+    """Load and return the workspace metadata dictionary from metadata.json.
+
+    This helper only reads/parses the JSON metadata file and does not attempt
+    to load any node data payload files.
+    """
+
+    target = _resolve_metadata_path(Path(path))
+    with target.open("r", encoding="utf-8") as f:
+        return json.load(f)
+
+
+def read_workspace(path: Union[str, Path]) -> "Workspace":
+    from .core import Workspace
+
+    target = _resolve_metadata_path(Path(path))
+    data = read_workspace_metadata(path)
+
+    ws_meta = data.get("workspace_metadata", {})
+    workspace = Workspace(
+        name=ws_meta.get("name", "restored_workspace"),
+        ws_root_dir=target.parent,
+    )
+    workspace.id = ws_meta.get("id", workspace.id)
+    workspace.description = ws_meta.get("description", "") or ""
+    workspace.created_at = ws_meta.get("created_at")
+    workspace.modified_at = ws_meta.get("modified_at")
+
+    for node_entry in data.get("nodes", []):
+        workspace.add_node(node_from_dict(node_entry, workspace=workspace))
+
+    return workspace
+
+
+def rebase_workspace_sources(path: Union[str, Path]) -> None:
+    """Rewrite stale scan source paths inside every plbin listed in ``metadata.json``.
+
+    Call this **after** the workspace folder has reached its final location on
+    disk (i.e. after any rename / move) but **before** deserializing the
+    workspace nodes into memory, so that ``LazyFrame.deserialize`` sees paths
+    that match the current filesystem.
+    """
+
+    target = _resolve_metadata_path(Path(path))
+    data = read_workspace_metadata(path)
+    data_dir = (target.parent / NODE_DATA_DIR).resolve()
+
+    for node_entry in data.get("nodes", []):
+        plbin_abs = (target.parent / Path(str(node_entry["data_path"]))).resolve()
+        if plbin_abs.exists():
+            _rebase_plan_sources(plbin_abs, data_dir)
+
+
+__all__ = [
+    "write_workspace",
+    "read_workspace_metadata",
+    "read_workspace",
+    "rebase_workspace_sources",
+]

docworkspace-0.2.4/tests/test_workspace_io_absolute_paths.py

@@ -0,0 +1,128 @@
+"""Workspace save-time garbage collection and load-time path rebasing."""
+
+from __future__ import annotations
+
+import shutil
+from pathlib import Path
+from typing import cast
+
+import polars as pl
+from polars_text import list_source_paths
+
+from docworkspace.node import Node
+from docworkspace.workspace import Workspace
+from docworkspace.workspace.io import rebase_workspace_sources
+
+
+def _make_parquet(path: Path, df: pl.DataFrame) -> None:
+    path.parent.mkdir(parents=True, exist_ok=True)
+    df.write_parquet(path)
+
+
+def test_save_removes_orphan_parquet_and_plbin(tmp_path: Path):
+    ws_root = tmp_path / "ws"
+    ws_root.mkdir()
+    data_dir = ws_root / "data"
+    data_dir.mkdir()
+
+    kept_parquet = data_dir / "kept.parquet"
+    _make_parquet(kept_parquet, pl.DataFrame({"a": [1, 2, 3]}))
+
+    orphan_parquet = data_dir / "orphan.parquet"
+    _make_parquet(orphan_parquet, pl.DataFrame({"b": [9]}))
+
+    orphan_plbin = data_dir / "ghost-node-id.plbin"
+    orphan_plbin.write_bytes(b"not-a-real-plan")
+
+    ws = Workspace(name="gc_ws", ws_root_dir=ws_root)
+    lazy = pl.scan_parquet(kept_parquet.resolve())
+    ws.add_node(Node(data=lazy, name="kept"))
+
+    ws.save(ws_root)
+
+    assert kept_parquet.exists(), "Referenced parquet must be kept"
+    assert not orphan_parquet.exists(), "Unreferenced parquet must be deleted"
+    assert not orphan_plbin.exists(), "Unregistered plbin must be deleted"
+
+    plbin_files = list(data_dir.glob("*.plbin"))
+    assert len(plbin_files) == 1
+    sources = list_source_paths(plbin_files[0])
+    assert any(Path(s) == kept_parquet.resolve() for s in sources)
+
+
+def test_rebase_then_load_after_workspace_move(tmp_path: Path):
+    """Simulate the real backend flow: rebase plbin files, then load workspace."""
+
+    original_root = tmp_path / "original"
+    original_root.mkdir()
+    data_dir = original_root / "data"
+    data_dir.mkdir()
+
+    parquet_path = data_dir / "input.parquet"
+    _make_parquet(parquet_path, pl.DataFrame({"x": [10, 20, 30]}))
+
+    ws = Workspace(name="move_ws", ws_root_dir=original_root)
+    lazy = pl.scan_parquet(parquet_path.resolve())
+    ws.add_node(Node(data=lazy, name="input"))
+    ws.save(original_root)
+
+    moved_root = tmp_path / "moved"
+    shutil.copytree(original_root, moved_root)
+    shutil.rmtree(original_root)
+
+    # Rebase on disk BEFORE loading (mirrors backend set_current_workspace).
+    rebase_workspace_sources(moved_root)
+
+    ws_reloaded = Workspace.load(moved_root)
+    assert len(ws_reloaded.nodes) == 1
+    node = next(iter(ws_reloaded.nodes.values()))
+
+    collected = cast(pl.DataFrame, node.data.collect())
+    assert collected.to_series().to_list() == [10, 20, 30]
+
+    plbin_files = list((moved_root / "data").glob("*.plbin"))
+    sources = list_source_paths(plbin_files[0])
+    moved_parquet = (moved_root / "data" / "input.parquet").resolve()
+    assert all(Path(s) == moved_parquet for s in sources)
+
+
+def test_rebase_then_rename_then_save_keeps_parquet(tmp_path: Path):
+    """Repro for the reported bug: rename folder after save, then load + unload.
+
+    Sequence:
+      1. Save workspace in folder A.
+      2. Rename folder A → B (simulating user rename).
+      3. rebase_workspace_sources(B)  →  plbin paths point at B/data/…
+      4. Load workspace from B.
+      5. Save workspace back to B.
+      6. Parquet referenced by the node must survive GC.
+    """
+
+    folder_a = tmp_path / "Test"
+    folder_a.mkdir()
+    data_dir = folder_a / "data"
+    data_dir.mkdir()
+
+    parquet_path = data_dir / "my_data.parquet"
+    _make_parquet(parquet_path, pl.DataFrame({"v": [100, 200]}))
+
+    ws = Workspace(name="Test", ws_root_dir=folder_a)
+    ws.add_node(Node(data=pl.scan_parquet(parquet_path.resolve()), name="node"))
+    ws.save(folder_a)
+
+    # User renames the folder on disk.
+    folder_b = tmp_path / "Test_New"
+    folder_a.rename(folder_b)
+
+    # Backend flow: rebase → load → (later) save.
+    rebase_workspace_sources(folder_b)
+    ws2 = Workspace.load(folder_b)
+    assert len(ws2.nodes) == 1
+
+    # Verify data is accessible after rename.
+    node = next(iter(ws2.nodes.values()))
+    assert cast(pl.DataFrame, node.data.collect()).to_series().to_list() == [100, 200]
+
+    # Save (triggers GC) — the parquet must survive.
+    ws2.save(folder_b)
+    assert (folder_b / "data" / "my_data.parquet").exists()

docworkspace-0.2.4/uv.lock

@@ -0,0 +1,125 @@
+version = 1
+revision = 3
+requires-python = ">=3.14"
+
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+]
+
+[[package]]
+name = "docworkspace"
+version = "0.2.4"
+source = { editable = "." }
+dependencies = [
+    { name = "polars-text" },
+]
+
+[package.dev-dependencies]
+dev = [
+    { name = "pytest" },
+]
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docworkspace-0.2.2/src/docworkspace/workspace/io.py

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-"""Workspace file persistence helpers."""
-
-from __future__ import annotations
-
-import json
-from pathlib import Path
-from typing import TYPE_CHECKING, Any, Dict, Union
-
-if TYPE_CHECKING:  # pragma: no cover
-    from .core import Workspace
-
-from ..node.io import from_dict as node_from_dict
-from ..node.io import to_dict as node_to_dict
-
-
-def _resolve_metadata_path(path: Path) -> Path:
-    if path.is_dir():
-        return path / "metadata.json"
-    if path.suffix.lower() == ".json":
-        return path
-    raise ValueError("Workspace path must be a directory or a .json file")
-
-
-def write_workspace(workspace: "Workspace", path: Union[str, Path]) -> None:
-    target = _resolve_metadata_path(Path(path))
-    target.parent.mkdir(parents=True, exist_ok=True)
-    workspace.ws_root_dir = target.parent
-
-    description = workspace.description
-    created_at = workspace.created_at
-    modified_at = workspace.modified_at
-
-    nodes_data: list[dict[str, Any]] = []
-    for node in workspace.nodes.values():
-        nodes_data.append(node_to_dict(node))
-
-    workspace_metadata: Dict[str, Any] = {
-        "id": workspace.id,
-        "name": workspace.name,
-        "version": 2,
-        "description": description,
-        "created_at": created_at,
-        "modified_at": modified_at,
-    }
-
-    data = {"workspace_metadata": workspace_metadata, "nodes": nodes_data}
-    with target.open("w", encoding="utf-8") as f:
-        json.dump(data, f, ensure_ascii=False, indent=2)
-
-    try:
-        data_dir = target.parent / "data"
-        expected_node_files = {
-            Path(str(node_payload["data_path"])).name for node_payload in nodes_data
-        }
-        if data_dir.exists() and data_dir.is_dir():
-            for candidate in data_dir.glob("*.plbin"):
-                if candidate.name not in expected_node_files:
-                    candidate.unlink(missing_ok=True)
-    except Exception:
-        pass
-
-
-def read_workspace_metadata(path: Union[str, Path]) -> Dict[str, Any]:
-    """Load and return the workspace metadata dictionary from metadata.json.
-
-    This helper only reads/parses the JSON metadata file and does not attempt
-    to load any node data payload files.
-    """
-
-    target = _resolve_metadata_path(Path(path))
-    with target.open("r", encoding="utf-8") as f:
-        return json.load(f)
-
-
-def read_workspace(path: Union[str, Path]) -> "Workspace":
-    from .core import Workspace
-
-    target = _resolve_metadata_path(Path(path))
-    data = read_workspace_metadata(path)
-
-    ws_meta = data.get("workspace_metadata", {})
-    workspace = Workspace(
-        name=ws_meta.get("name", "restored_workspace"),
-        ws_root_dir=target.parent,
-    )
-    workspace.id = ws_meta.get("id", workspace.id)
-    workspace.description = ws_meta.get("description", "") or ""
-    workspace.created_at = ws_meta.get("created_at")
-    workspace.modified_at = ws_meta.get("modified_at")
-
-    for node_entry in data.get("nodes", []):
-        workspace.add_node(node_from_dict(node_entry, workspace=workspace))
-
-    return workspace
-
-
-__all__ = [
-    "write_workspace",
-    "read_workspace_metadata",
-    "read_workspace",
-]

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