PyPI - dna-design-suite - Versions diffs - 0.1.0__tar.gz - Mend

dna-design-suite 0.1.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (201) hide show

dna_design_suite-0.1.0/Cargo.lock ADDED Viewed

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dna_design_suite-0.1.0/Cargo.toml ADDED Viewed

@@ -0,0 +1,43 @@
+[workspace]
+resolver = "2"
+members = ["crates/*"]
+[workspace.package]
+version = "0.1.0"
+edition = "2021"
+license = "Apache-2.0"
+rust-version = "1.75"
+repository = "https://github.com/HT-alpha/iGEM-Codon-Optimization-Tool"
+# Dependency policy (see planning/00-scope/03-architecture-amendments.md AMD-009
+# and RISK-DEP-001/002): every dependency must be redistributable under
+# Apache-2.0. ViennaRNA, LinearFold and LinearDesign are excluded from the
+# dependency tree entirely - not as an optional feature, not behind a flag.
+# Structure prediction goes through the StructureEngine seam against the
+# permissive native kernel.
+[workspace.dependencies]
+serde = { version = "1", features = ["derive"] }
+# `float_roundtrip` is not optional here. Without it serde_json parses floats
+# through a fast path that can land one ulp away from the value that was
+# written, so a document carrying an f64 does not survive a write-read cycle.
+# Every checkpoint in this system carries floats — objective vectors,
+# hypervolume history, constraint violations — so a resumed run would diverge
+# from an uninterrupted one by a rounding error, which is precisely what
+# GATE-REPRO-001 forbids. Found when a tier-3 resume diverged and the diff came
+# down to 0.40476190476190477 becoming 0.4047619047619048.
+serde_json = { version = "1", features = ["float_roundtrip"] }
+sha2 = "0.10"
+regex = "1"
+[profile.release]
+lto = "thin"
+codegen-units = 1
+panic = "abort"
+# The search engine is unusable at `dev` optimization levels, and the
+# property tests in cf-types/cf-constraints run 10^4-10^6 iterations.
+[profile.dev]
+opt-level = 1
+[profile.test]
+opt-level = 1