dkist-processing-trend 0.1.0rc4__tar.gz → 0.2.0__tar.gz

{dkist_processing_trend-0.1.0rc4 → dkist_processing_trend-0.2.0}/.snyk

@@ -2,10 +2,6 @@
 # https://docs.snyk.io/manage-risk/policies/the-.snyk-file#syntax-of-the-.snyk-file
 version: v1.25.0
 ignore:
-  SNYK-PYTHON-APACHEAIRFLOWCORE-17879182:
-    - "*" :
-        reason: 'Patched in Airflow 3.3.0, but we are not ready to upgrade till 3.3.1 or later'
-        expires: '2027-07-07T00:00:00.000Z'
   SNYK-PYTHON-APACHEAIRFLOWCORE-17933331:
     - '*':
         reason: 'Ignored by bulk CI/CD Snyk policy update'

dkist_processing_trend-0.2.0/CHANGELOG.rst

@@ -0,0 +1,44 @@
+v0.2.0 (2026-10-05)
+===================
+
+Features
+--------
+
+- Add Parse task and associated machinery (models for constants, fits_access, parameters, tags, etc.) (`#1 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/1>`__)
+- Add `TrendArmTaskBase` that allows a child task to only process data from a specific instrument arm. (`#2 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/2>`__)
+- Add `DarkCalibration` task. (`#2 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/2>`__)
+- Add `GainCalibration` task. (`#2 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/2>`__)
+- Add `RunPacFitter` task for sending data to the demodulation machinery of `dkist-processing-pac`. (`#3 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/3>`__)
+- Add `ParameterInstrumentMixin` that allows parameters to be split across diferent instruments. (`#3 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/3>`__)
+- Add `WriteTrendOutputs` task and *lots* of related machinery (mostly the parsers and models needed to build up output headers from scratch). (`#4 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/4>`__)
+- Add `PrepareFitDataBase`, a base task used to create instrument-specific children that prepares data for fitting by `dkist-processing-pac`. (`#5 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/5>`__)
+- Add `VispGeometricCalibration` task for measuring ViSP beam offset and rotation. (`#6 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/6>`__)
+- Add `VispProcessDemodulationMatrices` task that prepares raw fit demodulation matrices for the DMPD task. (`#6 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/6>`__)
+- Add the `visp_extract_beam` module for beam-extracting bliss. (`#6 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/6>`__)
+- Add the `clean_array` module that provides a function for cleaning non-finite values from an array. Useful prior to any interpolation. (`#6 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/6>`__)
+- Add `VispDemodulatedPolcalData` task that produces Demodulated Polcal Data (DMPD). (`#6 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/6>`__)
+- Add `VispPrepareFitData`, a subclass of `PrepareFitDataBase` that preps data for fitting with `dkist-processing-pac`. (`#6 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/6>`__)
+- Add `local_trial_workflows` module for running local (AKA GROGU) tests and a local version of the ViSP workflow. (`#8 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/8>`__)
+- Add a workflow definition for ViSP: `l0_to_trend_visp_polcal`. (`#8 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/8>`__)
+- Add arm-specific classes for all common task classes (e.g., `VispArm1DarkCalibration`, `DlnirspJbandRunPacFitter`, etc.). (`#8 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/8>`__)
+- Add `TransferTrendData` task for transferring output files out of scratch. (`#9 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/9>`__)
+- Add `PublishTrendCatalogMessages` for publishing information about the OUTPUT frames. (`#9 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/9>`__)
+
+
+Misc
+----
+
+- Update the operation of `TrendArmTaskBase` to skip a run at the `__call__` level.
+  This means that tasks with no data for there arm will no longer create provenance records. (`#8 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/8>`__)
+
+
+Documentation
+-------------
+
+- Add online documentation pages and the machinery to build them. (`#7 <https://bitbucket.org/dkistdc/dkist-processing-trend/pull-requests/7>`__)
+
+
+v0.1.0 (2026-08-36)
+===================
+
+- First release. For setting up integration testing machinery. Never use this version for anything. It was built from a dead branch.

{dkist_processing_trend-0.1.0rc4/dkist_processing_trend.egg-info → dkist_processing_trend-0.2.0}/PKG-INFO

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 Metadata-Version: 2.4
 Name: dkist-processing-trend
-Version: 0.1.0rc4
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 Summary: Pipelines for DKIST polarimetric trend analysis
 Author-email: NSO / AURA <dkistdc@nso.edu>
 License: BSD-3-Clause
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-Requires-Dist: opentelemetry-instrumentation-celery==0.65b0; extra == "frozen"
-Requires-Dist: opentelemetry-instrumentation-dbapi==0.65b0; extra == "frozen"
-Requires-Dist: opentelemetry-instrumentation-fastapi==0.65b0; extra == "frozen"
-Requires-Dist: opentelemetry-instrumentation-pika==0.65b0; extra == "frozen"
-Requires-Dist: opentelemetry-instrumentation-psycopg2==0.65b0; extra == "frozen"
-Requires-Dist: opentelemetry-instrumentation-pymongo==0.65b0; extra == "frozen"
-Requires-Dist: opentelemetry-instrumentation-redis==0.65b0; extra == "frozen"
-Requires-Dist: opentelemetry-instrumentation-requests==0.65b0; extra == "frozen"
-Requires-Dist: opentelemetry-instrumentation-sqlalchemy==0.65b0; extra == "frozen"
-Requires-Dist: opentelemetry-instrumentation-system-metrics==0.65b0; extra == "frozen"
+Requires-Dist: opentelemetry-api==1.45.0; extra == "frozen"
+Requires-Dist: opentelemetry-exporter-http-transport==0.66b0; extra == "frozen"
+Requires-Dist: opentelemetry-exporter-otlp==1.45.0; extra == "frozen"
+Requires-Dist: opentelemetry-exporter-otlp-common==0.66b0; extra == "frozen"
+Requires-Dist: opentelemetry-exporter-otlp-proto-common==1.45.0; extra == "frozen"
+Requires-Dist: opentelemetry-exporter-otlp-proto-grpc==1.45.0; extra == "frozen"
+Requires-Dist: opentelemetry-exporter-otlp-proto-http==1.45.0; extra == "frozen"
+Requires-Dist: opentelemetry-instrumentation==0.66b0; extra == "frozen"
+Requires-Dist: opentelemetry-instrumentation-aiohttp-client==0.66b0; extra == "frozen"
+Requires-Dist: opentelemetry-instrumentation-asgi==0.66b0; extra == "frozen"
+Requires-Dist: opentelemetry-instrumentation-botocore==0.66b0; extra == "frozen"
+Requires-Dist: opentelemetry-instrumentation-celery==0.66b0; extra == "frozen"
+Requires-Dist: opentelemetry-instrumentation-dbapi==0.66b0; extra == "frozen"
+Requires-Dist: opentelemetry-instrumentation-fastapi==0.66b0; extra == "frozen"
+Requires-Dist: opentelemetry-instrumentation-pika==0.66b0; extra == "frozen"
+Requires-Dist: opentelemetry-instrumentation-psycopg2==0.66b0; extra == "frozen"
+Requires-Dist: opentelemetry-instrumentation-pymongo==0.66b0; extra == "frozen"
+Requires-Dist: opentelemetry-instrumentation-redis==0.66b0; extra == "frozen"
+Requires-Dist: opentelemetry-instrumentation-requests==0.66b0; extra == "frozen"
+Requires-Dist: opentelemetry-instrumentation-sqlalchemy==0.66b0; extra == "frozen"
+Requires-Dist: opentelemetry-instrumentation-system-metrics==0.66b0; extra == "frozen"
 Requires-Dist: opentelemetry-propagator-aws-xray==1.0.2; extra == "frozen"
-Requires-Dist: opentelemetry-proto==1.44.0; extra == "frozen"
-Requires-Dist: opentelemetry-sdk==1.44.0; extra == "frozen"
-Requires-Dist: opentelemetry-semantic-conventions==0.65b0; extra == "frozen"
-Requires-Dist: opentelemetry-util-http==0.65b0; extra == "frozen"
+Requires-Dist: opentelemetry-proto==1.45.0; extra == "frozen"
+Requires-Dist: opentelemetry-sdk==1.45.0; extra == "frozen"
+Requires-Dist: opentelemetry-semantic-conventions==0.66b0; extra == "frozen"
+Requires-Dist: opentelemetry-util-http==0.66b0; extra == "frozen"
 Requires-Dist: outcome==1.3.0.post0; extra == "frozen"
 Requires-Dist: packaging==26.3; extra == "frozen"
-Requires-Dist: pandas==3.0.5; extra == "frozen"
+Requires-Dist: pandas==3.0.6; extra == "frozen"
 Requires-Dist: pandocfilters==1.5.1; extra == "frozen"
 Requires-Dist: parfive==2.3.1; extra == "frozen"
 Requires-Dist: parso==0.8.7; extra == "frozen"
@@ -235,35 +239,35 @@ Requires-Dist: pexpect==4.9.0; extra == "frozen"
 Requires-Dist: pika==1.4.4; extra == "frozen"
 Requires-Dist: pillow==11.3.0; extra == "frozen"
 Requires-Dist: pip==26.2.1; extra == "frozen"
-Requires-Dist: platformdirs==4.11.4; extra == "frozen"
+Requires-Dist: platformdirs==4.12.3; extra == "frozen"
 Requires-Dist: pluggy==1.6.0; extra == "frozen"
 Requires-Dist: pooch==1.9.0; extra == "frozen"
 Requires-Dist: proglog==0.1.12; extra == "frozen"
 Requires-Dist: prometheus_client==0.26.0; extra == "frozen"
 Requires-Dist: prompt_toolkit==3.0.53; extra == "frozen"
-Requires-Dist: propcache==0.5.2; extra == "frozen"
-Requires-Dist: protobuf==7.36.0; extra == "frozen"
+Requires-Dist: propcache==0.5.4; extra == "frozen"
+Requires-Dist: protobuf==7.36.2; extra == "frozen"
 Requires-Dist: psutil==7.2.2; extra == "frozen"
-Requires-Dist: psycopg==3.3.4; extra == "frozen"
-Requires-Dist: psycopg-binary==3.3.4; extra == "frozen"
-Requires-Dist: psycopg2-binary==2.9.12; extra == "frozen"
+Requires-Dist: psycopg==3.3.6; extra == "frozen"
+Requires-Dist: psycopg-binary==3.3.6; extra == "frozen"
+Requires-Dist: psycopg2-binary==2.9.13; extra == "frozen"
 Requires-Dist: ptyprocess==0.7.0; extra == "frozen"
-Requires-Dist: pure_eval==0.2.3; extra == "frozen"
+Requires-Dist: pure_eval==0.2.4; extra == "frozen"
 Requires-Dist: pycparser==3.0; extra == "frozen"
-Requires-Dist: pydantic==2.13.4; extra == "frozen"
+Requires-Dist: pydantic==2.13.5; extra == "frozen"
 Requires-Dist: pydantic-extra-types==2.11.1; extra == "frozen"
 Requires-Dist: pydantic-settings==2.15.0; extra == "frozen"
-Requires-Dist: pydantic_core==2.46.4; extra == "frozen"
+Requires-Dist: pydantic_core==2.46.5; extra == "frozen"
 Requires-Dist: pyerfa==2.0.1.5; extra == "frozen"
-Requires-Dist: pygtrie==2.5.0; extra == "frozen"
-Requires-Dist: pyparsing==3.3.2; extra == "frozen"
+Requires-Dist: pygtrie==2.6.2; extra == "frozen"
+Requires-Dist: pyparsing==3.3.3; extra == "frozen"
 Requires-Dist: python-daemon==3.1.2; extra == "frozen"
 Requires-Dist: python-dateutil==2.9.0.post0; extra == "frozen"
-Requires-Dist: python-dotenv==1.2.3; extra == "frozen"
+Requires-Dist: python-dotenv==1.2.4; extra == "frozen"
 Requires-Dist: python-json-logger==4.2.0; extra == "frozen"
 Requires-Dist: python-multipart==0.0.32; extra == "frozen"
-Requires-Dist: python-slugify==8.0.4; extra == "frozen"
-Requires-Dist: pytz==2026.3.post1; extra == "frozen"
+Requires-Dist: python-slugify==9.1.2; extra == "frozen"
+Requires-Dist: pytz==2026.5; extra == "frozen"
 Requires-Dist: pyzmq==27.2.0; extra == "frozen"
 Requires-Dist: redis==6.4.0; extra == "frozen"
 Requires-Dist: referencing==0.37.0; extra == "frozen"
@@ -273,23 +277,23 @@ Requires-Dist: rfc3986-validator==0.1.1; extra == "frozen"
 Requires-Dist: rfc3987-syntax==1.1.0; extra == "frozen"
 Requires-Dist: rich==15.0.0; extra == "frozen"
 Requires-Dist: rich-argparse==1.8.0; extra == "frozen"
-Requires-Dist: rich-toolkit==0.20.3; extra == "frozen"
-Requires-Dist: rpds-py==2026.6.3; extra == "frozen"
+Requires-Dist: rich-toolkit==0.20.5; extra == "frozen"
+Requires-Dist: rpds-py==2026.9.1; extra == "frozen"
 Requires-Dist: s3transfer==0.19.2; extra == "frozen"
 Requires-Dist: scikit-image==0.26.0; extra == "frozen"
 Requires-Dist: scikit-learn==1.9.0; extra == "frozen"
 Requires-Dist: scipy==1.18.1; extra == "frozen"
 Requires-Dist: semantic-version==2.10.0; extra == "frozen"
-Requires-Dist: setproctitle==1.3.7; extra == "frozen"
+Requires-Dist: setproctitle==1.3.8; extra == "frozen"
 Requires-Dist: shellingham==1.5.4; extra == "frozen"
 Requires-Dist: six==1.17.0; extra == "frozen"
 Requires-Dist: sniffio==1.3.1; extra == "frozen"
 Requires-Dist: solar-wavelength-calibration==2.0.3; extra == "frozen"
-Requires-Dist: soupsieve==2.9.2; extra == "frozen"
+Requires-Dist: soupsieve==2.10; extra == "frozen"
 Requires-Dist: sqids==0.5.1; extra == "frozen"
 Requires-Dist: sqlparse==0.6.0; extra == "frozen"
 Requires-Dist: stack-data==0.6.3; extra == "frozen"
-Requires-Dist: starlette==0.52.1; extra == "frozen"
+Requires-Dist: starlette==1.7.0; extra == "frozen"
 Requires-Dist: structlog==26.1.0; extra == "frozen"
 Requires-Dist: sunpy==8.0.0; extra == "frozen"
 Requires-Dist: svcs==26.2.0; extra == "frozen"
@@ -299,38 +303,37 @@ Requires-Dist: tenacity==8.5.0; extra == "frozen"
 Requires-Dist: termcolor==3.3.0; extra == "frozen"
 Requires-Dist: terminado==0.18.1; extra == "frozen"
 Requires-Dist: text-unidecode==1.3; extra == "frozen"
-Requires-Dist: threadpoolctl==3.6.0; extra == "frozen"
-Requires-Dist: tifffile==2026.8.23; extra == "frozen"
+Requires-Dist: threadpoolctl==3.7.0; extra == "frozen"
+Requires-Dist: tifffile==2026.9.20; extra == "frozen"
 Requires-Dist: tinycss2==1.5.1; extra == "frozen"
-Requires-Dist: tornado==6.5.8; extra == "frozen"
-Requires-Dist: tqdm==4.70.0; extra == "frozen"
+Requires-Dist: tornado==6.5.10; extra == "frozen"
+Requires-Dist: tqdm==4.70.1; extra == "frozen"
 Requires-Dist: traitlets==5.16.1; extra == "frozen"
-Requires-Dist: typer==0.27.1; extra == "frozen"
+Requires-Dist: typer==0.27.2; extra == "frozen"
 Requires-Dist: typing-inspection==0.4.4; extra == "frozen"
 Requires-Dist: typing_extensions==4.16.0; extra == "frozen"
-Requires-Dist: tzdata==2026.3; extra == "frozen"
+Requires-Dist: tzdata==2026.5; extra == "frozen"
 Requires-Dist: tzlocal==5.4.4; extra == "frozen"
-Requires-Dist: uc-micro-py==2.0.0; extra == "frozen"
 Requires-Dist: uncertainties==3.2.3; extra == "frozen"
 Requires-Dist: universal_pathlib==0.3.10; extra == "frozen"
 Requires-Dist: uri-template==1.3.0; extra == "frozen"
-Requires-Dist: urllib3==2.7.0; extra == "frozen"
+Requires-Dist: urllib3==2.8.0; extra == "frozen"
 Requires-Dist: uuid6==2025.0.1; extra == "frozen"
-Requires-Dist: uvicorn==0.52.4; extra == "frozen"
-Requires-Dist: uvloop==0.22.1; extra == "frozen"
+Requires-Dist: uvicorn==0.54.0; extra == "frozen"
+Requires-Dist: uvloop==0.23.0; extra == "frozen"
 Requires-Dist: vine==5.1.0; extra == "frozen"
 Requires-Dist: voluptuous==0.16.0; extra == "frozen"
-Requires-Dist: watchfiles==1.2.0; extra == "frozen"
-Requires-Dist: wcwidth==0.8.2; extra == "frozen"
+Requires-Dist: watchfiles==1.3.0; extra == "frozen"
+Requires-Dist: wcwidth==0.9.2; extra == "frozen"
 Requires-Dist: webcolors==25.10.0; extra == "frozen"
 Requires-Dist: webencodings==0.6.1; extra == "frozen"
-Requires-Dist: websocket-client==1.9.0; extra == "frozen"
-Requires-Dist: websockets==17.1; extra == "frozen"
+Requires-Dist: websocket-client==1.9.2; extra == "frozen"
+Requires-Dist: websockets==17.2; extra == "frozen"
 Requires-Dist: wirerope==1.0.0; extra == "frozen"
-Requires-Dist: wrapt==2.3.0; extra == "frozen"
+Requires-Dist: wrapt==2.5.0; extra == "frozen"
 Requires-Dist: yamale==6.1.0; extra == "frozen"
-Requires-Dist: yarl==1.24.5; extra == "frozen"
-Requires-Dist: zipp==4.1.0; extra == "frozen"
+Requires-Dist: yarl==1.25.1; extra == "frozen"
+Requires-Dist: zipp==4.1.1; extra == "frozen"
 
 dkist-processing-trend
 ========================

{dkist_processing_trend-0.1.0rc4 → dkist_processing_trend-0.2.0}/dkist_processing_trend/models/constants.py

@@ -84,12 +84,12 @@ class TrendConstants(ConstantsBase):
 
     @property
     def visp_arm_position_for_arm(self) -> dict[int, float]:
-        """Return the ViSP grating angle for all arms."""
+        """Return the ViSP arm position for all arms."""
         return _unjsonify_dict_keys(self._db_dict[TrendBudName.visp_arm_position_for_arm])
 
     @property
     def visp_grating_constant_for_arm(self) -> dict[int, float]:
-        """Return the ViSP grating angle for all arms."""
+        """Return the ViSP grating constant for all arms."""
         return _unjsonify_dict_keys(self._db_dict[TrendBudName.visp_grating_constant_for_arm])
 
     #################
@@ -134,10 +134,10 @@ class TrendConstants(ConstantsBase):
 
     @property
     def dlnirsp_arm_position_for_arm(self) -> dict[str, float]:
-        """Return the DLNIRSP grating angle for all arms."""
+        """Return the DLNIRSP arm position for all arms."""
         return _unjsonify_dict_keys(self._db_dict[TrendBudName.dlnirsp_arm_position_for_arm])
 
     @property
     def dlnirsp_grating_constant_for_arm(self) -> dict[str, float]:
-        """Return the DLNIRSP grating angle for all arms."""
+        """Return the DLNIRSP grating constant for all arms."""
         return _unjsonify_dict_keys(self._db_dict[TrendBudName.dlnirsp_grating_constant_for_arm])

{dkist_processing_trend-0.1.0rc4 → dkist_processing_trend-0.2.0}/dkist_processing_trend/models/parameters.py

@@ -59,7 +59,11 @@ class TrendParameters(ParameterBase, ParameterInstrumentMixin):
     @property
     def instrument_processing_options(
         self,
-    ) -> list[VispInstrumentOptions, CryonirspInstrumentOptions, DlnirspInstrumentOptions]:
+    ) -> (
+        list[VispInstrumentOptions]
+        | list[CryonirspInstrumentOptions]
+        | list[DlnirspInstrumentOptions]
+    ):
         """Return a list of dicts where each element represents a set of PAC input processing options."""
         raw_value: list[dict] = self._find_parameter_for_instrument(
             "trend_instrument_processing_options"

{dkist_processing_trend-0.1.0rc4 → dkist_processing_trend-0.2.0}/dkist_processing_trend/parsers/arm_id.py

@@ -43,7 +43,7 @@ class ArmIdLookupBud(SetStem):
     def __init__(self, constant_name: str, metadata_key: StrEnum):
         super().__init__(stem_name=constant_name)
         self.value_metadata_key = metadata_key.name
-        self.mapping: DefaultDict[float, set[float]] = defaultdict(set)
+        self.mapping: DefaultDict[int | str, set[int | float | str]] = defaultdict(set)
 
     def setter(self, fits_obj: TrendL0FitsAccess) -> None:
         """

{dkist_processing_trend-0.1.0rc4 → dkist_processing_trend-0.2.0}/dkist_processing_trend/tasks/__init__.py

@@ -7,21 +7,5 @@ from dkist_processing_trend.tasks.run_pac_fitter import *
 from dkist_processing_trend.tasks.trend_output_data import *
 from dkist_processing_trend.tasks.write_trend import *
 
-# These imports need to be after all the task imports to avoid circularity
-from dkist_processing_trend.tasks.initialize_arm_tasks import (  # isort: skip
-    initialize_cryonirsp_arm_tasks,
-)
-from dkist_processing_trend.tasks.initialize_arm_tasks import (  # isort: skip
-    initialize_dlnirsp_arm_tasks,
-)
-from dkist_processing_trend.tasks.initialize_arm_tasks import (  # isort: skip
-    initialize_visp_arm_tasks,
-)
-
 # Not used directly, but ensures that the common_configurations are logged early in a task run
 from dkist_processing_trend.config import dkist_processing_trend_configurations  # isort: skip
-
-# Initialize the arm task classes for each instrument
-initialize_visp_arm_tasks()
-initialize_cryonirsp_arm_tasks()
-initialize_dlnirsp_arm_tasks()

dkist_processing_trend-0.2.0/dkist_processing_trend/tasks/clean_array.py

@@ -0,0 +1,36 @@
+"""Function for cleaning non-finite values from an array."""
+
+import numpy as np
+
+
+def clean_non_finite_pixels(input_array: np.ndarray, copy: bool = False) -> np.ndarray:
+    """
+    Clean non-finite values from the input array.
+
+    +inf is replaced with the finite maximum, -inf is replaced with the finite minimum, and NaN is replaced with the
+    finite median.
+
+    If ``copy=False`` the array has its values replaced in-place and the same array is returned. Otherwise a copy is made
+    before cleaning.
+    """
+    if copy:
+        array = input_array.copy()
+    else:
+        array = input_array
+    finite_idx = np.isfinite(array)
+    if not finite_idx.all():
+        finite_values = array[finite_idx]
+
+        positive_infinity_mask = np.isposinf(array)
+        if positive_infinity_mask.any():
+            array[positive_infinity_mask] = finite_values.max()
+
+        negative_infinity_mask = np.isneginf(array)
+        if negative_infinity_mask.any():
+            array[negative_infinity_mask] = finite_values.min()
+
+        nan_pixel_mask = np.isnan(array)
+        if nan_pixel_mask.any():
+            array[nan_pixel_mask] = np.nanmedian(array)
+
+    return array